Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.50931 * 2 1 4 4 C 1.53277 * 109.50678 * 239.90183 * 2 1 3 5 5 N 1.47166 * 108.55716 * 187.08357 * 4 2 1 6 6 C 1.34780 * 121.07338 * 231.24809 * 5 4 2 7 7 O 1.21278 * 119.99827 * 185.27802 * 6 5 4 8 8 C 1.50697 * 119.99940 * 5.27619 * 6 5 4 9 9 C 1.52997 * 115.55379 * 280.27120 * 8 6 5 10 10 C 1.53000 * 109.46969 * 293.62764 * 9 8 6 11 11 F 1.39902 * 109.47123 * 185.18511 * 10 9 8 12 12 C 1.53002 * 117.49380 * 134.56197 * 8 6 5 13 13 C 1.53006 * 60.00246 * 252.51289 * 12 8 6 14 14 C 1.47334 * 117.84905 * 51.23070 * 5 4 2 15 15 C 1.52363 * 108.39661 * 310.79599 * 14 5 4 16 16 C 1.54375 * 110.38933 * 286.63098 * 15 14 5 17 17 C 1.54466 * 102.86312 * 207.58136 * 16 15 14 18 18 N 1.47086 * 107.29626 * 21.49971 * 17 16 15 19 19 C 1.36934 * 125.62529 * 180.97440 * 18 17 16 20 20 H 1.08001 * 120.00204 * 175.47262 * 19 18 17 21 21 C 1.38814 * 120.00284 * 355.47715 * 19 18 17 22 22 N 1.31617 * 120.00226 * 159.07033 * 21 19 18 23 23 Si 1.86805 * 119.99643 * 338.79242 * 21 19 18 24 24 H 1.48499 * 109.46888 * 187.59533 * 23 21 19 25 25 H 1.48501 * 109.46966 * 307.59451 * 23 21 19 26 26 H 1.48500 * 109.47132 * 67.59566 * 23 21 19 27 27 C 1.47572 * 108.74515 * 1.24170 * 18 17 16 28 28 O 1.41890 * 111.44047 * 50.10379 * 15 14 5 29 29 H 1.08998 * 109.47483 * 185.05377 * 1 2 3 30 30 H 1.09000 * 109.46688 * 305.05087 * 1 2 3 31 31 H 1.08995 * 109.47363 * 65.05090 * 1 2 3 32 32 H 1.08999 * 109.62386 * 67.36430 * 4 2 1 33 33 H 1.09004 * 109.77742 * 306.89906 * 4 2 1 34 34 H 1.09002 * 109.46877 * 53.62346 * 9 8 6 35 35 H 1.09003 * 109.47139 * 173.62463 * 9 8 6 36 36 H 1.09010 * 109.46874 * 305.18095 * 10 9 8 37 37 H 1.08995 * 109.47297 * 65.17848 * 10 9 8 38 38 H 1.09000 * 117.50499 * 0.02562 * 12 8 6 39 39 H 1.09004 * 117.49612 * 145.02248 * 12 8 6 40 40 H 1.08997 * 117.49667 * 252.51799 * 13 12 8 41 41 H 1.08995 * 117.49641 * 107.49115 * 13 12 8 42 42 H 1.09009 * 109.67454 * 191.07893 * 14 5 4 43 43 H 1.08997 * 109.71530 * 70.54745 * 14 5 4 44 44 H 1.09000 * 110.73195 * 89.23979 * 16 15 14 45 45 H 1.09001 * 110.73167 * 325.92618 * 16 15 14 46 46 H 1.08999 * 109.87907 * 262.07365 * 17 16 15 47 47 H 1.08991 * 109.99897 * 140.99255 * 17 16 15 48 48 H 0.97000 * 120.00232 * 354.69407 * 22 21 19 49 49 H 1.09002 * 110.37658 * 95.26087 * 27 18 17 50 50 H 1.08997 * 110.37561 * 217.60706 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2500 5 7 3.5033 -0.8629 -1.1457 6 6 4.3124 -0.4743 -2.1511 7 8 5.5050 -0.6844 -2.0854 8 6 3.7350 0.2212 -3.3569 9 6 3.0790 -0.6921 -4.3944 10 6 4.1455 -1.5793 -5.0398 11 9 3.5673 -2.3294 -6.0695 12 6 4.4620 1.4659 -3.8698 13 6 3.1211 1.6068 -3.1465 14 6 4.0533 -1.4397 0.0935 15 6 3.4218 -0.7217 1.2797 16 6 4.0033 0.7016 1.4186 17 6 3.8581 0.9865 2.9298 18 7 3.7515 -0.3126 3.6114 19 6 3.5905 -0.4955 4.9589 20 1 3.4491 -1.4899 5.3558 21 6 3.6088 0.5973 5.8148 22 7 3.0619 0.5074 7.0085 23 14 4.4166 2.1928 5.2751 24 1 4.4664 3.1349 6.4219 25 1 5.7967 1.9140 4.8032 26 1 3.6287 2.7979 4.1713 27 6 3.8533 -1.3863 2.6042 28 8 2.0081 -0.6776 1.1666 29 1 -0.3634 -1.0236 0.0905 30 1 -0.3633 0.5902 0.8413 31 1 -0.3634 0.4335 -0.9317 32 1 1.7916 -0.1439 -2.1379 33 1 1.5845 -1.7117 -1.3173 34 1 2.3320 -1.3183 -3.9066 35 1 2.5989 -0.0845 -5.1615 36 1 4.9399 -0.9541 -5.4477 37 1 4.5613 -2.2518 -4.2896 38 1 5.3581 1.7816 -3.3354 39 1 4.4732 1.6343 -4.9467 40 1 2.2501 1.8678 -3.7476 41 1 3.1348 2.0152 -2.1361 42 1 5.1344 -1.3017 0.1142 43 1 3.8180 -2.5029 0.1403 44 1 3.4221 1.4147 0.8339 45 1 5.0518 0.7208 1.1212 46 1 2.9589 1.5751 3.1113 47 1 4.7331 1.5251 3.2933 48 1 2.5791 -0.2949 7.2617 49 1 4.8801 -1.7455 2.5348 50 1 3.1797 -2.2060 2.8540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131673393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -61.767198 kcal Electronic energy + Delta-G solvation = -32184.975320 eV Core-core repulsion = 27935.874329 eV Total energy + Delta-G solvation = -4249.100990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -47.93627 -41.13306 -39.53994 -37.22950 -36.75288 -34.79983 -33.22912 -31.74013 -31.67793 -29.77916 -29.03312 -26.80570 -26.42794 -24.46580 -23.52084 -22.96499 -22.29340 -22.18680 -20.53427 -19.61701 -18.91369 -17.56961 -17.28447 -16.82676 -16.63758 -16.43676 -16.11446 -15.68261 -15.47051 -15.04258 -14.79288 -14.69098 -14.33958 -14.22555 -13.90922 -13.52576 -13.21025 -13.18584 -12.96490 -12.79215 -12.46621 -12.39198 -12.32298 -12.13177 -12.00266 -11.82127 -11.76111 -11.34109 -11.22603 -11.21153 -11.10674 -10.95057 -10.86605 -10.62120 -10.38561 -10.05166 -9.86538 -9.82190 -9.45002 -9.02905 -8.60736 -8.57301 -7.04899 -6.29782 -3.15966 2.28809 2.55819 3.12532 3.42778 3.52083 3.63843 3.72583 3.89720 4.05430 4.24374 4.28459 4.47935 4.54731 4.62486 4.65207 4.66720 4.74749 4.80662 4.87549 4.94525 4.97493 5.06570 5.17000 5.22647 5.29500 5.30137 5.33063 5.40191 5.42067 5.47194 5.50659 5.57876 5.59590 5.66372 5.67454 5.75347 5.81075 5.98164 6.05866 6.11364 6.18976 6.27225 6.42403 6.49412 6.76133 7.11343 7.45623 7.65124 7.88456 8.35161 9.05991 9.58228 10.23936 11.20640 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.003214 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.433174 B = 8711.124261 C = 8907.332473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.064 0.936 4 C 0.076 3.924 5 N -0.605 5.605 6 C 0.552 3.448 7 O -0.532 6.532 8 C -0.160 4.160 9 C -0.107 4.107 10 C 0.062 3.938 11 F -0.219 7.219 12 C -0.141 4.141 13 C -0.158 4.158 14 C 0.097 3.903 15 C 0.094 3.906 16 C -0.151 4.151 17 C 0.120 3.880 18 N -0.606 5.606 19 C -0.321 4.321 20 H 0.080 0.920 21 C -0.020 4.020 22 N -0.924 5.924 23 Si 1.061 2.939 24 H -0.301 1.301 25 H -0.298 1.298 26 H -0.287 1.287 27 C 0.154 3.846 28 O -0.342 6.342 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.028 0.972 48 H 0.262 0.738 49 H 0.042 0.958 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 0.176 -26.396 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 H 0.082 0.918 4 C -0.047 4.047 5 N -0.338 5.338 6 C 0.339 3.661 7 O -0.408 6.408 8 C -0.164 4.164 9 C -0.145 4.145 10 C 0.008 3.992 11 F -0.200 7.200 12 C -0.178 4.178 13 C -0.195 4.195 14 C -0.026 4.026 15 C 0.052 3.948 16 C -0.189 4.189 17 C -0.005 4.005 18 N -0.333 5.333 19 C -0.448 4.448 20 H 0.098 0.902 21 C -0.219 4.219 22 N -0.565 5.565 23 Si 0.895 3.105 24 H -0.229 1.229 25 H -0.227 1.227 26 H -0.215 1.215 27 C 0.028 3.972 28 O -0.260 6.260 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.238 1.444 -25.610 25.748 hybrid contribution -0.269 -1.481 -0.724 1.671 sum -2.507 -0.037 -26.334 26.453 Atomic orbital electron populations 1.21700 0.92218 1.03457 1.02609 1.22481 0.95566 0.95865 0.85147 0.91786 1.22608 0.79849 1.02191 1.00021 1.48139 1.06951 1.62119 1.16618 1.19468 0.85984 0.78090 0.82528 1.90715 1.15163 1.55634 1.79323 1.21253 1.07051 0.90737 0.97319 1.21656 0.97933 0.97813 0.97070 1.21942 0.95591 0.93881 0.87830 1.92767 1.86753 1.78737 1.61748 1.23061 0.96542 0.96932 1.01283 1.23200 0.97859 0.95439 1.03014 1.22168 1.00530 0.97731 0.82131 1.22426 0.81372 0.95673 0.95292 1.23081 1.00979 0.96763 0.98100 1.21882 0.98693 0.90093 0.89798 1.44769 1.86546 0.98937 1.03074 1.20124 1.48616 0.96050 0.79991 0.90194 1.25699 1.00319 1.01346 0.94567 1.70891 1.34388 1.29614 1.21614 0.83990 0.76231 0.76684 0.73606 1.22909 1.22688 1.21450 1.21391 0.97908 0.92554 0.85393 1.87957 1.19747 1.76547 1.41787 0.91488 0.91087 0.91125 0.88597 0.90390 0.89915 0.89369 0.90216 0.90627 0.87691 0.87579 0.87394 0.87955 0.87898 0.90469 0.91229 0.90747 0.93523 0.95494 0.92796 0.94088 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 37.16 0.36 -1.01 16 2 C 0.07 0.80 3.19 -26.59 -0.08 0.72 16 3 H 0.06 0.77 6.23 -51.93 -0.32 0.45 16 4 C 0.08 0.73 5.22 -3.53 -0.02 0.71 16 5 N -0.61 -7.13 2.95 -172.69 -0.51 -7.64 16 6 C 0.55 6.59 6.41 -10.99 -0.07 6.52 16 7 O -0.53 -8.21 16.51 5.56 0.09 -8.12 16 8 C -0.16 -1.31 0.71 -155.66 -0.11 -1.42 16 9 C -0.11 -0.73 5.28 -26.73 -0.14 -0.87 16 10 C 0.06 0.51 7.37 37.16 0.27 0.79 16 11 F -0.22 -2.19 17.36 2.25 0.04 -2.15 16 12 C -0.14 -1.02 9.87 -26.73 -0.26 -1.28 16 13 C -0.16 -1.03 8.53 -26.72 -0.23 -1.26 16 14 C 0.10 1.34 5.28 -3.91 -0.02 1.32 16 15 C 0.09 1.55 0.84 -89.52 -0.08 1.48 16 16 C -0.15 -2.62 5.86 -25.24 -0.15 -2.77 16 17 C 0.12 2.69 4.62 -2.95 -0.01 2.67 16 18 N -0.61 -15.08 3.36 -170.17 -0.57 -15.65 16 19 C -0.32 -9.31 10.52 -15.06 -0.16 -9.47 16 20 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 21 C -0.02 -0.59 5.48 -17.43 -0.10 -0.69 16 22 N -0.92 -29.35 13.70 55.49 0.76 -28.59 16 23 Si 1.06 27.18 24.55 -169.99 -4.17 23.01 16 24 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.30 -7.41 6.90 56.52 0.39 -7.02 16 26 H -0.29 -6.75 5.38 56.52 0.30 -6.45 16 27 C 0.15 3.10 6.43 -2.75 -0.02 3.08 16 28 O -0.34 -5.64 9.94 -35.22 -0.35 -5.99 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.68 4.82 -51.93 -0.25 0.43 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.55 7.24 -51.93 -0.38 0.17 16 35 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.08 0.70 7.90 -51.93 -0.41 0.29 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.52 6.91 -51.92 -0.36 1.16 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.08 6.07 -51.93 -0.32 0.76 16 45 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 46 H 0.05 1.12 6.60 -51.93 -0.34 0.77 16 47 H 0.03 0.64 4.20 -51.93 -0.22 0.42 16 48 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 49 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -34.81 383.19 -7.93 -42.74 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -8.17 Total: -1.90 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.82 Total: -1.48 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.32 Total: -51.88 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.26 Total: -14.11 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -4.17 Total: 23.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.81 -7.93 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.031 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds