Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99886 * 2 1 4 4 C 1.53000 * 109.47033 * 125.00038 * 3 2 1 5 5 C 1.53001 * 109.47123 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46867 * 55.00064 * 5 4 3 7 7 C 1.53002 * 109.47112 * 174.99682 * 5 4 3 8 8 N 1.46895 * 109.47498 * 295.00013 * 5 4 3 9 9 C 1.48530 * 111.00283 * 176.15633 * 8 5 4 10 10 C 1.54940 * 103.22832 * 159.72338 * 9 8 5 11 11 H 1.08994 * 110.72364 * 81.12353 * 10 9 8 12 12 C 1.53000 * 110.72463 * 204.22833 * 10 9 8 13 13 N 1.46505 * 109.46893 * 291.14705 * 12 10 9 14 14 C 1.34781 * 119.99400 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00376 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99456 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46988 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99954 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00282 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00125 * 180.02562 * 18 17 16 21 21 N 1.31640 * 119.99718 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00446 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47020 * 59.99494 * 22 20 18 24 24 H 1.48499 * 109.47689 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47166 * 300.00079 * 22 20 18 26 26 C 1.54594 * 103.07932 * 322.67558 * 10 9 8 27 27 H 1.09004 * 110.30606 * 262.95329 * 26 10 9 28 28 C 1.53001 * 110.30778 * 140.78438 * 26 10 9 29 29 C 1.47899 * 111.00329 * 293.55625 * 8 5 4 30 30 H 1.08004 * 119.99927 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00419 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.00058 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47447 * 4.99950 * 3 2 1 34 34 H 1.09004 * 109.47267 * 245.00288 * 3 2 1 35 35 H 1.08994 * 109.46944 * 60.00030 * 4 3 2 36 36 H 1.09000 * 109.47097 * 299.99761 * 4 3 2 37 37 H 1.08998 * 109.46818 * 52.31905 * 7 5 4 38 38 H 1.09002 * 109.47067 * 172.31569 * 7 5 4 39 39 H 1.08998 * 109.47236 * 292.31922 * 7 5 4 40 40 H 1.08999 * 110.67077 * 41.28450 * 9 8 5 41 41 H 1.09005 * 110.66905 * 278.15595 * 9 8 5 42 42 H 1.08998 * 109.47336 * 171.14657 * 12 10 9 43 43 H 1.09006 * 109.47127 * 51.14363 * 12 10 9 44 44 H 0.97000 * 120.00199 * 359.97438 * 13 12 10 45 45 H 1.08998 * 109.47272 * 300.00124 * 16 14 13 46 46 H 1.08998 * 109.47052 * 60.00219 * 16 14 13 47 47 H 0.96999 * 119.99656 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.46968 * 59.99840 * 28 26 10 49 49 H 1.08997 * 109.47099 * 179.97438 * 28 26 10 50 50 H 1.08994 * 109.47293 * 300.00259 * 28 26 10 51 51 H 1.09006 * 109.91316 * 333.50696 * 29 8 5 52 52 H 1.09002 * 109.92015 * 94.79464 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1813 6 1 3.0924 3.4866 1.1811 7 6 4.6800 2.7389 2.4306 8 7 4.6450 2.7351 -0.0181 9 6 5.3343 4.0483 -0.1001 10 6 6.5207 3.7669 -1.0562 11 1 6.1945 3.7998 -2.0956 12 6 7.6575 4.7622 -0.8158 13 7 7.2389 6.0965 -1.2527 14 6 8.0841 7.1398 -1.1355 15 8 9.1912 6.9740 -0.6690 16 6 7.6537 8.5122 -1.5854 17 16 8.9986 9.6897 -1.3009 18 6 8.2448 11.1655 -1.8994 19 1 7.2374 11.1383 -2.2878 20 6 8.9457 12.3633 -1.8718 21 7 10.1734 12.3966 -1.3980 22 14 8.1464 13.9281 -2.5056 23 1 6.9200 14.2117 -1.7176 24 1 9.0966 15.0608 -2.3666 25 1 7.7867 13.7559 -3.9361 26 6 6.9543 2.3358 -0.6638 27 1 7.7938 2.3719 0.0305 28 6 7.3298 1.5339 -1.9116 29 6 5.7183 1.7183 0.0229 30 1 -0.5400 0.9354 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 3.7399 0.5066 1.0920 36 1 2.4772 1.2356 2.1130 37 1 5.2931 1.8406 2.5022 38 1 5.3254 3.6149 2.3643 39 1 4.0483 2.8191 3.3152 40 1 5.6956 4.3551 0.8814 41 1 4.6720 4.8048 -0.5212 42 1 8.5364 4.4536 -1.3819 43 1 7.9000 4.7872 0.2467 44 1 6.3536 6.2290 -1.6262 45 1 7.4120 8.4871 -2.6480 46 1 6.7745 8.8208 -1.0200 47 1 10.6631 13.2337 -1.3784 48 1 8.1545 2.0272 -2.4259 49 1 7.6334 0.5286 -1.6196 50 1 6.4694 1.4748 -2.5781 51 1 5.9525 1.4672 1.0574 52 1 5.4042 0.8249 -0.5168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101736271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = -31.661867 kcal Electronic energy + Delta-G solvation = -27067.686613 eV Core-core repulsion = 23386.104263 eV Total energy + Delta-G solvation = -3681.582349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39588 -38.99280 -36.83015 -35.01038 -33.91946 -32.42005 -31.41631 -30.58489 -29.18335 -28.63735 -26.43503 -25.53965 -25.10552 -23.73439 -21.92372 -20.69913 -20.36488 -20.02606 -19.31464 -17.84550 -17.00016 -16.22917 -16.01483 -15.58835 -15.53669 -15.02874 -14.79671 -14.74132 -14.51672 -14.28921 -13.96342 -13.92219 -13.64637 -13.18097 -13.12640 -13.08821 -12.81874 -12.56639 -12.45864 -12.17704 -12.03398 -11.95155 -11.66929 -11.50632 -11.44283 -11.09116 -11.03758 -11.03408 -10.99677 -10.96092 -10.83557 -10.75012 -10.67922 -9.81641 -9.65588 -9.38202 -9.05628 -8.86727 -8.63237 -8.23124 -6.49210 -6.20826 -3.91408 1.95321 3.04768 3.11884 3.23975 3.28077 3.31938 3.62725 3.72575 4.19987 4.21356 4.25248 4.43321 4.49118 4.64481 4.74093 4.79019 4.88599 5.00250 5.04393 5.06348 5.07579 5.14172 5.19125 5.19500 5.25451 5.26412 5.33668 5.42759 5.45143 5.49408 5.54550 5.59661 5.61620 5.65489 5.73462 5.80838 5.81533 5.82977 5.90243 5.92193 5.95580 5.97707 6.09296 6.15246 6.30145 6.45279 6.59675 6.63358 6.76309 7.59959 7.72807 8.35750 8.63286 9.24318 10.86528 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.001855 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.576217 B =15093.142862 C =15980.737266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.088 4.088 4 C -0.102 4.102 5 C 0.069 3.931 6 H 0.083 0.917 7 C -0.192 4.192 8 N -0.506 5.506 9 C 0.033 3.967 10 C -0.098 4.098 11 H 0.091 0.909 12 C 0.131 3.869 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.095 4.095 27 H 0.078 0.922 28 C -0.141 4.141 29 C 0.032 3.968 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.054 0.946 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.198 -26.801 3.362 31.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.169 4.169 3 C -0.125 4.125 4 C -0.140 4.140 5 C -0.040 4.040 6 H 0.102 0.898 7 C -0.250 4.250 8 N -0.229 5.229 9 C -0.094 4.094 10 C -0.118 4.118 11 H 0.109 0.891 12 C 0.007 3.993 13 N -0.393 5.393 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.114 4.114 27 H 0.096 0.904 28 C -0.199 4.199 29 C -0.096 4.096 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.072 0.928 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.533 -27.058 3.751 30.942 hybrid contribution -1.741 1.334 -0.340 2.219 sum -16.274 -25.723 3.412 30.629 Atomic orbital electron populations 1.23838 0.96064 1.01660 1.02332 1.23060 0.96018 0.98837 0.98943 1.20694 0.97672 0.94444 0.99739 1.21541 0.97661 0.96516 0.98295 1.21868 0.95228 0.98776 0.88080 0.89837 1.22522 1.01100 1.02383 0.99032 1.64979 1.18399 1.03041 1.36484 1.23385 0.95014 0.92163 0.98848 1.22404 0.94533 0.94036 1.00786 0.89087 1.21283 0.96469 0.81412 1.00169 1.46001 1.18541 1.07962 1.66759 1.20308 0.84650 0.85672 0.77646 1.90701 1.20523 1.84795 1.43307 1.23531 1.06692 0.96036 1.04147 1.85390 1.15904 0.99358 1.82742 1.22832 1.03202 0.94150 1.48250 0.90978 1.24991 0.94835 0.98767 0.94976 1.70014 1.09896 1.27412 1.42982 0.86227 0.78951 0.81025 0.79308 1.19952 1.20813 1.19936 1.22008 0.97606 0.93925 0.97877 0.90382 1.21819 1.01687 0.99477 0.96905 1.23122 0.90410 0.96115 0.99942 0.88685 0.88846 0.87769 0.91894 0.89654 0.91860 0.91776 0.91998 0.91866 0.91949 0.92658 0.89943 0.91445 0.91798 0.76835 0.89233 0.89276 0.92143 0.92322 0.92660 0.92183 0.92771 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 14.32 29.01 0.42 -0.84 16 2 C -0.15 -0.97 9.52 -36.03 -0.34 -1.31 16 3 C -0.09 -0.58 5.55 -27.88 -0.15 -0.73 16 4 C -0.10 -0.63 4.62 -26.73 -0.12 -0.75 16 5 C 0.07 0.47 2.37 -67.71 -0.16 0.31 16 6 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 7 C -0.19 -1.30 8.47 37.16 0.31 -0.98 16 8 N -0.51 -3.74 4.73 -222.30 -1.05 -4.79 16 9 C 0.03 0.27 5.66 -1.90 -0.01 0.26 16 10 C -0.10 -0.81 2.63 -88.76 -0.23 -1.05 16 11 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 12 C 0.13 1.48 4.99 -4.04 -0.02 1.46 16 13 N -0.74 -9.62 5.43 -60.29 -0.33 -9.95 16 14 C 0.53 9.87 7.85 -10.98 -0.09 9.78 16 15 O -0.52 -11.83 15.86 5.56 0.09 -11.75 16 16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 C -0.09 -0.70 3.18 -89.10 -0.28 -0.98 16 27 H 0.08 0.60 7.85 -51.93 -0.41 0.20 16 28 C -0.14 -0.96 8.90 37.16 0.33 -0.63 16 29 C 0.03 0.22 5.00 -2.60 -0.01 0.21 16 30 H 0.09 0.57 7.84 -52.48 -0.41 0.16 16 31 H 0.09 0.50 8.06 -52.49 -0.42 0.07 16 32 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.06 0.43 7.79 -51.93 -0.40 0.02 16 34 H 0.09 0.64 7.75 -51.93 -0.40 0.24 16 35 H 0.06 0.39 7.22 -51.93 -0.37 0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.41 6.15 -51.93 -0.32 0.09 16 38 H 0.06 0.49 5.93 -51.93 -0.31 0.18 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.49 5.65 -51.93 -0.29 0.20 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 44 H 0.40 4.08 8.41 -40.82 -0.34 3.74 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.05 0.37 5.25 -51.93 -0.27 0.10 16 52 H 0.08 0.53 7.65 -51.93 -0.40 0.13 16 LS Contribution 421.94 15.07 6.36 6.36 Total: -1.00 -33.24 421.94 -10.76 -44.00 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -9.38 Total: 0.20 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.05 Total: -11.13 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.64 Total: -40.23 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.24 -10.76 -44.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101736271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.335 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds