Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51077 * 2 1 4 4 C 1.53288 * 109.51294 * 120.10124 * 2 1 3 5 5 N 1.47170 * 108.37307 * 172.21459 * 4 2 1 6 6 C 1.34775 * 120.95356 * 129.47011 * 5 4 2 7 7 O 1.21279 * 120.00022 * 174.31131 * 6 5 4 8 8 C 1.50701 * 119.99771 * 354.31309 * 6 5 4 9 9 C 1.52998 * 115.55163 * 65.82685 * 8 6 5 10 10 F 1.39899 * 109.47208 * 174.02558 * 9 8 6 11 11 C 1.53000 * 117.49669 * 280.11363 * 8 6 5 12 12 C 1.52997 * 60.00184 * 252.51031 * 11 8 6 13 13 C 1.47162 * 118.06000 * 309.49081 * 5 4 2 14 14 C 1.53262 * 108.39886 * 50.45427 * 13 5 4 15 15 C 1.52984 * 109.39097 * 67.79446 * 14 13 5 16 16 C 1.53192 * 109.35435 * 181.10906 * 15 14 13 17 17 N 1.46933 * 108.77152 * 305.42498 * 16 15 14 18 18 C 1.36938 * 120.64588 * 233.65117 * 17 16 15 19 19 H 1.08001 * 119.99339 * 30.76469 * 18 17 16 20 20 C 1.38807 * 120.00684 * 210.75802 * 18 17 16 21 21 N 1.31619 * 119.99446 * 12.96579 * 20 18 17 22 22 Si 1.86792 * 120.00467 * 192.96759 * 20 18 17 23 23 H 1.48504 * 109.46987 * 59.99916 * 22 20 18 24 24 H 1.48498 * 109.47753 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47433 * 300.00309 * 22 20 18 26 26 C 1.46925 * 118.71344 * 53.68365 * 17 16 15 27 27 C 1.52990 * 109.35741 * 187.88023 * 14 13 5 28 28 O 1.42900 * 109.32240 * 307.82798 * 14 13 5 29 29 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47713 * 59.99191 * 1 2 3 31 31 H 1.09002 * 109.46808 * 299.99448 * 1 2 3 32 32 H 1.08995 * 109.68432 * 291.98554 * 4 2 1 33 33 H 1.09000 * 109.68189 * 52.54153 * 4 2 1 34 34 H 1.09007 * 109.46904 * 294.02479 * 9 8 6 35 35 H 1.08998 * 109.47418 * 54.02033 * 9 8 6 36 36 H 1.09000 * 117.50087 * 0.02562 * 11 8 6 37 37 H 1.09003 * 117.49356 * 145.02096 * 11 8 6 38 38 H 1.08996 * 117.50477 * 252.51075 * 12 11 8 39 39 H 1.09005 * 117.51450 * 107.47609 * 12 11 8 40 40 H 1.08995 * 109.67827 * 290.72875 * 13 5 4 41 41 H 1.09000 * 109.67704 * 170.17891 * 13 5 4 42 42 H 1.09002 * 109.49410 * 301.07521 * 15 14 13 43 43 H 1.09006 * 109.48965 * 61.14719 * 15 14 13 44 44 H 1.08999 * 109.58874 * 185.63892 * 16 15 14 45 45 H 1.08998 * 109.58388 * 65.20848 * 16 15 14 46 46 H 0.97006 * 119.99884 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.58692 * 186.53672 * 26 17 16 48 48 H 1.08996 * 109.70773 * 66.17260 * 26 17 16 49 49 H 1.08999 * 109.49513 * 298.83812 * 27 14 13 50 50 H 1.08999 * 109.49497 * 58.88821 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 1.2500 5 7 3.5013 -0.8758 1.1335 6 6 4.3192 -0.5029 2.1377 7 8 5.5086 -0.7292 2.0669 8 6 3.7558 0.1954 3.3485 9 6 2.8123 -0.6424 4.2139 10 9 2.4747 0.0761 5.3658 11 6 3.4628 1.6922 3.2282 12 6 4.6529 1.2101 4.0601 13 6 4.0410 -1.4455 -0.1114 14 6 3.4305 -0.6870 -1.2950 15 6 3.9556 0.7499 -1.3027 16 6 3.3236 1.5151 -2.4697 17 7 3.5750 0.7734 -3.7129 18 6 4.1585 1.3898 -4.7875 19 1 4.8637 2.1928 -4.6320 20 6 3.8439 0.9823 -6.0766 21 7 2.8112 0.1930 -6.2836 22 14 4.8859 1.5542 -7.5175 23 1 6.2860 1.0965 -7.3283 24 1 4.3451 0.9833 -8.7772 25 1 4.8559 3.0370 -7.5926 26 6 3.1876 -0.6422 -3.7810 27 6 3.8210 -1.3840 -2.5997 28 8 2.0074 -0.6756 -1.1660 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8025 -0.1393 2.1377 33 1 1.5763 -1.7076 1.3211 34 1 1.9079 -0.8702 3.6496 35 1 3.3074 -1.5712 4.4971 36 1 3.6772 2.1719 2.2732 37 1 2.5975 2.0804 3.7656 38 1 4.5708 1.2811 5.1446 39 1 5.6508 1.3723 3.6526 40 1 3.7773 -2.5010 -0.1766 41 1 5.1254 -1.3359 -0.1253 42 1 3.6940 1.2378 -0.3637 43 1 5.0394 0.7405 -1.4185 44 1 3.7689 2.5075 -2.5398 45 1 2.2493 1.6049 -2.3086 46 1 2.5910 -0.0915 -7.1845 47 1 3.5432 -1.0738 -4.7166 48 1 2.1024 -0.7292 -3.7275 49 1 4.9058 -1.3770 -2.7054 50 1 3.4639 -2.4138 -2.5830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098638917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -70.960536 kcal Electronic energy + Delta-G solvation = -32507.527018 eV Core-core repulsion = 28258.027374 eV Total energy + Delta-G solvation = -4249.499643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.11897 -40.96560 -39.26464 -36.70867 -36.43660 -34.68592 -33.55218 -31.62769 -30.18357 -29.79056 -28.75379 -27.16628 -26.49797 -24.43414 -22.86171 -22.75570 -22.48397 -21.71260 -20.41697 -19.05145 -19.02255 -17.63822 -16.98013 -16.73427 -16.38289 -15.96000 -15.80609 -15.51382 -15.20987 -14.82683 -14.73879 -14.35770 -14.17623 -13.64558 -13.48124 -13.38601 -13.31752 -13.03676 -12.69930 -12.50501 -12.37579 -12.21117 -11.86951 -11.83114 -11.70234 -11.61418 -11.44972 -11.33261 -10.99201 -10.85571 -10.82024 -10.66933 -10.52578 -10.35304 -10.25234 -10.10923 -9.88767 -9.83404 -9.55336 -9.34251 -8.46520 -8.44437 -6.58717 -5.75892 -3.22217 2.29475 2.63963 3.24068 3.39246 3.44710 3.45931 3.83180 4.01524 4.05891 4.31950 4.38471 4.47450 4.50820 4.62145 4.75533 4.87960 5.00796 5.04046 5.18923 5.22965 5.30704 5.34729 5.36363 5.40661 5.44520 5.46777 5.56161 5.59651 5.60447 5.74379 5.80606 5.82046 5.94595 6.01104 6.13785 6.25320 6.27850 6.31564 6.52295 6.54687 6.66945 6.74660 7.00164 7.18123 7.42000 7.57909 7.76133 7.81315 7.94721 8.49766 9.25245 9.87151 10.46290 11.32171 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.003158 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.422884 B = 8865.341461 C = 9253.929135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.072 3.928 5 N -0.603 5.603 6 C 0.556 3.444 7 O -0.530 6.530 8 C -0.204 4.204 9 C 0.102 3.898 10 F -0.207 7.207 11 C -0.150 4.150 12 C -0.133 4.133 13 C 0.088 3.912 14 C 0.120 3.880 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.062 0.938 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.180 3.820 27 C -0.127 4.127 28 O -0.352 6.352 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.021 0.979 46 H 0.254 0.746 47 H 0.086 0.914 48 H 0.028 0.972 49 H 0.070 0.930 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -2.138 20.661 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.051 4.051 5 N -0.336 5.336 6 C 0.343 3.657 7 O -0.406 6.406 8 C -0.208 4.208 9 C 0.047 3.953 10 F -0.188 7.188 11 C -0.187 4.187 12 C -0.170 4.170 13 C -0.034 4.034 14 C 0.080 3.920 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.312 5.312 18 C -0.384 4.384 19 H 0.080 0.920 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.054 3.946 27 C -0.167 4.167 28 O -0.271 6.271 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.104 0.896 48 H 0.046 0.954 49 H 0.088 0.912 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.324 -2.399 20.325 20.734 hybrid contribution 0.593 0.326 -0.499 0.840 sum -2.732 -2.073 19.826 20.121 Atomic orbital electron populations 1.21709 0.92524 1.02992 1.02794 1.22373 0.95294 0.96131 0.85067 0.91515 1.22738 0.80057 1.01982 1.00286 1.48082 1.06830 1.62375 1.16326 1.19182 0.85919 0.78132 0.82469 1.90711 1.15487 1.54963 1.79441 1.22059 1.05982 0.93484 0.99266 1.21478 0.98252 0.93191 0.82417 1.92771 1.93680 1.80540 1.51856 1.23133 1.01021 0.91614 1.02914 1.23029 0.96268 0.98078 0.99661 1.22553 1.00782 0.97529 0.82500 1.21746 0.80501 0.95401 0.94317 1.22533 1.01391 0.95783 0.99493 1.20763 0.96416 0.93860 0.86298 1.43979 1.71013 1.06013 1.10231 1.19120 1.17750 1.17073 0.84491 0.92013 1.25120 0.96534 1.00081 0.97623 1.69994 1.26014 1.38142 1.20477 0.86371 0.80007 0.78397 0.81951 1.21015 1.21618 1.20922 1.20661 0.96229 0.83192 0.94495 1.22219 1.01109 0.98678 0.94649 1.88084 1.20898 1.76299 1.41787 0.91769 0.90954 0.91352 0.88887 0.90443 0.89419 0.89808 0.87800 0.87217 0.87284 0.87418 0.90878 0.88387 0.93266 0.91484 0.93178 0.96136 0.93589 0.89620 0.95393 0.91180 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 37.16 0.36 -1.09 16 2 C 0.07 0.87 3.01 -26.58 -0.08 0.79 16 3 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 4 C 0.07 0.73 5.03 -3.53 -0.02 0.71 16 5 N -0.60 -7.59 2.52 -172.28 -0.43 -8.03 16 6 C 0.56 7.34 6.99 -10.99 -0.08 7.27 16 7 O -0.53 -8.95 16.21 5.56 0.09 -8.86 16 8 C -0.20 -2.03 1.40 -155.66 -0.22 -2.25 16 9 C 0.10 0.81 7.21 37.16 0.27 1.08 16 10 F -0.21 -1.88 15.95 2.25 0.04 -1.84 16 11 C -0.15 -1.31 9.38 -26.73 -0.25 -1.56 16 12 C -0.13 -1.27 9.47 -26.73 -0.25 -1.52 16 13 C 0.09 1.29 5.27 -3.55 -0.02 1.27 16 14 C 0.12 2.00 0.68 -90.50 -0.06 1.94 16 15 C -0.15 -2.69 4.33 -26.64 -0.12 -2.81 16 16 C 0.15 3.24 6.28 -3.71 -0.02 3.22 16 17 N -0.59 -14.75 2.98 -172.32 -0.51 -15.26 16 18 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 19 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 20 C 0.01 0.15 5.00 -17.43 -0.09 0.06 16 21 N -0.90 -26.08 11.14 55.49 0.62 -25.47 16 22 Si 0.90 21.69 29.57 -169.99 -5.03 16.66 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.18 4.28 5.03 -3.71 -0.02 4.26 16 27 C -0.13 -2.39 5.10 -26.64 -0.14 -2.53 16 28 O -0.35 -5.79 8.65 -35.23 -0.30 -6.09 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.73 4.47 -51.93 -0.23 0.50 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.55 5.69 -51.92 -0.30 0.25 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.11 0.80 7.96 -51.93 -0.41 0.39 16 38 H 0.11 0.91 7.61 -51.93 -0.40 0.51 16 39 H 0.11 1.14 8.00 -51.93 -0.42 0.73 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.55 7.12 -51.93 -0.37 1.18 16 42 H 0.05 0.78 6.15 -51.93 -0.32 0.46 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 45 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.09 2.28 6.13 -51.93 -0.32 1.96 16 48 H 0.03 0.72 7.83 -51.93 -0.41 0.31 16 49 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -31.77 382.25 -8.74 -40.51 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.09 Total: 0.93 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.88 Total: 1.69 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.33 Total: -48.76 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.21 Total: -14.96 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.77 -8.74 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098638917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.453 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds