Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.29663 * 2 1 4 4 C 1.54390 * 110.34306 * 237.71570 * 2 1 3 5 5 N 1.48140 * 104.61426 * 264.99121 * 4 2 1 6 6 C 1.34776 * 127.83673 * 140.43741 * 5 4 2 7 7 O 1.21285 * 119.99878 * 180.02562 * 6 5 4 8 8 C 1.50702 * 120.00151 * 0.02562 * 6 5 4 9 9 S 1.80998 * 109.47337 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00081 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00091 * 0.02562 * 10 9 8 12 12 C 1.38797 * 120.00291 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99708 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00333 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47080 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47463 * 119.99877 * 14 12 10 17 17 H 1.48498 * 109.46977 * 239.99758 * 14 12 10 18 18 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 19 19 C 1.54281 * 110.34387 * 122.17261 * 2 1 3 20 20 H 1.09002 * 110.34302 * 0.02562 * 19 2 1 21 21 C 1.52998 * 110.34397 * 237.84933 * 19 2 1 22 22 C 1.52994 * 109.47213 * 176.47750 * 21 19 2 23 23 N 1.46897 * 109.47422 * 180.02562 * 22 21 19 24 24 C 1.46903 * 111.00283 * 180.02562 * 23 22 21 25 25 C 1.53008 * 109.47093 * 179.97438 * 24 23 22 26 26 C 1.53779 * 113.61164 * 274.13459 * 25 24 23 27 27 C 1.53953 * 87.01769 * 220.04811 * 26 25 24 28 28 C 1.53781 * 113.61060 * 176.52746 * 25 24 23 29 29 H 1.08996 * 109.47126 * 297.82178 * 1 2 3 30 30 H 1.08995 * 109.47333 * 57.82836 * 1 2 3 31 31 H 1.09000 * 109.46800 * 177.82636 * 1 2 3 32 32 H 1.08998 * 110.40404 * 23.77673 * 4 2 1 33 33 H 1.09004 * 110.40272 * 146.20913 * 4 2 1 34 34 H 1.09000 * 109.47213 * 300.00266 * 8 6 5 35 35 H 1.09003 * 109.46762 * 60.00370 * 8 6 5 36 36 H 0.97002 * 120.00197 * 180.02562 * 13 12 10 37 37 H 1.08990 * 110.41068 * 280.80521 * 18 5 4 38 38 H 1.09000 * 110.40585 * 158.36660 * 18 5 4 39 39 H 1.09003 * 109.47249 * 296.47571 * 21 19 2 40 40 H 1.09002 * 109.47127 * 56.47409 * 21 19 2 41 41 H 1.09002 * 109.47391 * 300.00046 * 22 21 19 42 42 H 1.09002 * 109.47352 * 59.99797 * 22 21 19 43 43 H 1.00904 * 111.00086 * 303.95034 * 23 22 21 44 44 H 1.08997 * 109.47056 * 299.99492 * 24 23 22 45 45 H 1.08998 * 109.47144 * 59.99688 * 24 23 22 46 46 H 1.08996 * 112.84912 * 45.33152 * 25 24 23 47 47 H 1.08993 * 113.61893 * 334.56930 * 26 25 24 48 48 H 1.09000 * 113.61514 * 105.47470 * 26 25 24 49 49 H 1.08999 * 113.54118 * 270.81529 * 27 26 25 50 50 H 1.08997 * 113.74340 * 139.94116 * 27 26 25 51 51 H 1.09002 * 113.61331 * 254.52704 * 28 25 24 52 52 H 1.08996 * 113.61774 * 25.43072 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7732 -1.2238 5 7 2.3141 -2.1444 -0.7206 6 6 2.0779 -3.3117 -1.3515 7 8 2.3362 -4.3614 -0.8015 8 6 1.4930 -3.3127 -2.7404 9 16 1.2967 -5.0191 -3.3112 10 6 0.6164 -4.7304 -4.9106 11 1 0.4476 -3.7195 -5.2513 12 6 0.2974 -5.8021 -5.7330 13 7 0.5036 -7.0341 -5.3180 14 14 -0.4232 -5.4960 -7.4290 15 1 -0.5550 -4.0341 -7.6543 16 1 0.4734 -6.0773 -8.4601 17 1 -1.7614 -6.1331 -7.5205 18 6 2.8804 -1.9415 0.6332 19 6 2.0664 -0.7703 1.2244 20 1 1.2399 -1.1490 1.8257 21 6 2.9671 0.1336 2.0687 22 6 3.4166 -0.6211 3.3214 23 7 4.2808 0.2469 4.1323 24 6 4.7331 -0.4463 5.3459 25 6 5.6293 0.4872 6.1624 26 6 7.1046 0.4593 5.7293 27 6 7.4616 0.5229 7.2255 28 6 6.0897 -0.1154 7.5003 29 1 -0.3633 0.4796 0.9088 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3223 -0.7889 -2.0198 33 1 2.9950 -0.3255 -1.5790 34 1 0.5208 -2.8200 -2.7256 35 1 2.1608 -2.7785 -3.4162 36 1 0.2810 -7.7832 -5.8928 37 1 3.9355 -1.6763 0.5681 38 1 2.7496 -2.8387 1.2383 39 1 3.8414 0.4223 1.4853 40 1 2.4144 1.0264 2.3610 41 1 2.5423 -0.9099 3.9048 42 1 3.9693 -1.5139 3.0290 43 1 5.0658 0.5808 3.5933 44 1 3.8682 -0.7345 5.9434 45 1 5.2955 -1.3374 5.0672 46 1 5.2202 1.4932 6.2544 47 1 7.4011 -0.4731 5.2489 48 1 7.4117 1.3419 5.1684 49 1 7.5547 1.5393 7.6081 50 1 8.3023 -0.1127 7.5035 51 1 5.5786 0.3040 8.3669 52 1 6.1082 -1.2052 7.5050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103904988.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -54.571660 kcal Electronic energy + Delta-G solvation = -26652.728754 eV Core-core repulsion = 22970.152961 eV Total energy + Delta-G solvation = -3682.575792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.19404 -39.90706 -39.10473 -36.85240 -34.60752 -34.19417 -32.64690 -31.24805 -29.15391 -27.73495 -27.41959 -26.86228 -26.41495 -24.49685 -23.03889 -22.14087 -20.87192 -20.70573 -20.20133 -19.56332 -18.06368 -17.24503 -17.09156 -16.90389 -16.69167 -16.29175 -16.02181 -15.73841 -15.60359 -15.33918 -15.20396 -14.58809 -14.41575 -14.22767 -14.12171 -13.86909 -13.70019 -13.39104 -13.32180 -13.19497 -13.11216 -12.96627 -12.92259 -12.76408 -12.61914 -12.38691 -12.31556 -12.06206 -11.76901 -11.61667 -11.52669 -11.47010 -11.35261 -11.17481 -11.06621 -10.97025 -10.91541 -10.30569 -9.77327 -9.37834 -8.70578 -8.36473 -6.15647 1.21952 1.40762 1.43632 1.53603 1.56178 2.07066 2.25447 2.97812 3.09692 3.23664 3.53258 3.58117 3.71725 3.79978 3.84267 3.89079 3.96653 4.00988 4.16097 4.23045 4.28323 4.35413 4.40751 4.41372 4.46420 4.54819 4.58576 4.62407 4.67603 4.73712 4.81202 4.86070 4.86735 4.90829 4.94451 4.96398 5.02424 5.08669 5.10125 5.13299 5.14712 5.28052 5.32740 5.35401 5.38634 5.40037 5.56601 5.63222 6.07818 6.18206 6.42969 6.49620 7.04586 7.09046 8.73199 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.001682 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.918121 B =16640.687844 C =17399.543903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.119 0.881 4 C 0.093 3.907 5 N -0.622 5.622 6 C 0.550 3.450 7 O -0.572 6.572 8 C -0.118 4.118 9 S -0.152 6.152 10 C -0.546 4.546 11 H 0.083 0.917 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 1.001 2.999 15 H -0.256 1.256 16 H -0.273 1.273 17 H -0.273 1.273 18 C 0.106 3.894 19 C -0.086 4.086 20 H 0.076 0.924 21 C -0.092 4.092 22 C 0.056 3.944 23 N -0.689 5.689 24 C 0.068 3.932 25 C -0.105 4.105 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.138 4.138 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.272 0.728 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.345 0.655 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.785 24.312 21.037 33.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.137 0.863 4 C -0.029 4.029 5 N -0.356 5.356 6 C 0.339 3.661 7 O -0.451 6.451 8 C -0.269 4.269 9 S 0.076 5.924 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.179 1.179 16 H -0.198 1.198 17 H -0.199 1.199 18 C -0.016 4.016 19 C -0.106 4.106 20 H 0.094 0.906 21 C -0.130 4.130 22 C -0.074 4.074 23 N -0.320 5.320 24 C -0.061 4.061 25 C -0.123 4.123 26 C -0.178 4.178 27 C -0.179 4.179 28 C -0.176 4.176 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.163 0.837 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.609 22.805 22.082 32.891 hybrid contribution -0.064 -0.235 -1.853 1.869 sum 8.545 22.570 20.230 31.491 Atomic orbital electron populations 1.21862 0.94421 1.00939 1.02975 1.22166 0.96253 1.00226 0.92302 0.86338 1.22854 1.02147 0.79856 0.98005 1.48942 1.62973 1.05642 1.18084 1.19734 0.77285 0.82389 0.86732 1.90682 1.53894 1.32399 1.68091 1.23282 1.04447 1.03221 0.95978 1.85594 1.83387 1.04327 1.19141 1.23222 1.48716 0.96241 1.01181 0.89905 1.26149 0.95410 0.93919 1.03620 1.70195 1.46452 0.99297 1.38850 0.84879 0.77751 0.79138 0.76012 1.17942 1.19844 1.19867 1.22563 0.98001 0.98735 0.82301 1.22116 0.97975 0.94292 0.96226 0.90601 1.21504 0.99400 0.97964 0.94096 1.21998 0.96862 0.94062 0.94446 1.60505 1.23918 1.39230 1.08348 1.21948 0.97861 0.94720 0.91564 1.22541 0.94264 0.99856 0.95676 1.23024 0.95857 1.02078 0.96872 1.22836 0.97220 1.01497 0.96330 1.22929 0.97041 1.00446 0.97184 0.91075 0.91424 0.95022 0.89979 0.88829 0.87742 0.87624 0.91947 0.90001 0.92619 0.90521 0.89488 0.91678 0.96002 0.83693 0.91637 0.95752 0.88624 0.90760 0.91041 0.89625 0.91401 0.91079 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.90 71.98 0.64 -1.56 16 2 C -0.09 -1.24 3.31 -9.89 -0.03 -1.27 16 3 H 0.12 0.99 7.71 -2.39 -0.02 0.98 16 4 C 0.09 1.76 6.46 86.54 0.56 2.32 16 5 N -0.62 -17.73 3.32 -807.96 -2.68 -20.41 16 6 C 0.55 22.14 7.93 87.66 0.70 22.83 16 7 O -0.57 -28.47 16.13 -3.05 -0.05 -28.52 16 8 C -0.12 -4.97 5.14 71.24 0.37 -4.60 16 9 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 10 C -0.55 -31.63 9.50 67.95 0.65 -30.99 16 11 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 12 C 0.01 0.79 5.49 84.86 0.47 1.25 16 13 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 14 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 15 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 C 0.11 2.43 5.80 86.54 0.50 2.93 16 19 C -0.09 -1.33 2.73 -9.89 -0.03 -1.36 16 20 H 0.08 1.33 7.71 -2.39 -0.02 1.31 16 21 C -0.09 -1.01 4.66 30.59 0.14 -0.86 16 22 C 0.06 0.76 5.54 86.30 0.48 1.24 16 23 N -0.69 -8.71 6.50 -513.88 -3.34 -12.06 16 24 C 0.07 0.88 5.51 86.31 0.48 1.36 16 25 C -0.10 -1.13 3.89 -10.26 -0.04 -1.17 16 26 C -0.14 -1.41 7.65 31.18 0.24 -1.17 16 27 C -0.14 -1.31 8.09 31.18 0.25 -1.06 16 28 C -0.14 -1.39 7.65 31.12 0.24 -1.15 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 1.59 7.02 -2.39 -0.02 1.58 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 4.01 7.95 -2.39 -0.02 4.00 16 35 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.08 1.63 7.78 -2.39 -0.02 1.61 16 38 H 0.06 1.56 7.88 -2.39 -0.02 1.54 16 39 H 0.08 0.71 8.02 -2.39 -0.02 0.69 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.02 0.35 7.54 -2.39 -0.02 0.33 16 43 H 0.35 3.74 8.73 -89.69 -0.78 2.96 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.02 0.35 7.87 -2.39 -0.02 0.33 16 46 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 0.81 7.92 -2.39 -0.02 0.79 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 Total: -1.00 -76.49 425.05 0.77 -75.72 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.09 Total: 18.76 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 5.60 Total: -13.27 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -5.73 Total: -88.72 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.05 Total: -28.52 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -76.49 0.77 -75.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904988.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.148 kcal (2) G-P(sol) polarization free energy of solvation -76.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds