Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50696 * 120.00072 * 2 1 4 4 C 1.33122 * 119.99882 * 180.02562 * 2 1 3 5 5 F 1.35104 * 119.99590 * 180.02562 * 4 2 1 6 6 C 1.47294 * 120.00034 * 359.97438 * 4 2 1 7 7 O 1.21605 * 120.00072 * 8.43354 * 6 4 2 8 8 N 1.34779 * 119.99965 * 188.43209 * 6 4 2 9 9 C 1.47157 * 120.98624 * 359.54333 * 8 6 4 10 10 C 1.53294 * 108.37306 * 129.42960 * 9 8 6 11 11 H 1.08996 * 109.51287 * 292.36220 * 10 9 8 12 12 C 1.53000 * 109.50867 * 172.26532 * 10 9 8 13 13 O 1.42971 * 109.23560 * 52.33874 * 10 9 8 14 14 C 1.42895 * 114.20825 * 297.51622 * 13 10 9 15 15 C 1.52994 * 109.55059 * 182.22156 * 14 13 10 16 16 C 1.53185 * 109.34756 * 59.06084 * 15 14 13 17 17 N 1.46934 * 108.77264 * 54.58379 * 16 15 14 18 18 C 1.36934 * 120.63840 * 126.29013 * 17 16 15 19 19 H 1.08001 * 120.00119 * 215.69213 * 18 17 16 20 20 C 1.38811 * 120.00328 * 35.70977 * 18 17 16 21 21 N 1.31622 * 119.99746 * 356.57079 * 20 18 17 22 22 Si 1.86801 * 120.00284 * 176.58195 * 20 18 17 23 23 H 1.48500 * 109.46877 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47155 * 119.99195 * 22 20 18 25 25 H 1.48498 * 109.46944 * 239.99586 * 22 20 18 26 26 C 1.46919 * 118.71169 * 306.32022 * 17 16 15 27 27 C 1.52986 * 109.56873 * 302.53599 * 14 13 10 28 28 C 1.47148 * 120.99024 * 179.56904 * 8 6 4 29 29 H 1.08998 * 109.47295 * 239.99903 * 1 2 3 30 30 H 1.08994 * 109.47378 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.47585 * 119.99810 * 1 2 3 32 32 H 1.08993 * 109.47610 * 269.99943 * 3 2 1 33 33 H 1.09002 * 109.47278 * 30.00327 * 3 2 1 34 34 H 1.09009 * 109.47238 * 149.99652 * 3 2 1 35 35 H 1.08995 * 109.68811 * 9.70968 * 9 8 6 36 36 H 1.09005 * 109.68150 * 249.14574 * 9 8 6 37 37 H 1.08998 * 109.47317 * 60.00016 * 12 10 9 38 38 H 1.08997 * 109.47109 * 299.99642 * 12 10 9 39 39 H 1.08997 * 109.47068 * 179.97438 * 12 10 9 40 40 H 1.08998 * 109.49465 * 179.02308 * 15 14 13 41 41 H 1.09003 * 109.48792 * 299.09747 * 15 14 13 42 42 H 1.09004 * 109.58757 * 294.79624 * 16 15 14 43 43 H 1.09006 * 109.58596 * 174.37303 * 16 15 14 44 44 H 0.96998 * 119.99985 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58692 * 293.87250 * 26 17 16 46 46 H 1.09004 * 109.69649 * 173.52449 * 26 17 16 47 47 H 1.08991 * 109.49407 * 60.89432 * 27 14 13 48 48 H 1.08993 * 109.48900 * 180.94841 * 27 14 13 49 49 H 1.09010 * 109.67495 * 350.19019 * 28 8 6 50 50 H 1.08994 * 109.68041 * 110.73169 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1725 -1.1529 -0.0005 5 9 3.5235 -1.1528 0.0000 6 6 1.4360 -2.4285 -0.0005 7 8 0.2298 -2.4341 -0.1545 8 7 2.0990 -3.5894 0.1701 9 6 3.5597 -3.6086 0.3483 10 6 3.8841 -4.4494 1.5883 11 1 3.5240 -3.9368 2.4802 12 6 5.3978 -4.6479 1.6893 13 8 3.2421 -5.7219 1.4758 14 6 1.8155 -5.6564 1.4294 15 6 1.2397 -7.0724 1.3652 16 6 1.6947 -7.8616 2.5968 17 7 1.3206 -7.1116 3.8037 18 6 0.5861 -7.7058 4.7948 19 1 -0.1474 -7.1317 5.3415 20 6 0.7843 -9.0460 5.0973 21 7 1.6293 -9.7629 4.3871 22 14 -0.1485 -9.8322 6.5119 23 1 -1.0297 -8.8197 7.1471 24 1 -0.9739 -10.9544 5.9976 25 1 0.8169 -10.3472 7.5159 26 6 1.7495 -5.7117 3.9260 27 6 1.2943 -4.9456 2.6799 28 6 1.3840 -4.8754 0.1832 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 2.4421 1.6198 -1.0276 33 1 1.6714 2.0647 0.5139 34 1 3.2129 1.1747 0.5139 35 1 3.9259 -2.5916 0.4883 36 1 4.0308 -4.0516 -0.5292 37 1 5.8870 -3.6773 1.7707 38 1 5.7571 -5.1622 0.7979 39 1 5.6279 -5.2454 2.5714 40 1 0.1510 -7.0219 1.3474 41 1 1.5959 -7.5692 0.4628 42 1 2.7765 -7.9919 2.5681 43 1 1.2072 -8.8365 2.6066 44 1 1.7682 -10.6992 4.5986 45 1 2.8357 -5.6679 4.0054 46 1 1.3001 -5.2660 4.8134 47 1 1.6895 -3.9304 2.7126 48 1 0.2052 -4.9112 2.6513 49 1 0.3090 -4.6974 0.2156 50 1 1.6355 -5.4444 -0.7118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098583873.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -66.659996 kcal Electronic energy + Delta-G solvation = -32348.158801 eV Core-core repulsion = 28098.845643 eV Total energy + Delta-G solvation = -4249.313158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.60328 -40.62043 -39.05403 -36.43299 -35.60774 -34.42081 -33.47707 -31.56748 -30.12752 -29.73275 -28.62333 -27.88920 -27.08080 -25.88867 -24.18414 -22.61986 -21.77910 -21.46293 -20.07993 -19.20920 -18.94855 -17.56904 -16.94611 -16.85848 -16.40990 -15.74010 -15.58758 -15.10995 -15.03027 -14.63162 -14.46077 -14.17916 -14.01113 -13.64271 -13.43476 -13.31555 -13.21167 -13.02625 -12.95682 -12.63227 -12.58358 -12.53633 -12.13994 -12.03411 -11.80592 -11.57378 -11.40789 -11.26104 -11.23542 -10.88487 -10.84375 -10.53184 -10.27700 -10.17434 -10.00784 -9.90960 -9.67620 -9.53114 -9.23950 -9.17012 -8.39577 -8.32904 -6.46725 -5.73309 -3.26177 0.86373 2.71416 2.87058 3.38994 3.46467 3.48424 3.82174 3.97755 4.22339 4.50457 4.51784 4.78664 4.85719 5.01319 5.10513 5.14189 5.19514 5.30785 5.35426 5.40663 5.46661 5.49462 5.51921 5.57343 5.60669 5.66067 5.69362 5.74976 5.82678 5.88323 5.91445 6.07007 6.10617 6.16927 6.24244 6.36147 6.36838 6.40255 6.60903 6.63634 6.76018 6.82333 7.06914 7.24608 7.54860 7.69498 7.83449 7.89147 7.91841 8.58507 9.30847 9.89790 10.51210 11.32766 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.003171 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.934400 B = 8826.672995 C = 9423.597890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.067 4.067 3 C -0.126 4.126 4 C -0.028 4.028 5 F -0.124 7.124 6 C 0.548 3.452 7 O -0.523 6.523 8 N -0.596 5.596 9 C 0.023 3.977 10 C 0.071 3.929 11 H 0.064 0.936 12 C -0.140 4.140 13 O -0.354 6.354 14 C 0.121 3.879 15 C -0.128 4.128 16 C 0.176 3.824 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.062 0.938 20 C 0.009 3.991 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.154 3.846 27 C -0.152 4.152 28 C 0.087 3.913 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.097 0.903 44 H 0.253 0.747 45 H 0.020 0.980 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.369 19.611 -11.166 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.070 4.070 3 C -0.183 4.183 4 C -0.050 4.050 5 F -0.103 7.103 6 C 0.336 3.664 7 O -0.402 6.402 8 N -0.328 5.328 9 C -0.099 4.099 10 C 0.013 3.987 11 H 0.082 0.918 12 C -0.198 4.198 13 O -0.273 6.273 14 C 0.081 3.919 15 C -0.167 4.167 16 C 0.050 3.950 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.027 3.973 27 C -0.192 4.192 28 C -0.035 4.035 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.115 0.885 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.117 0.883 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.920 19.214 -11.219 22.592 hybrid contribution -0.132 -0.296 0.648 0.725 sum 3.788 18.918 -10.571 22.000 Atomic orbital electron populations 1.20950 0.88649 1.01980 1.04895 1.22762 0.98192 0.93523 0.92517 1.20957 1.00347 0.93633 1.03337 1.19425 0.76499 0.94684 1.14392 1.91009 1.29292 1.95457 1.94504 1.18120 0.87089 0.83167 0.78017 1.90816 1.12898 1.86071 1.50443 1.48065 1.08389 1.06155 1.70155 1.23816 0.79750 1.06626 0.99702 1.22374 0.94176 0.86081 0.96104 0.91832 1.21679 0.92582 1.02079 1.03455 1.88061 1.18340 1.26938 1.93997 1.21733 0.80888 0.97031 0.92283 1.22248 0.99727 0.92731 1.02016 1.20849 0.97602 0.95206 0.81338 1.43968 1.61899 1.07433 1.18197 1.19188 1.13668 0.94006 1.11409 0.92009 1.25329 0.97582 0.98001 0.98064 1.69917 1.37612 1.07489 1.39623 0.86233 0.78923 0.79088 0.82650 1.20285 1.21680 1.21555 1.20770 0.96368 0.86595 0.93578 1.22523 1.01211 0.98005 0.97447 1.22570 0.98692 0.82802 0.99468 0.89719 0.91993 0.89108 0.89875 0.90272 0.90723 0.84385 0.90920 0.91393 0.91869 0.91162 0.91318 0.92509 0.95713 0.88456 0.93621 0.96173 0.93219 0.93327 0.91518 0.88313 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 8.34 36.00 0.30 -0.72 16 2 C -0.07 -0.63 6.12 -101.14 -0.62 -1.25 16 3 C -0.13 -0.81 9.78 36.00 0.35 -0.46 16 4 C -0.03 -0.32 7.16 -37.68 -0.27 -0.59 16 5 F -0.12 -1.31 12.43 2.25 0.03 -1.28 16 6 C 0.55 7.77 7.61 -12.58 -0.10 7.67 16 7 O -0.52 -8.35 12.64 5.27 0.07 -8.29 16 8 N -0.60 -8.56 2.52 -173.61 -0.44 -9.00 16 9 C 0.02 0.29 5.65 -3.53 -0.02 0.27 16 10 C 0.07 1.03 3.01 -26.58 -0.08 0.95 16 11 H 0.06 0.97 6.29 -51.93 -0.33 0.64 16 12 C -0.14 -1.67 9.57 37.16 0.36 -1.32 16 13 O -0.35 -6.40 8.64 -35.23 -0.30 -6.70 16 14 C 0.12 2.16 0.68 -90.49 -0.06 2.10 16 15 C -0.13 -2.53 5.10 -26.64 -0.14 -2.66 16 16 C 0.18 4.32 5.02 -3.71 -0.02 4.30 16 17 N -0.59 -15.23 3.00 -172.32 -0.52 -15.74 16 18 C -0.25 -7.05 9.55 -15.06 -0.14 -7.20 16 19 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16 20 C 0.01 0.25 5.31 -17.43 -0.09 0.16 16 21 N -0.90 -26.28 10.67 55.49 0.59 -25.68 16 22 Si 0.90 21.85 29.56 -169.99 -5.02 16.83 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.15 3.39 6.28 -3.71 -0.02 3.36 16 27 C -0.15 -2.86 4.33 -26.64 -0.12 -2.98 16 28 C 0.09 1.36 5.29 -3.55 -0.02 1.34 16 29 H 0.08 0.93 7.47 -51.93 -0.39 0.54 16 30 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 31 H 0.09 0.97 7.01 -51.93 -0.36 0.60 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.07 0.48 7.55 -51.92 -0.39 0.09 16 35 H 0.14 1.54 3.95 -51.93 -0.21 1.34 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.66 7.83 -51.93 -0.41 0.25 16 43 H 0.10 2.67 5.96 -51.93 -0.31 2.36 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 46 H 0.05 1.08 7.94 -51.93 -0.41 0.67 16 47 H 0.05 0.85 6.15 -51.93 -0.32 0.53 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.10 1.62 7.08 -51.92 -0.37 1.25 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -31.06 380.02 -8.63 -39.69 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.08 Total: 1.48 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.69 Total: 2.97 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.36 Total: -50.43 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.24 Total: -14.99 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.03 Total: -1.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.06 -8.63 -39.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098583873.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.970 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds