Wall clock time and date at job start Sat Apr 11 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99910 * 2 1 4 4 C 1.52994 * 109.47267 * 124.99818 * 3 2 1 5 5 C 1.53008 * 109.47246 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47007 * 180.02562 * 5 4 3 7 7 C 1.46904 * 110.99844 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.46950 * 179.97438 * 7 6 5 9 9 C 1.53009 * 109.46914 * 179.97438 * 8 7 6 10 10 H 1.08996 * 110.91041 * 51.09759 * 9 8 7 11 11 C 1.55123 * 111.16155 * 287.17142 * 9 8 7 12 12 N 1.47425 * 104.93656 * 205.13078 * 11 9 8 13 13 C 1.34781 * 125.64085 * 204.03793 * 12 11 9 14 14 O 1.21277 * 120.00307 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99433 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47129 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00319 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99815 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00296 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00283 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99765 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46725 * 90.00062 * 21 19 17 23 23 H 1.48498 * 109.46936 * 209.99844 * 21 19 17 24 24 H 1.48499 * 109.46945 * 330.00088 * 21 19 17 25 25 C 1.47016 * 108.70884 * 24.00285 * 12 11 9 26 26 C 1.54324 * 107.26777 * 358.94080 * 25 12 11 27 27 H 1.09000 * 110.72334 * 96.34904 * 26 25 12 28 28 C 1.53006 * 110.71997 * 219.44116 * 26 25 12 29 29 H 1.08003 * 119.99812 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00262 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.00405 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47176 * 4.99546 * 3 2 1 33 33 H 1.08999 * 109.47139 * 245.00204 * 3 2 1 34 34 H 1.08998 * 109.47086 * 60.00142 * 4 3 2 35 35 H 1.09003 * 109.47141 * 299.99534 * 4 3 2 36 36 H 1.08998 * 109.47026 * 60.00027 * 5 4 3 37 37 H 1.09003 * 109.46606 * 299.99783 * 5 4 3 38 38 H 1.00900 * 110.99780 * 303.94762 * 6 5 4 39 39 H 1.08999 * 109.47009 * 59.99505 * 7 6 5 40 40 H 1.08999 * 109.47026 * 299.99589 * 7 6 5 41 41 H 1.08999 * 109.47504 * 60.00010 * 8 7 6 42 42 H 1.08998 * 109.47566 * 299.99552 * 8 7 6 43 43 H 1.08992 * 110.42060 * 86.20349 * 11 9 8 44 44 H 1.08995 * 110.29683 * 323.99732 * 11 9 8 45 45 H 1.09001 * 109.47528 * 299.99920 * 15 13 12 46 46 H 1.09005 * 109.47533 * 60.00178 * 15 13 12 47 47 H 0.96998 * 119.99842 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.88484 * 239.52333 * 25 12 11 49 49 H 1.09000 * 109.88230 * 118.35420 * 25 12 11 50 50 H 1.09001 * 109.47002 * 56.15618 * 28 26 25 51 51 H 1.08993 * 109.46955 * 176.16055 * 28 26 25 52 52 H 1.09000 * 109.47050 * 296.15884 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6585 1.1820 6 7 4.7327 2.6852 2.3161 7 6 5.4856 3.9462 2.3489 8 6 6.4442 3.9369 3.5413 9 6 7.2288 5.2501 3.5750 10 1 6.5570 6.1063 3.5146 11 6 8.2902 5.2975 2.4448 12 7 9.3238 6.2286 2.9329 13 6 10.1786 6.9282 2.1606 14 8 10.1351 6.8173 0.9537 15 6 11.1885 7.8482 2.7969 16 16 12.1828 8.6373 1.5067 17 6 13.2468 9.6274 2.5030 18 1 13.1509 9.6091 3.5785 19 6 14.2080 10.4309 1.9055 20 7 15.0031 11.1701 2.6497 21 14 14.3733 10.4630 0.0450 22 1 13.4970 11.5251 -0.5114 23 1 15.7847 10.7432 -0.3217 24 1 13.9694 9.1465 -0.5106 25 6 9.2672 6.2682 4.4015 26 6 8.1218 5.3320 4.8411 27 1 8.5080 4.3475 5.1050 28 6 7.3462 5.9386 6.0123 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4027 -0.9314 34 1 3.7399 0.5067 1.0920 35 1 2.4771 1.2358 2.1130 36 1 3.0943 3.4848 1.2717 37 1 4.3573 2.7564 0.2506 38 1 4.2474 2.5314 3.1873 39 1 4.7917 4.7811 2.4474 40 1 6.0547 4.0537 1.4255 41 1 7.1381 3.1020 3.4432 42 1 5.8749 3.8297 4.4645 43 1 7.8470 5.6725 1.5223 44 1 8.7166 4.3073 2.2848 45 1 10.6698 8.6129 3.3751 46 1 11.8392 7.2733 3.4560 47 1 15.6746 11.7318 2.2321 48 1 9.0644 7.2851 4.7374 49 1 10.2119 5.9192 4.8184 50 1 6.9797 6.9263 5.7327 51 1 6.5026 5.2951 6.2615 52 1 8.0040 6.0266 6.8770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103904387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:26 Heat of formation + Delta-G solvation = -62.906460 kcal Electronic energy + Delta-G solvation = -26156.306299 eV Core-core repulsion = 22473.369082 eV Total energy + Delta-G solvation = -3682.937216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24299 -39.19329 -38.03958 -36.27576 -34.69761 -34.48486 -33.04246 -31.75195 -30.81191 -28.20380 -27.81504 -27.26549 -25.80359 -24.01460 -22.54194 -21.87885 -21.06137 -20.79317 -20.62169 -19.62277 -18.04748 -17.58193 -17.13816 -17.09841 -16.61612 -16.39567 -15.92919 -15.69243 -15.46339 -15.35339 -14.93655 -14.91292 -14.78602 -14.50053 -14.29410 -13.92660 -13.63203 -13.57335 -13.45077 -13.35702 -13.16482 -13.02903 -12.93609 -12.68602 -12.56384 -12.40010 -12.35830 -12.23022 -11.88771 -11.79758 -11.65763 -11.53741 -11.49281 -11.19807 -11.18376 -11.03297 -10.56962 -10.20139 -9.74350 -9.37482 -9.03582 -8.53201 -6.24961 0.93919 1.29950 1.41140 1.43933 1.47489 1.51974 2.04175 2.23803 2.65771 2.85068 3.11496 3.36789 3.53353 3.76325 3.81519 3.94549 4.03731 4.12040 4.22506 4.25915 4.28608 4.31049 4.36496 4.41808 4.47578 4.50221 4.57694 4.58928 4.63849 4.67036 4.74909 4.82548 4.85671 4.90897 4.92286 4.98302 5.05796 5.09977 5.21092 5.23038 5.24939 5.29850 5.36835 5.42579 5.53154 5.69141 5.76575 5.90314 6.06752 6.09329 6.33396 6.51285 6.91859 7.02040 8.59244 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.001636 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.168604 B =17106.564837 C =18477.955131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.094 4.094 4 C -0.104 4.104 5 C 0.058 3.942 6 N -0.696 5.696 7 C 0.058 3.942 8 C -0.092 4.092 9 C -0.082 4.082 10 H 0.087 0.913 11 C 0.107 3.893 12 N -0.616 5.616 13 C 0.545 3.455 14 O -0.565 6.565 15 C -0.102 4.102 16 S -0.175 6.175 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.049 3.951 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.239 1.239 25 C 0.091 3.909 26 C -0.087 4.087 27 H 0.100 0.900 28 C -0.138 4.138 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.348 0.652 39 H 0.032 0.968 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.278 0.722 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.054 0.946 51 H 0.076 0.924 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.875 -21.499 5.205 36.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.131 4.131 4 C -0.142 4.142 5 C -0.071 4.071 6 N -0.328 5.328 7 C -0.072 4.072 8 C -0.130 4.130 9 C -0.102 4.102 10 H 0.105 0.895 11 C -0.015 4.015 12 N -0.350 5.350 13 C 0.333 3.667 14 O -0.444 6.444 15 C -0.253 4.253 16 S 0.051 5.949 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.157 4.157 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.186 1.186 23 H -0.181 1.181 24 H -0.163 1.163 25 C -0.031 4.031 26 C -0.105 4.105 27 H 0.118 0.882 28 C -0.196 4.196 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.166 0.834 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.095 0.905 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -28.237 -21.828 3.085 35.824 hybrid contribution 0.094 1.334 0.924 1.625 sum -28.143 -20.494 4.008 35.044 Atomic orbital electron populations 1.24014 0.96053 1.02405 1.01245 1.23061 0.96255 0.98753 0.99851 1.20724 0.98107 0.95475 0.98836 1.21413 0.97301 0.97127 0.98336 1.21973 0.93622 0.97024 0.94492 1.60447 1.30183 1.35181 1.06950 1.21968 0.95980 0.89993 0.99221 1.21388 0.97741 0.95452 0.98417 1.22413 0.95116 0.99693 0.92969 0.89496 1.22500 0.88092 0.92648 0.98304 1.48424 1.34419 1.43692 1.08480 1.19677 0.80934 0.79926 0.86169 1.90678 1.71590 1.66545 1.15623 1.23201 0.99185 1.00988 1.01892 1.84712 1.41283 1.55360 1.13506 1.22430 1.20916 1.29352 0.95025 0.91944 1.25520 0.93710 0.93338 1.03084 1.70007 1.20605 1.26902 1.37804 0.85893 0.79209 0.81311 0.80122 1.18628 1.18079 1.16271 1.22497 1.00868 1.01599 0.78152 1.22243 0.93649 0.99486 0.95171 0.88183 1.21751 1.00365 1.00902 0.96574 0.87822 0.88365 0.87052 0.91435 0.90970 0.91483 0.91632 0.95111 0.91891 0.83397 0.94958 0.92364 0.90854 0.89355 0.92214 0.91164 0.87285 0.87245 0.91292 0.90653 0.90554 0.92728 0.90491 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 14.32 67.78 0.97 -0.89 16 2 C -0.16 -1.60 9.52 25.65 0.24 -1.36 16 3 C -0.09 -0.90 5.66 29.85 0.17 -0.74 16 4 C -0.10 -1.02 5.46 30.59 0.17 -0.86 16 5 C 0.06 0.67 5.69 86.31 0.49 1.16 16 6 N -0.70 -8.22 6.50 -513.87 -3.34 -11.56 16 7 C 0.06 0.72 5.59 86.30 0.48 1.20 16 8 C -0.09 -0.95 4.99 30.60 0.15 -0.79 16 9 C -0.08 -1.13 2.46 -9.33 -0.02 -1.15 16 10 H 0.09 1.23 8.05 -2.39 -0.02 1.21 16 11 C 0.11 2.37 5.88 86.93 0.51 2.88 16 12 N -0.62 -16.93 3.33 -811.39 -2.70 -19.63 16 13 C 0.55 20.62 7.87 87.66 0.69 21.31 16 14 O -0.57 -26.00 16.12 -3.02 -0.05 -26.05 16 15 C -0.10 -4.10 5.35 71.24 0.38 -3.72 16 16 S -0.18 -9.14 18.55 -56.49 -1.05 -10.19 16 17 C -0.53 -31.33 10.04 67.95 0.68 -30.64 16 18 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 19 C 0.05 2.91 5.50 84.86 0.47 3.38 16 20 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 21 Si 0.91 45.49 27.74 68.60 1.90 47.39 16 22 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.24 -11.96 6.74 99.48 0.67 -11.29 16 25 C 0.09 1.76 6.09 86.73 0.53 2.28 16 26 C -0.09 -1.08 3.01 -9.60 -0.03 -1.11 16 27 H 0.10 1.06 8.04 -2.39 -0.02 1.04 16 28 C -0.14 -1.27 9.14 71.98 0.66 -0.62 16 29 H 0.10 0.77 8.06 -2.91 -0.02 0.75 16 30 H 0.10 0.82 7.84 -2.91 -0.02 0.80 16 31 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.07 0.62 7.79 -2.38 -0.02 0.60 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.35 3.05 8.73 -89.69 -0.78 2.27 16 39 H 0.03 0.39 8.14 -2.39 -0.02 0.38 16 40 H 0.06 0.94 7.76 -2.39 -0.02 0.92 16 41 H 0.07 0.86 7.97 -2.39 -0.02 0.84 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 1.54 8.04 -2.39 -0.02 1.52 16 44 H 0.07 1.54 7.91 -2.39 -0.02 1.52 16 45 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 46 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 47 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 48 H 0.08 1.43 7.80 -2.39 -0.02 1.41 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 51 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -73.65 431.90 1.64 -72.01 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.03 Total: 13.37 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 6.54 Total: -9.64 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -5.74 Total: -86.89 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.19 kcal Total: -73.65 1.64 -72.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.106 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds