Wall clock time and date at job start Sat Apr 11 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99910 * 2 1 4 4 C 1.52994 * 109.47267 * 124.99818 * 3 2 1 5 5 C 1.53008 * 109.47246 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47007 * 180.02562 * 5 4 3 7 7 C 1.46904 * 110.99844 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.46950 * 179.97438 * 7 6 5 9 9 C 1.53009 * 109.46914 * 179.97438 * 8 7 6 10 10 H 1.08996 * 110.91041 * 51.09759 * 9 8 7 11 11 C 1.55123 * 111.16155 * 287.17142 * 9 8 7 12 12 N 1.47425 * 104.93656 * 205.13078 * 11 9 8 13 13 C 1.34781 * 125.64085 * 204.03793 * 12 11 9 14 14 O 1.21277 * 120.00307 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99433 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47129 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00319 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99815 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00296 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00283 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99765 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46725 * 90.00062 * 21 19 17 23 23 H 1.48498 * 109.46936 * 209.99844 * 21 19 17 24 24 H 1.48499 * 109.46945 * 330.00088 * 21 19 17 25 25 C 1.47016 * 108.70884 * 24.00285 * 12 11 9 26 26 C 1.54324 * 107.26777 * 358.94080 * 25 12 11 27 27 H 1.09000 * 110.72334 * 96.34904 * 26 25 12 28 28 C 1.53006 * 110.71997 * 219.44116 * 26 25 12 29 29 H 1.08003 * 119.99812 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00262 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.00405 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47176 * 4.99546 * 3 2 1 33 33 H 1.08999 * 109.47139 * 245.00204 * 3 2 1 34 34 H 1.08998 * 109.47086 * 60.00142 * 4 3 2 35 35 H 1.09003 * 109.47141 * 299.99534 * 4 3 2 36 36 H 1.08998 * 109.47026 * 60.00027 * 5 4 3 37 37 H 1.09003 * 109.46606 * 299.99783 * 5 4 3 38 38 H 1.00900 * 110.99780 * 303.94762 * 6 5 4 39 39 H 1.08999 * 109.47009 * 59.99505 * 7 6 5 40 40 H 1.08999 * 109.47026 * 299.99589 * 7 6 5 41 41 H 1.08999 * 109.47504 * 60.00010 * 8 7 6 42 42 H 1.08998 * 109.47566 * 299.99552 * 8 7 6 43 43 H 1.08992 * 110.42060 * 86.20349 * 11 9 8 44 44 H 1.08995 * 110.29683 * 323.99732 * 11 9 8 45 45 H 1.09001 * 109.47528 * 299.99920 * 15 13 12 46 46 H 1.09005 * 109.47533 * 60.00178 * 15 13 12 47 47 H 0.96998 * 119.99842 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.88484 * 239.52333 * 25 12 11 49 49 H 1.09000 * 109.88230 * 118.35420 * 25 12 11 50 50 H 1.09001 * 109.47002 * 56.15618 * 28 26 25 51 51 H 1.08993 * 109.46955 * 176.16055 * 28 26 25 52 52 H 1.09000 * 109.47050 * 296.15884 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6585 1.1820 6 7 4.7327 2.6852 2.3161 7 6 5.4856 3.9462 2.3489 8 6 6.4442 3.9369 3.5413 9 6 7.2288 5.2501 3.5750 10 1 6.5570 6.1063 3.5146 11 6 8.2902 5.2975 2.4448 12 7 9.3238 6.2286 2.9329 13 6 10.1786 6.9282 2.1606 14 8 10.1351 6.8173 0.9537 15 6 11.1885 7.8482 2.7969 16 16 12.1828 8.6373 1.5067 17 6 13.2468 9.6274 2.5030 18 1 13.1509 9.6091 3.5785 19 6 14.2080 10.4309 1.9055 20 7 15.0031 11.1701 2.6497 21 14 14.3733 10.4630 0.0450 22 1 13.4970 11.5251 -0.5114 23 1 15.7847 10.7432 -0.3217 24 1 13.9694 9.1465 -0.5106 25 6 9.2672 6.2682 4.4015 26 6 8.1218 5.3320 4.8411 27 1 8.5080 4.3475 5.1050 28 6 7.3462 5.9386 6.0123 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4027 -0.9314 34 1 3.7399 0.5067 1.0920 35 1 2.4771 1.2358 2.1130 36 1 3.0943 3.4848 1.2717 37 1 4.3573 2.7564 0.2506 38 1 4.2474 2.5314 3.1873 39 1 4.7917 4.7811 2.4474 40 1 6.0547 4.0537 1.4255 41 1 7.1381 3.1020 3.4432 42 1 5.8749 3.8297 4.4645 43 1 7.8470 5.6725 1.5223 44 1 8.7166 4.3073 2.2848 45 1 10.6698 8.6129 3.3751 46 1 11.8392 7.2733 3.4560 47 1 15.6746 11.7318 2.2321 48 1 9.0644 7.2851 4.7374 49 1 10.2119 5.9192 4.8184 50 1 6.9797 6.9263 5.7327 51 1 6.5026 5.2951 6.2615 52 1 8.0040 6.0266 6.8770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103904387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:27 Heat of formation + Delta-G solvation = -42.486624 kcal Electronic energy + Delta-G solvation = -26155.420828 eV Core-core repulsion = 22473.369082 eV Total energy + Delta-G solvation = -3682.051746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12295 -38.10737 -37.39894 -35.74649 -33.57108 -32.43919 -32.39560 -30.93327 -29.62363 -27.31692 -26.45999 -25.62551 -25.13762 -23.29554 -22.00777 -21.20697 -20.36734 -20.21706 -19.41972 -17.68354 -16.79954 -16.59917 -16.31209 -15.88038 -15.40376 -15.12523 -14.96818 -14.75599 -14.54972 -14.29406 -14.03708 -13.91910 -13.80038 -13.35210 -13.17664 -12.96936 -12.79939 -12.66607 -12.51591 -12.28792 -12.07888 -12.00782 -11.87506 -11.72276 -11.64407 -11.32689 -11.25366 -11.13862 -11.00326 -10.93544 -10.89527 -10.58351 -10.55288 -9.84736 -9.79768 -9.49587 -8.99484 -8.85545 -8.54112 -8.48578 -6.91006 -6.28118 -3.99770 1.81147 2.71596 2.97210 3.22474 3.34063 3.51710 3.60389 3.66639 4.13944 4.29306 4.34262 4.35325 4.44864 4.51364 4.68721 4.71359 4.80395 4.86833 4.93406 4.96093 5.03853 5.07335 5.09368 5.11090 5.18311 5.21409 5.26296 5.32478 5.35026 5.36748 5.39578 5.44496 5.56892 5.63286 5.68115 5.69514 5.70202 5.77874 5.80759 5.82221 5.85467 5.95683 6.03332 6.11766 6.15751 6.30001 6.38375 6.59491 6.95568 7.61681 7.94991 8.42382 8.46347 9.18221 10.81127 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.001636 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.168604 B =17106.564837 C =18477.955131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.113 4.113 5 C 0.057 3.943 6 N -0.691 5.691 7 C 0.056 3.944 8 C -0.103 4.103 9 C -0.097 4.097 10 H 0.085 0.915 11 C 0.113 3.887 12 N -0.625 5.625 13 C 0.546 3.454 14 O -0.519 6.519 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.097 3.903 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.104 3.896 26 C -0.098 4.098 27 H 0.087 0.913 28 C -0.142 4.142 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.339 0.661 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.271 0.729 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.059 0.941 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.094 -20.171 4.216 34.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.150 4.150 5 C -0.072 4.072 6 N -0.322 5.322 7 C -0.073 4.073 8 C -0.141 4.141 9 C -0.116 4.116 10 H 0.103 0.897 11 C -0.010 4.010 12 N -0.362 5.362 13 C 0.335 3.665 14 O -0.394 6.394 15 C -0.268 4.268 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.020 4.020 26 C -0.117 4.117 27 H 0.105 0.895 28 C -0.199 4.199 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.156 0.844 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.427 -20.478 2.038 33.495 hybrid contribution -0.353 1.000 1.106 1.532 sum -26.780 -19.478 3.143 33.263 Atomic orbital electron populations 1.23868 0.96015 1.01832 1.01758 1.22973 0.96012 0.98580 0.99372 1.20742 0.98155 0.95380 0.99016 1.21505 0.97555 0.97924 0.98062 1.21998 0.93750 0.96499 0.95002 1.60473 1.29860 1.35443 1.06385 1.22030 0.95915 0.89668 0.99713 1.21476 0.98074 0.96791 0.97777 1.22480 0.96055 0.98584 0.94515 0.89678 1.22269 0.87865 0.93476 0.97379 1.48435 1.35677 1.45136 1.06931 1.19978 0.80416 0.79544 0.86579 1.90701 1.70052 1.64754 1.13866 1.23255 0.99293 1.00510 1.03723 1.84783 1.40650 1.55209 1.11017 1.22310 1.20092 1.28690 0.95743 0.89404 1.24697 0.94008 0.93691 0.98808 1.69936 1.19838 1.26087 1.35867 0.86743 0.78350 0.81475 0.85347 1.19207 1.19916 1.15916 1.22128 0.99003 1.00243 0.80599 1.22247 0.94909 0.99531 0.95006 0.89507 1.21762 0.99953 1.00907 0.97316 0.88562 0.88670 0.87343 0.91618 0.90747 0.90827 0.92062 0.95313 0.90813 0.84401 0.95177 0.90606 0.90541 0.91508 0.90605 0.91515 0.88645 0.88575 0.91950 0.91100 0.91180 0.92271 0.92225 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.02 14.32 29.01 0.42 -0.61 16 2 C -0.15 -0.82 9.52 -36.03 -0.34 -1.17 16 3 C -0.10 -0.50 5.66 -27.89 -0.16 -0.66 16 4 C -0.11 -0.61 5.46 -26.73 -0.15 -0.76 16 5 C 0.06 0.36 5.69 -3.82 -0.02 0.33 16 6 N -0.69 -4.64 6.50 -113.77 -0.74 -5.38 16 7 C 0.06 0.39 5.59 -3.82 -0.02 0.37 16 8 C -0.10 -0.67 4.99 -26.73 -0.13 -0.80 16 9 C -0.10 -0.78 2.46 -88.35 -0.22 -1.00 16 10 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 11 C 0.11 1.31 5.88 -2.41 -0.01 1.30 16 12 N -0.62 -8.91 3.33 -170.39 -0.57 -9.48 16 13 C 0.55 10.39 7.87 -10.98 -0.09 10.31 16 14 O -0.52 -11.77 16.12 5.56 0.09 -11.68 16 15 C -0.12 -2.37 5.35 36.01 0.19 -2.18 16 16 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 17 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 20 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 21 Si 0.86 21.98 27.74 -169.99 -4.72 17.27 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 25 C 0.10 1.11 6.09 -3.07 -0.02 1.09 16 26 C -0.10 -0.76 3.01 -88.78 -0.27 -1.03 16 27 H 0.09 0.63 8.04 -51.93 -0.42 0.21 16 28 C -0.14 -0.90 9.14 37.16 0.34 -0.56 16 29 H 0.10 0.42 8.06 -52.48 -0.42 -0.01 16 30 H 0.09 0.45 7.84 -52.48 -0.41 0.04 16 31 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.34 1.88 8.73 -39.29 -0.34 1.54 16 39 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.63 7.76 -51.93 -0.40 0.23 16 41 H 0.08 0.55 7.97 -51.93 -0.41 0.14 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 44 H 0.07 0.76 7.91 -51.93 -0.41 0.35 16 45 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 46 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 51 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 431.90 15.07 6.51 6.51 Total: -1.00 -33.74 431.90 -10.87 -44.61 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -9.96 Total: -2.74 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.26 Total: -7.47 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.53 Total: -40.80 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.51 Total: 6.51 kcal Total: -33.74 -10.87 -44.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.123 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds