Wall clock time and date at job start Sat Apr 11 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50688 * 120.00659 * 2 1 4 4 C 1.52998 * 109.47495 * 125.00239 * 3 2 1 5 5 C 1.53000 * 109.47351 * 185.18728 * 4 3 2 6 6 H 1.08995 * 109.47321 * 54.33255 * 5 4 3 7 7 C 1.53002 * 109.46954 * 294.33315 * 5 4 3 8 8 N 1.46903 * 109.46968 * 174.33706 * 5 4 3 9 9 C 1.48726 * 111.01405 * 180.02562 * 8 5 4 10 10 C 1.54369 * 104.51894 * 158.96445 * 9 8 5 11 11 H 1.09004 * 110.32652 * 95.21532 * 10 9 8 12 12 C 1.53001 * 110.32587 * 217.32286 * 10 9 8 13 13 N 1.46500 * 109.47107 * 292.17061 * 12 10 9 14 14 C 1.34779 * 120.00204 * 179.97438 * 13 12 10 15 15 O 1.21276 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99733 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46820 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99938 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99926 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99971 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00379 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47350 * 89.99660 * 22 20 18 24 24 H 1.48501 * 109.47479 * 210.00313 * 22 20 18 25 25 H 1.48510 * 109.46660 * 330.00265 * 22 20 18 26 26 C 1.54268 * 105.15107 * 336.26649 * 10 9 8 27 27 H 1.08998 * 110.32484 * 241.05167 * 26 10 9 28 28 C 1.52996 * 110.32064 * 118.84312 * 26 10 9 29 29 C 1.48557 * 110.99980 * 295.50758 * 8 5 4 30 30 H 1.07996 * 120.00522 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99660 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.99400 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.46942 * 5.00433 * 3 2 1 34 34 H 1.09004 * 109.47666 * 245.00390 * 3 2 1 35 35 H 1.09001 * 109.47301 * 65.18023 * 4 3 2 36 36 H 1.09004 * 109.46620 * 305.18187 * 4 3 2 37 37 H 1.08994 * 109.47371 * 60.00011 * 7 5 4 38 38 H 1.09003 * 109.47340 * 180.02562 * 7 5 4 39 39 H 1.09009 * 109.47155 * 300.00373 * 7 5 4 40 40 H 1.09008 * 110.39028 * 40.23892 * 9 8 5 41 41 H 1.08998 * 110.50769 * 277.75240 * 9 8 5 42 42 H 1.09002 * 109.47441 * 172.16973 * 12 10 9 43 43 H 1.09001 * 109.47382 * 52.17284 * 12 10 9 44 44 H 0.97001 * 119.99659 * 359.97438 * 13 12 10 45 45 H 1.09002 * 109.47371 * 299.99617 * 16 14 13 46 46 H 1.08998 * 109.47403 * 60.00530 * 16 14 13 47 47 H 0.97004 * 120.00165 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.47246 * 60.00825 * 28 26 10 49 49 H 1.09006 * 109.46968 * 180.02562 * 28 26 10 50 50 H 1.09002 * 109.47236 * 300.00047 * 28 26 10 51 51 H 1.09003 * 110.41115 * 82.18396 * 29 8 5 52 52 H 1.08998 * 110.51319 * 319.79759 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3049 0.0000 4 6 3.0352 1.3328 1.1815 5 6 3.7060 2.7058 1.2579 6 1 2.9418 3.4822 1.2934 7 6 4.5863 2.9127 0.0237 8 7 4.5351 2.7791 2.4685 9 6 5.2042 4.1028 2.5773 10 6 5.5611 4.2342 4.0735 11 1 6.5868 3.9090 4.2480 12 6 5.3764 5.6799 4.5390 13 7 6.3794 6.5320 3.8956 14 6 6.4085 7.8539 4.1571 15 8 5.6040 8.3379 4.9247 16 6 7.4400 8.7304 3.4948 17 16 7.2206 10.4410 4.0444 18 6 8.5181 11.2209 3.1427 19 1 9.1520 10.6354 2.4933 20 6 8.7248 12.5877 3.2663 21 7 7.9519 13.3014 4.0575 22 14 10.0999 13.4148 2.3099 23 1 9.5854 13.8631 0.9910 24 1 10.5970 14.5882 3.0723 25 1 11.2106 12.4502 2.1060 26 6 4.5722 3.3047 4.8070 27 1 3.9554 3.8784 5.4986 28 6 5.3306 2.2065 5.5551 29 6 3.6985 2.6899 3.6929 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3587 2.1316 0.0897 34 1 2.6214 1.4025 -0.9314 35 1 3.7956 0.5640 1.0449 36 1 2.4889 1.1435 2.1056 37 1 3.9712 2.8583 -0.8745 38 1 5.0646 3.8907 0.0783 39 1 5.3506 2.1363 -0.0118 40 1 4.5223 4.8988 2.2779 41 1 6.1074 4.1254 1.9676 42 1 5.4962 5.7313 5.6212 43 1 4.3786 6.0245 4.2672 44 1 7.0227 6.1448 3.2813 45 1 8.4379 8.3862 3.7666 46 1 7.3199 8.6787 2.4127 47 1 8.0965 14.2567 4.1441 48 1 6.0004 2.6603 6.2855 49 1 4.6195 1.5583 6.0674 50 1 5.9119 1.6181 4.8452 51 1 3.4685 1.6492 3.9212 52 1 2.7796 3.2633 3.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101736270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:05 Heat of formation + Delta-G solvation = -37.652125 kcal Electronic energy + Delta-G solvation = -26899.005875 eV Core-core repulsion = 23217.163768 eV Total energy + Delta-G solvation = -3681.842106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23936 -38.94752 -37.03457 -34.98257 -33.97605 -32.42607 -31.45195 -30.73881 -28.98863 -28.71687 -26.29394 -25.52437 -25.28015 -23.63356 -21.76024 -20.58489 -20.41942 -20.14015 -19.62119 -17.83896 -16.65059 -16.32979 -16.13953 -15.85570 -15.51309 -15.09196 -14.80278 -14.74771 -14.54989 -14.18582 -13.90260 -13.83179 -13.62926 -13.18299 -13.06815 -12.95719 -12.82164 -12.59096 -12.49163 -12.32544 -12.15092 -11.83755 -11.73385 -11.59919 -11.31978 -11.09139 -11.06319 -11.04114 -11.02211 -10.91665 -10.86743 -10.76771 -10.74293 -9.81239 -9.71880 -9.38721 -9.06877 -8.88022 -8.77047 -8.23192 -6.49691 -6.21455 -3.92003 1.86877 3.04345 3.11302 3.22396 3.28133 3.32472 3.57605 3.71660 4.20668 4.23291 4.25068 4.39029 4.53965 4.57174 4.70758 4.82708 4.88326 4.99092 5.01902 5.04716 5.10293 5.13687 5.17404 5.20248 5.25780 5.29552 5.33691 5.44616 5.45772 5.49136 5.52529 5.60768 5.60870 5.65208 5.66282 5.72845 5.81163 5.85337 5.89287 5.91061 5.92832 5.96709 6.08536 6.14542 6.21788 6.36056 6.53837 6.63062 6.75468 7.59749 7.72048 8.35429 8.62670 9.23853 10.85961 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.001829 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.608874 B =15304.618674 C =16266.981013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.105 4.105 5 C 0.069 3.931 6 H 0.042 0.958 7 C -0.148 4.148 8 N -0.504 5.504 9 C 0.037 3.963 10 C -0.100 4.100 11 H 0.089 0.911 12 C 0.130 3.870 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.089 4.089 27 H 0.080 0.920 28 C -0.139 4.139 29 C 0.036 3.964 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.082 0.918 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 -29.279 -5.874 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.134 4.134 4 C -0.142 4.142 5 C -0.039 4.039 6 H 0.060 0.940 7 C -0.205 4.205 8 N -0.228 5.228 9 C -0.091 4.091 10 C -0.120 4.120 11 H 0.107 0.893 12 C 0.005 3.995 13 N -0.393 5.393 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.108 4.108 27 H 0.098 0.902 28 C -0.196 4.196 29 C -0.091 4.091 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.231 0.769 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.100 0.900 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.634 -28.725 -4.554 30.967 hybrid contribution 1.440 0.450 -1.810 2.356 sum -9.194 -28.275 -6.365 30.406 Atomic orbital electron populations 1.23866 0.96025 1.01826 1.01730 1.22960 0.95991 0.98557 0.99415 1.20822 0.98138 0.95323 0.99085 1.21539 0.97890 0.96734 0.98081 1.21852 0.94197 0.96971 0.90905 0.93971 1.21901 0.99939 1.02293 0.96380 1.65455 1.26243 1.29910 1.01197 1.23228 0.99524 0.90298 0.96048 1.22255 1.00934 0.94077 0.94693 0.89289 1.21384 0.92410 0.87930 0.97755 1.46006 1.36010 1.08019 1.49263 1.20307 0.84967 0.81629 0.81381 1.90700 1.40007 1.73514 1.35075 1.23529 1.00035 1.03394 1.03435 1.85399 1.44864 0.92599 1.60570 1.22871 1.18400 0.95768 1.31346 0.90927 1.24991 0.96878 0.96247 0.95456 1.70021 1.37382 1.07297 1.35595 0.86170 0.81029 0.78815 0.79494 1.20284 1.20740 1.19694 1.21859 0.96250 0.96212 0.96509 0.90163 1.21799 1.00074 0.97898 0.99857 1.23180 0.94815 1.01105 0.90041 0.88605 0.88653 0.87445 0.91646 0.90674 0.91004 0.91819 0.92065 0.92485 0.91738 0.93245 0.89907 0.91407 0.91819 0.76867 0.89224 0.89283 0.92191 0.92556 0.92758 0.91913 0.89972 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.16 14.32 29.01 0.42 -0.75 16 2 C -0.15 -0.91 9.52 -36.03 -0.34 -1.25 16 3 C -0.10 -0.57 5.30 -27.89 -0.15 -0.72 16 4 C -0.10 -0.68 4.72 -26.73 -0.13 -0.80 16 5 C 0.07 0.51 1.91 -67.71 -0.13 0.38 16 6 H 0.04 0.35 7.98 -51.93 -0.41 -0.06 16 7 C -0.15 -1.03 8.82 37.16 0.33 -0.70 16 8 N -0.50 -4.05 5.20 -221.89 -1.15 -5.20 16 9 C 0.04 0.31 4.64 -2.09 -0.01 0.30 16 10 C -0.10 -0.85 2.75 -89.24 -0.25 -1.10 16 11 H 0.09 0.74 7.71 -51.93 -0.40 0.34 16 12 C 0.13 1.49 4.78 -4.04 -0.02 1.47 16 13 N -0.74 -9.71 5.41 -60.29 -0.33 -10.03 16 14 C 0.53 9.91 7.85 -10.99 -0.09 9.83 16 15 O -0.52 -11.88 15.86 5.56 0.09 -11.79 16 16 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.09 -0.68 3.30 -89.25 -0.29 -0.98 16 27 H 0.08 0.63 7.71 -51.93 -0.40 0.23 16 28 C -0.14 -0.97 8.90 37.16 0.33 -0.64 16 29 C 0.04 0.28 5.07 -2.19 -0.01 0.27 16 30 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 32 H 0.11 0.58 8.06 -52.48 -0.42 0.15 16 33 H 0.06 0.41 7.79 -51.92 -0.40 0.00 16 34 H 0.07 0.42 6.84 -51.93 -0.36 0.07 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.44 6.80 -51.93 -0.35 0.08 16 37 H 0.06 0.37 6.70 -51.93 -0.35 0.03 16 38 H 0.06 0.43 6.94 -51.93 -0.36 0.07 16 39 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.05 0.48 7.61 -51.92 -0.39 0.08 16 41 H 0.08 0.67 7.68 -51.93 -0.40 0.27 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 44 H 0.40 4.10 8.36 -40.82 -0.34 3.76 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.08 0.58 7.28 -51.93 -0.38 0.20 16 52 H 0.04 0.35 7.91 -51.93 -0.41 -0.06 16 LS Contribution 424.70 15.07 6.40 6.40 Total: -1.00 -33.52 424.70 -10.97 -44.49 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -9.56 Total: -0.35 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.75 Total: -40.73 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.52 -10.97 -44.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101736270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.842 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds