Wall clock time and date at job start Sat Apr 11 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.54887 * 2 1 4 4 C 1.53303 * 109.51545 * 239.88449 * 2 1 3 5 5 N 1.47153 * 108.39731 * 187.73355 * 4 2 1 6 6 C 1.34774 * 120.98753 * 230.59968 * 5 4 2 7 7 O 1.21288 * 120.00185 * 353.75288 * 6 5 4 8 8 C 1.50702 * 120.00372 * 173.74973 * 6 5 4 9 9 C 1.52996 * 115.54790 * 77.98151 * 8 6 5 10 10 F 1.39898 * 109.47810 * 303.50072 * 9 8 6 11 11 C 1.53001 * 117.49861 * 292.27954 * 8 6 5 12 12 C 1.52995 * 60.00168 * 252.51024 * 11 8 6 13 13 C 1.47153 * 118.02697 * 50.58472 * 5 4 2 14 14 C 1.53259 * 108.40817 * 309.51434 * 13 5 4 15 15 C 1.52977 * 109.39728 * 292.16102 * 14 13 5 16 16 C 1.53188 * 109.35318 * 178.89440 * 15 14 13 17 17 N 1.46935 * 108.77968 * 54.56410 * 16 15 14 18 18 C 1.36933 * 120.63940 * 126.35340 * 17 16 15 19 19 H 1.08010 * 119.99859 * 210.79385 * 18 17 16 20 20 C 1.38808 * 120.00518 * 30.79869 * 18 17 16 21 21 N 1.31620 * 119.99933 * 12.48758 * 20 18 17 22 22 Si 1.86804 * 120.00419 * 192.48836 * 20 18 17 23 23 H 1.48501 * 109.46856 * 59.99701 * 22 20 18 24 24 H 1.48498 * 109.47195 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46754 * 300.00040 * 22 20 18 26 26 C 1.46927 * 118.71516 * 306.32854 * 17 16 15 27 27 C 1.53002 * 109.35350 * 172.07554 * 14 13 5 28 28 O 1.42899 * 109.32647 * 52.14393 * 14 13 5 29 29 H 1.09006 * 109.46816 * 180.11713 * 1 2 3 30 30 H 1.09000 * 109.47550 * 300.11940 * 1 2 3 31 31 H 1.09005 * 109.47083 * 60.12179 * 1 2 3 32 32 H 1.08996 * 109.68494 * 67.99067 * 4 2 1 33 33 H 1.09004 * 109.67924 * 307.47076 * 4 2 1 34 34 H 1.09002 * 109.46991 * 63.50304 * 9 8 6 35 35 H 1.09000 * 109.47036 * 183.49582 * 9 8 6 36 36 H 1.09005 * 117.49612 * 359.97438 * 11 8 6 37 37 H 1.08999 * 117.49915 * 145.01506 * 11 8 6 38 38 H 1.09001 * 117.49594 * 252.51422 * 12 11 8 39 39 H 1.09001 * 117.52450 * 107.47981 * 12 11 8 40 40 H 1.09002 * 109.67675 * 69.24412 * 13 5 4 41 41 H 1.08999 * 109.67609 * 189.78400 * 13 5 4 42 42 H 1.09011 * 109.48844 * 298.85078 * 15 14 13 43 43 H 1.08998 * 109.49447 * 58.92063 * 15 14 13 44 44 H 1.09013 * 109.58156 * 294.77707 * 16 15 14 45 45 H 1.09000 * 109.59448 * 174.35909 * 16 15 14 46 46 H 0.96998 * 119.99846 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.58748 * 293.89497 * 26 17 16 48 48 H 1.08996 * 109.58931 * 173.46182 * 26 17 16 49 49 H 1.09001 * 109.48912 * 301.10828 * 27 14 13 50 50 H 1.08996 * 109.48798 * 61.15019 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0421 -0.7250 -1.2499 5 7 3.5014 -0.8753 -1.1345 6 6 4.3190 -0.5013 -2.1385 7 8 3.8523 -0.1395 -3.1979 8 6 5.8132 -0.5326 -1.9449 9 6 6.4621 -1.9148 -2.0400 10 9 5.8645 -2.7755 -1.1131 11 6 6.4185 0.4659 -0.9561 12 6 6.6176 0.6626 -2.4603 13 6 4.0415 -1.4456 0.1099 14 6 3.4315 -0.6880 1.2942 15 6 3.9573 0.7486 1.3035 16 6 3.3258 1.5128 2.4713 17 7 3.5766 0.7696 3.7138 18 6 4.1603 1.3844 4.7891 19 1 4.7795 0.8148 5.4664 20 6 3.9564 2.7398 5.0087 21 7 3.0194 3.3807 4.3427 22 14 5.0117 3.6541 6.2497 23 1 6.4381 3.5667 5.8461 24 1 4.5975 5.0794 6.2968 25 1 4.8387 3.0431 7.5920 26 6 3.1884 -0.6459 3.7802 27 6 3.8216 -1.3867 2.5983 28 8 2.0084 -0.6759 1.1655 29 1 -0.3633 -1.0277 0.0021 30 1 -0.3634 0.5157 0.8889 31 1 -0.3633 0.5120 -0.8911 32 1 1.8022 -0.1401 -2.1378 33 1 1.5762 -1.7079 -1.3209 34 1 6.3249 -2.3121 -3.0458 35 1 7.5273 -1.8318 -1.8245 36 1 5.7360 1.1457 -0.4460 37 1 7.2792 0.1380 -0.3731 38 1 7.6092 0.4641 -2.8669 39 1 6.0660 1.4712 -2.9399 40 1 3.7778 -2.5013 0.1745 41 1 5.1259 -1.3362 0.1234 42 1 5.0412 0.7384 1.4193 43 1 3.6961 1.2376 0.3650 44 1 2.2515 1.6035 2.3103 45 1 3.7716 2.5049 2.5427 46 1 2.8772 4.3279 4.4959 47 1 2.1031 -0.7302 3.7251 48 1 3.5436 -1.0788 4.7154 49 1 3.4639 -2.4162 2.5804 50 1 4.9065 -1.3805 2.7037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098638916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:29 Heat of formation + Delta-G solvation = -71.253768 kcal Electronic energy + Delta-G solvation = -33264.551820 eV Core-core repulsion = 29015.039461 eV Total energy + Delta-G solvation = -4249.512359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -47.95214 -40.80212 -39.12483 -36.97092 -36.14831 -34.58238 -33.47584 -31.49077 -30.16826 -29.67173 -28.18319 -27.20632 -26.52677 -24.15150 -23.03856 -22.88121 -22.33204 -21.62030 -20.43794 -18.93925 -18.55922 -17.54270 -16.93491 -16.59392 -16.22486 -15.87424 -15.57924 -15.38689 -15.13855 -14.71092 -14.64014 -14.23394 -14.20929 -13.81932 -13.43896 -13.32364 -13.15370 -12.94366 -12.54967 -12.21696 -12.11723 -11.90089 -11.81448 -11.73708 -11.63406 -11.47450 -11.40071 -11.33581 -11.00095 -10.79606 -10.74075 -10.49089 -10.47417 -10.35333 -10.24058 -10.05019 -9.85626 -9.69814 -9.48724 -9.27106 -8.45511 -8.29537 -6.57610 -5.75999 -3.22096 2.46140 2.80246 3.36103 3.38087 3.43825 3.44343 3.96063 4.04163 4.23863 4.44802 4.49989 4.50651 4.72355 4.82037 4.99262 5.06537 5.17204 5.20394 5.28618 5.34451 5.41221 5.41940 5.46265 5.50246 5.56839 5.61463 5.64340 5.70257 5.75596 5.83741 5.88385 5.93013 6.05945 6.13240 6.24517 6.32178 6.38678 6.44774 6.48200 6.54148 6.69222 6.85059 7.10149 7.34021 7.40161 7.64282 7.72979 7.80548 8.08353 8.49790 9.25273 9.87712 10.47145 11.32166 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.004318 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.881334 B = 6482.939924 C = 7283.061408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 H 0.068 0.932 4 C 0.084 3.916 5 N -0.598 5.598 6 C 0.556 3.444 7 O -0.543 6.543 8 C -0.203 4.203 9 C 0.107 3.893 10 F -0.206 7.206 11 C -0.156 4.156 12 C -0.132 4.132 13 C 0.086 3.914 14 C 0.115 3.885 15 C -0.162 4.162 16 C 0.181 3.819 17 N -0.590 5.590 18 C -0.252 4.252 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.151 3.849 27 C -0.116 4.116 28 O -0.357 6.357 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.021 0.979 45 H 0.084 0.916 46 H 0.253 0.747 47 H 0.027 0.973 48 H 0.052 0.948 49 H 0.059 0.941 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -9.624 -13.359 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.038 4.038 5 N -0.329 5.329 6 C 0.344 3.656 7 O -0.421 6.421 8 C -0.207 4.207 9 C 0.052 3.948 10 F -0.187 7.187 11 C -0.193 4.193 12 C -0.169 4.169 13 C -0.037 4.037 14 C 0.075 3.925 15 C -0.202 4.202 16 C 0.055 3.945 17 N -0.313 5.313 18 C -0.381 4.381 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.024 3.976 27 C -0.156 4.156 28 O -0.276 6.276 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.045 0.955 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.112 -9.362 -13.733 17.122 hybrid contribution 0.631 0.536 0.450 0.942 sum 4.743 -8.826 -13.284 16.639 Atomic orbital electron populations 1.21680 0.92594 1.02700 1.02790 1.22381 0.95220 0.96224 0.84777 0.91423 1.22407 0.79558 1.01762 1.00086 1.48008 1.06613 1.61717 1.16606 1.19284 0.86641 0.76569 0.83137 1.90671 1.76968 1.48443 1.25979 1.22002 0.93119 0.94242 1.11289 1.21382 0.96456 0.84874 0.92061 1.92790 1.85888 1.71567 1.68443 1.23411 1.03029 1.00072 0.92753 1.22983 1.00236 0.96682 0.97014 1.22843 1.00477 0.97496 0.82897 1.21775 0.80886 0.95827 0.93984 1.22811 1.01156 0.95504 1.00699 1.20632 0.96681 0.95067 0.82080 1.43972 1.70578 1.05770 1.10936 1.19132 1.22360 0.92435 1.04211 0.91896 1.25125 0.97279 0.98381 0.98672 1.69985 1.31545 1.09257 1.44067 0.86383 0.80134 0.78867 0.81419 1.21085 1.21684 1.20879 1.20803 0.96518 0.86015 0.94248 1.21979 1.00906 0.98294 0.94433 1.88000 1.20787 1.76437 1.42350 0.91980 0.91007 0.91348 0.88746 0.90967 0.89915 0.89442 0.86945 0.87216 0.87496 0.87516 0.90937 0.88059 0.91682 0.93397 0.96054 0.89798 0.93652 0.95505 0.92943 0.92270 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.57 37.16 0.36 -1.44 16 2 C 0.07 1.11 3.02 -26.58 -0.08 1.03 16 3 H 0.07 1.15 6.29 -51.93 -0.33 0.82 16 4 C 0.08 1.19 5.90 -3.53 -0.02 1.17 16 5 N -0.60 -8.72 2.52 -172.29 -0.43 -9.16 16 6 C 0.56 8.24 6.79 -10.99 -0.07 8.17 16 7 O -0.54 -9.51 16.48 5.55 0.09 -9.42 16 8 C -0.20 -2.31 1.31 -155.66 -0.20 -2.51 16 9 C 0.11 0.99 7.37 37.16 0.27 1.27 16 10 F -0.21 -2.39 13.80 2.25 0.03 -2.36 16 11 C -0.16 -1.67 8.57 -26.73 -0.23 -1.90 16 12 C -0.13 -1.27 9.85 -26.73 -0.26 -1.54 16 13 C 0.09 1.23 3.51 -3.55 -0.01 1.21 16 14 C 0.12 1.92 0.68 -90.50 -0.06 1.86 16 15 C -0.16 -2.99 3.36 -26.65 -0.09 -3.08 16 16 C 0.18 4.26 5.03 -3.71 -0.02 4.24 16 17 N -0.59 -14.51 2.98 -172.31 -0.51 -15.03 16 18 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 19 H 0.06 1.66 7.86 -52.48 -0.41 1.25 16 20 C 0.00 0.11 5.01 -17.43 -0.09 0.02 16 21 N -0.90 -26.04 11.12 55.49 0.62 -25.43 16 22 Si 0.90 21.44 29.57 -169.99 -5.03 16.41 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.15 3.16 6.28 -3.71 -0.02 3.14 16 27 C -0.12 -1.99 5.10 -26.63 -0.14 -2.12 16 28 O -0.36 -6.27 8.64 -35.23 -0.30 -6.57 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.34 7.13 -51.93 -0.37 0.97 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.11 1.45 5.77 -51.93 -0.30 1.15 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.03 7.98 -51.93 -0.41 0.62 16 41 H 0.10 1.37 4.20 -51.93 -0.22 1.15 16 42 H 0.06 1.18 7.11 -51.92 -0.37 0.81 16 43 H 0.05 0.86 5.81 -51.93 -0.30 0.56 16 44 H 0.02 0.55 7.83 -51.92 -0.41 0.14 16 45 H 0.08 2.22 6.12 -51.93 -0.32 1.90 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 48 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -31.67 377.06 -8.71 -40.38 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.04 Total: 2.90 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.81 Total: 2.59 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.33 Total: -49.61 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.21 Total: -15.99 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.03 Total: -2.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.67 -8.71 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098638916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.870 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds