Wall clock time and date at job start Sat Apr 11 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.29663 * 2 1 4 4 C 1.54390 * 110.34306 * 237.71570 * 2 1 3 5 5 N 1.48140 * 104.61426 * 264.99121 * 4 2 1 6 6 C 1.34776 * 127.83673 * 140.43741 * 5 4 2 7 7 O 1.21285 * 119.99878 * 180.02562 * 6 5 4 8 8 C 1.50702 * 120.00151 * 0.02562 * 6 5 4 9 9 S 1.80998 * 109.47337 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00081 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00091 * 0.02562 * 10 9 8 12 12 C 1.38797 * 120.00291 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99708 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00333 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47080 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47463 * 119.99877 * 14 12 10 17 17 H 1.48498 * 109.46977 * 239.99758 * 14 12 10 18 18 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 19 19 C 1.54281 * 110.34387 * 122.17261 * 2 1 3 20 20 H 1.09002 * 110.34302 * 0.02562 * 19 2 1 21 21 C 1.52998 * 110.34397 * 237.84933 * 19 2 1 22 22 C 1.52994 * 109.47213 * 176.47750 * 21 19 2 23 23 N 1.46897 * 109.47422 * 180.02562 * 22 21 19 24 24 C 1.46903 * 111.00283 * 180.02562 * 23 22 21 25 25 C 1.53008 * 109.47093 * 179.97438 * 24 23 22 26 26 C 1.53779 * 113.61164 * 274.13459 * 25 24 23 27 27 C 1.53953 * 87.01769 * 220.04811 * 26 25 24 28 28 C 1.53781 * 113.61060 * 176.52746 * 25 24 23 29 29 H 1.08996 * 109.47126 * 297.82178 * 1 2 3 30 30 H 1.08995 * 109.47333 * 57.82836 * 1 2 3 31 31 H 1.09000 * 109.46800 * 177.82636 * 1 2 3 32 32 H 1.08998 * 110.40404 * 23.77673 * 4 2 1 33 33 H 1.09004 * 110.40272 * 146.20913 * 4 2 1 34 34 H 1.09000 * 109.47213 * 300.00266 * 8 6 5 35 35 H 1.09003 * 109.46762 * 60.00370 * 8 6 5 36 36 H 0.97002 * 120.00197 * 180.02562 * 13 12 10 37 37 H 1.08990 * 110.41068 * 280.80521 * 18 5 4 38 38 H 1.09000 * 110.40585 * 158.36660 * 18 5 4 39 39 H 1.09003 * 109.47249 * 296.47571 * 21 19 2 40 40 H 1.09002 * 109.47127 * 56.47409 * 21 19 2 41 41 H 1.09002 * 109.47391 * 300.00046 * 22 21 19 42 42 H 1.09002 * 109.47352 * 59.99797 * 22 21 19 43 43 H 1.00904 * 111.00086 * 303.95034 * 23 22 21 44 44 H 1.08997 * 109.47056 * 299.99492 * 24 23 22 45 45 H 1.08998 * 109.47144 * 59.99688 * 24 23 22 46 46 H 1.08996 * 112.84912 * 45.33152 * 25 24 23 47 47 H 1.08993 * 113.61893 * 334.56930 * 26 25 24 48 48 H 1.09000 * 113.61514 * 105.47470 * 26 25 24 49 49 H 1.08999 * 113.54118 * 270.81529 * 27 26 25 50 50 H 1.08997 * 113.74340 * 139.94116 * 27 26 25 51 51 H 1.09002 * 113.61331 * 254.52704 * 28 25 24 52 52 H 1.08996 * 113.61774 * 25.43072 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7732 -1.2238 5 7 2.3141 -2.1444 -0.7206 6 6 2.0779 -3.3117 -1.3515 7 8 2.3362 -4.3614 -0.8015 8 6 1.4930 -3.3127 -2.7404 9 16 1.2967 -5.0191 -3.3112 10 6 0.6164 -4.7304 -4.9106 11 1 0.4476 -3.7195 -5.2513 12 6 0.2974 -5.8021 -5.7330 13 7 0.5036 -7.0341 -5.3180 14 14 -0.4232 -5.4960 -7.4290 15 1 -0.5550 -4.0341 -7.6543 16 1 0.4734 -6.0773 -8.4601 17 1 -1.7614 -6.1331 -7.5205 18 6 2.8804 -1.9415 0.6332 19 6 2.0664 -0.7703 1.2244 20 1 1.2399 -1.1490 1.8257 21 6 2.9671 0.1336 2.0687 22 6 3.4166 -0.6211 3.3214 23 7 4.2808 0.2469 4.1323 24 6 4.7331 -0.4463 5.3459 25 6 5.6293 0.4872 6.1624 26 6 7.1046 0.4593 5.7293 27 6 7.4616 0.5229 7.2255 28 6 6.0897 -0.1154 7.5003 29 1 -0.3633 0.4796 0.9088 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3223 -0.7889 -2.0198 33 1 2.9950 -0.3255 -1.5790 34 1 0.5208 -2.8200 -2.7256 35 1 2.1608 -2.7785 -3.4162 36 1 0.2810 -7.7832 -5.8928 37 1 3.9355 -1.6763 0.5681 38 1 2.7496 -2.8387 1.2383 39 1 3.8414 0.4223 1.4853 40 1 2.4144 1.0264 2.3610 41 1 2.5423 -0.9099 3.9048 42 1 3.9693 -1.5139 3.0290 43 1 5.0658 0.5808 3.5933 44 1 3.8682 -0.7345 5.9434 45 1 5.2955 -1.3374 5.0672 46 1 5.2202 1.4932 6.2544 47 1 7.4011 -0.4731 5.2489 48 1 7.4117 1.3419 5.1684 49 1 7.5547 1.5393 7.6081 50 1 8.3023 -0.1127 7.5035 51 1 5.5786 0.3040 8.3669 52 1 6.1082 -1.2052 7.5050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103904988.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:37 Heat of formation + Delta-G solvation = -34.097479 kcal Electronic energy + Delta-G solvation = -26651.840926 eV Core-core repulsion = 22970.152961 eV Total energy + Delta-G solvation = -3681.687965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.06622 -39.40893 -37.84348 -36.17515 -33.15603 -32.42911 -31.89845 -29.84351 -28.30963 -26.57048 -26.19260 -25.90070 -25.41580 -23.67204 -22.51454 -21.41915 -20.00640 -19.74685 -19.33062 -17.68132 -16.63792 -16.55657 -16.07770 -15.80213 -15.52047 -15.04867 -14.86127 -14.80408 -14.51394 -14.22689 -13.89902 -13.71865 -13.38802 -13.34249 -13.00002 -12.88203 -12.75774 -12.58003 -12.48732 -12.32077 -11.97427 -11.84122 -11.80348 -11.58973 -11.37572 -11.07283 -11.03955 -11.01495 -10.91409 -10.77590 -10.76015 -10.72608 -10.58970 -10.39911 -9.80184 -9.38405 -9.07487 -8.79433 -8.54560 -8.22616 -6.50137 -6.21762 -3.92315 2.92102 3.07561 3.21418 3.26367 3.31249 3.61420 3.69511 4.18090 4.19894 4.26457 4.32401 4.37793 4.42881 4.47491 4.56128 4.83366 4.91847 4.99550 5.05933 5.09682 5.12523 5.13499 5.18262 5.26313 5.30113 5.31635 5.34204 5.39413 5.41954 5.47199 5.48216 5.52074 5.58248 5.59131 5.67664 5.69159 5.73532 5.79204 5.84036 5.89774 5.93253 5.95213 6.03054 6.08482 6.13227 6.17710 6.43662 6.66229 7.01968 7.59818 7.75555 8.35428 8.57982 9.23608 10.85756 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.001682 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.918121 B =16640.687844 C =17399.543903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.086 0.914 4 C 0.103 3.897 5 N -0.629 5.629 6 C 0.554 3.446 7 O -0.518 6.518 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.111 3.889 19 C -0.098 4.098 20 H 0.083 0.917 21 C -0.104 4.104 22 C 0.054 3.946 23 N -0.690 5.690 24 C 0.067 3.933 25 C -0.108 4.108 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.137 4.137 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.339 0.661 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 20.698 21.493 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.020 4.020 5 N -0.366 5.366 6 C 0.343 3.657 7 O -0.392 6.392 8 C -0.296 4.296 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.013 4.013 19 C -0.118 4.118 20 H 0.101 0.899 21 C -0.143 4.143 22 C -0.075 4.075 23 N -0.320 5.320 24 C -0.062 4.062 25 C -0.127 4.127 26 C -0.179 4.179 27 C -0.180 4.180 28 C -0.175 4.175 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.157 0.843 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.116 0.884 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.550 19.116 22.513 30.747 hybrid contribution -0.091 0.795 -2.121 2.267 sum 8.460 19.912 20.392 29.730 Atomic orbital electron populations 1.21856 0.94185 1.02409 1.01762 1.22151 0.96555 0.99163 0.94112 0.89602 1.22452 1.00691 0.82033 0.96837 1.48985 1.64900 1.05506 1.17186 1.19988 0.77137 0.81549 0.87069 1.90707 1.51256 1.30145 1.67119 1.23497 1.03009 1.08283 0.94859 1.85401 1.82908 0.97329 1.17824 1.22901 1.48595 0.95561 1.01205 0.90887 1.24992 0.95303 0.94419 0.98861 1.70031 1.45251 0.98076 1.36918 0.86114 0.78686 0.78450 0.82230 1.19610 1.20558 1.20558 1.22322 0.96588 0.98308 0.84036 1.22200 0.98345 0.95251 0.95977 0.89868 1.21603 0.99336 0.98467 0.94851 1.22038 0.97142 0.94196 0.94089 1.60501 1.23672 1.39518 1.08345 1.21968 0.98045 0.94676 0.91545 1.22592 0.94290 1.00259 0.95552 1.23040 0.96221 1.02111 0.96566 1.22819 0.97393 1.01139 0.96648 1.22915 0.96768 1.00526 0.97265 0.92462 0.92357 0.92257 0.89924 0.91260 0.89335 0.89362 0.92239 0.91682 0.90209 0.91759 0.90638 0.90926 0.94907 0.84316 0.90989 0.95109 0.88435 0.90338 0.91458 0.90240 0.91553 0.91428 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.90 37.16 0.33 -0.96 16 2 C -0.10 -0.86 3.31 -89.22 -0.30 -1.16 16 3 H 0.09 0.59 7.71 -51.93 -0.40 0.19 16 4 C 0.10 1.12 6.46 -2.41 -0.02 1.11 16 5 N -0.63 -9.24 3.32 -169.31 -0.56 -9.80 16 6 C 0.55 10.96 7.93 -10.98 -0.09 10.88 16 7 O -0.52 -12.32 16.13 5.55 0.09 -12.23 16 8 C -0.15 -3.06 5.14 36.01 0.18 -2.87 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 14 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.11 1.31 5.80 -2.41 -0.01 1.30 16 19 C -0.10 -0.86 2.73 -89.22 -0.24 -1.11 16 20 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 21 C -0.10 -0.73 4.66 -26.74 -0.12 -0.86 16 22 C 0.05 0.41 5.54 -3.83 -0.02 0.39 16 23 N -0.69 -4.91 6.50 -113.78 -0.74 -5.65 16 24 C 0.07 0.45 5.51 -3.82 -0.02 0.43 16 25 C -0.11 -0.64 3.89 -89.80 -0.35 -0.99 16 26 C -0.14 -0.79 7.65 -25.83 -0.20 -0.99 16 27 C -0.14 -0.75 8.09 -25.83 -0.21 -0.95 16 28 C -0.14 -0.75 7.65 -25.92 -0.20 -0.95 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.92 7.02 -51.93 -0.36 0.55 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.72 7.95 -51.92 -0.41 1.31 16 35 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 37 H 0.06 0.70 7.78 -51.93 -0.40 0.30 16 38 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 39 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.27 7.54 -51.93 -0.39 -0.12 16 43 H 0.34 2.19 8.73 -39.29 -0.34 1.85 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.22 7.87 -51.93 -0.41 -0.19 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 LS Contribution 425.05 15.07 6.41 6.41 Total: -1.00 -33.73 425.05 -12.19 -45.92 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -9.82 Total: -1.88 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.06 Total: -9.76 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.57 Total: -41.02 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.73 -12.19 -45.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904988.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.825 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds