Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.50931 * 2 1 4 4 C 1.53277 * 109.50678 * 239.90183 * 2 1 3 5 5 N 1.47166 * 108.55716 * 187.08357 * 4 2 1 6 6 C 1.34780 * 121.07338 * 231.24809 * 5 4 2 7 7 O 1.21278 * 119.99827 * 185.27802 * 6 5 4 8 8 C 1.50697 * 119.99940 * 5.27619 * 6 5 4 9 9 C 1.52997 * 115.55379 * 280.27120 * 8 6 5 10 10 C 1.53000 * 109.46969 * 293.62764 * 9 8 6 11 11 F 1.39902 * 109.47123 * 185.18511 * 10 9 8 12 12 C 1.53002 * 117.49380 * 134.56197 * 8 6 5 13 13 C 1.53006 * 60.00246 * 252.51289 * 12 8 6 14 14 C 1.47334 * 117.84905 * 51.23070 * 5 4 2 15 15 C 1.52363 * 108.39661 * 310.79599 * 14 5 4 16 16 C 1.54375 * 110.38933 * 286.63098 * 15 14 5 17 17 C 1.54466 * 102.86312 * 207.58136 * 16 15 14 18 18 N 1.47086 * 107.29626 * 21.49971 * 17 16 15 19 19 C 1.36934 * 125.62529 * 180.97440 * 18 17 16 20 20 H 1.08001 * 120.00204 * 175.47262 * 19 18 17 21 21 C 1.38814 * 120.00284 * 355.47715 * 19 18 17 22 22 N 1.31617 * 120.00226 * 159.07033 * 21 19 18 23 23 Si 1.86805 * 119.99643 * 338.79242 * 21 19 18 24 24 H 1.48499 * 109.46888 * 187.59533 * 23 21 19 25 25 H 1.48501 * 109.46966 * 307.59451 * 23 21 19 26 26 H 1.48500 * 109.47132 * 67.59566 * 23 21 19 27 27 C 1.47572 * 108.74515 * 1.24170 * 18 17 16 28 28 O 1.41890 * 111.44047 * 50.10379 * 15 14 5 29 29 H 1.08998 * 109.47483 * 185.05377 * 1 2 3 30 30 H 1.09000 * 109.46688 * 305.05087 * 1 2 3 31 31 H 1.08995 * 109.47363 * 65.05090 * 1 2 3 32 32 H 1.08999 * 109.62386 * 67.36430 * 4 2 1 33 33 H 1.09004 * 109.77742 * 306.89906 * 4 2 1 34 34 H 1.09002 * 109.46877 * 53.62346 * 9 8 6 35 35 H 1.09003 * 109.47139 * 173.62463 * 9 8 6 36 36 H 1.09010 * 109.46874 * 305.18095 * 10 9 8 37 37 H 1.08995 * 109.47297 * 65.17848 * 10 9 8 38 38 H 1.09000 * 117.50499 * 0.02562 * 12 8 6 39 39 H 1.09004 * 117.49612 * 145.02248 * 12 8 6 40 40 H 1.08997 * 117.49667 * 252.51799 * 13 12 8 41 41 H 1.08995 * 117.49641 * 107.49115 * 13 12 8 42 42 H 1.09009 * 109.67454 * 191.07893 * 14 5 4 43 43 H 1.08997 * 109.71530 * 70.54745 * 14 5 4 44 44 H 1.09000 * 110.73195 * 89.23979 * 16 15 14 45 45 H 1.09001 * 110.73167 * 325.92618 * 16 15 14 46 46 H 1.08999 * 109.87907 * 262.07365 * 17 16 15 47 47 H 1.08991 * 109.99897 * 140.99255 * 17 16 15 48 48 H 0.97000 * 120.00232 * 354.69407 * 22 21 19 49 49 H 1.09002 * 110.37658 * 95.26087 * 27 18 17 50 50 H 1.08997 * 110.37561 * 217.60706 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2500 5 7 3.5033 -0.8629 -1.1457 6 6 4.3124 -0.4743 -2.1511 7 8 5.5050 -0.6844 -2.0854 8 6 3.7350 0.2212 -3.3569 9 6 3.0790 -0.6921 -4.3944 10 6 4.1455 -1.5793 -5.0398 11 9 3.5673 -2.3294 -6.0695 12 6 4.4620 1.4659 -3.8698 13 6 3.1211 1.6068 -3.1465 14 6 4.0533 -1.4397 0.0935 15 6 3.4218 -0.7217 1.2797 16 6 4.0033 0.7016 1.4186 17 6 3.8581 0.9865 2.9298 18 7 3.7515 -0.3126 3.6114 19 6 3.5905 -0.4955 4.9589 20 1 3.4491 -1.4899 5.3558 21 6 3.6088 0.5973 5.8148 22 7 3.0619 0.5074 7.0085 23 14 4.4166 2.1928 5.2751 24 1 4.4664 3.1349 6.4219 25 1 5.7967 1.9140 4.8032 26 1 3.6287 2.7979 4.1713 27 6 3.8533 -1.3863 2.6042 28 8 2.0081 -0.6776 1.1666 29 1 -0.3634 -1.0236 0.0905 30 1 -0.3633 0.5902 0.8413 31 1 -0.3634 0.4335 -0.9317 32 1 1.7916 -0.1439 -2.1379 33 1 1.5845 -1.7117 -1.3173 34 1 2.3320 -1.3183 -3.9066 35 1 2.5989 -0.0845 -5.1615 36 1 4.9399 -0.9541 -5.4477 37 1 4.5613 -2.2518 -4.2896 38 1 5.3581 1.7816 -3.3354 39 1 4.4732 1.6343 -4.9467 40 1 2.2501 1.8678 -3.7476 41 1 3.1348 2.0152 -2.1361 42 1 5.1344 -1.3017 0.1142 43 1 3.8180 -2.5029 0.1403 44 1 3.4221 1.4147 0.8339 45 1 5.0518 0.7208 1.1212 46 1 2.9589 1.5751 3.1113 47 1 4.7331 1.5251 3.2933 48 1 2.5791 -0.2949 7.2617 49 1 4.8801 -1.7455 2.5348 50 1 3.1797 -2.2060 2.8540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131673393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -85.482186 kcal Electronic energy + Delta-G solvation = -32186.003679 eV Core-core repulsion = 27935.874329 eV Total energy + Delta-G solvation = -4250.129349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.62204 -42.12368 -40.61787 -38.24195 -37.97039 -35.84944 -34.93987 -33.34865 -32.20925 -31.33356 -30.47952 -28.07097 -27.37450 -25.62070 -24.82662 -23.54980 -23.44103 -23.04301 -22.24995 -20.80998 -19.80317 -19.57100 -18.08340 -18.02204 -17.47073 -17.35038 -17.09043 -16.86275 -16.38591 -16.04616 -15.85016 -15.81529 -15.64824 -15.42175 -15.16999 -14.99059 -14.70337 -14.15941 -13.92417 -13.75586 -13.63229 -13.50154 -13.24406 -13.20193 -13.09027 -13.03717 -12.86414 -12.55050 -12.42377 -12.38965 -12.18235 -11.90752 -11.81896 -11.65975 -11.57986 -11.52768 -11.15792 -11.06410 -10.93152 -10.72258 -10.68565 -9.62703 -9.16254 -8.67961 -5.45433 1.36456 1.41733 1.46430 1.67900 1.68927 2.51927 2.52204 2.57413 2.99577 3.19266 3.28089 3.42472 3.43169 3.63139 3.69532 3.71846 3.73496 3.80403 3.96682 3.99375 4.09677 4.13039 4.15764 4.19092 4.29660 4.39503 4.47792 4.54141 4.55470 4.56254 4.66274 4.69340 4.74221 4.74633 4.83577 4.85031 4.89348 4.97866 4.98892 5.01082 5.06353 5.08364 5.19780 5.22573 5.32910 5.48911 6.06118 6.23777 6.32024 6.78576 6.98961 7.40654 8.05373 8.84397 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.003214 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.433174 B = 8711.124261 C = 8907.332473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.060 3.940 3 H 0.065 0.935 4 C 0.082 3.918 5 N -0.605 5.605 6 C 0.549 3.451 7 O -0.574 6.574 8 C -0.167 4.167 9 C -0.099 4.099 10 C 0.059 3.941 11 F -0.229 7.229 12 C -0.144 4.144 13 C -0.141 4.141 14 C 0.105 3.895 15 C 0.111 3.889 16 C -0.139 4.139 17 C 0.113 3.887 18 N -0.627 5.627 19 C -0.312 4.312 20 H 0.049 0.951 21 C -0.077 4.077 22 N -0.959 5.959 23 Si 1.101 2.899 24 H -0.309 1.309 25 H -0.286 1.286 26 H -0.254 1.254 27 C 0.146 3.854 28 O -0.372 6.372 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.031 0.969 47 H 0.024 0.976 48 H 0.249 0.751 49 H 0.053 0.947 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 1.781 -30.692 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.002 3.998 3 H 0.083 0.917 4 C -0.040 4.040 5 N -0.337 5.337 6 C 0.338 3.662 7 O -0.453 6.453 8 C -0.171 4.171 9 C -0.136 4.136 10 C 0.004 3.996 11 F -0.211 7.211 12 C -0.181 4.181 13 C -0.177 4.177 14 C -0.019 4.019 15 C 0.069 3.931 16 C -0.176 4.176 17 C -0.011 4.011 18 N -0.354 5.354 19 C -0.440 4.440 20 H 0.067 0.933 21 C -0.270 4.270 22 N -0.603 5.603 23 Si 0.929 3.071 24 H -0.238 1.238 25 H -0.214 1.214 26 H -0.179 1.179 27 C 0.020 3.980 28 O -0.292 6.292 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.049 0.951 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.227 3.029 -29.969 30.294 hybrid contribution 0.010 -2.107 0.608 2.193 sum -3.216 0.923 -29.361 29.551 Atomic orbital electron populations 1.21742 0.90514 1.03380 1.03943 1.22823 0.96881 0.95690 0.84399 0.91694 1.22738 0.78169 1.03095 1.00033 1.48205 1.08021 1.61775 1.15731 1.20164 0.85456 0.77317 0.83235 1.90697 1.17131 1.57169 1.80279 1.21177 1.08458 0.91326 0.96105 1.21643 0.97234 0.97614 0.97131 1.22016 0.96517 0.93770 0.87249 1.92746 1.86939 1.79162 1.62232 1.23146 0.96365 0.95999 1.02582 1.23347 0.98489 0.92892 1.03011 1.21876 0.99732 0.97912 0.82357 1.22060 0.82093 0.94769 0.94176 1.23026 1.02153 0.97855 0.94610 1.21959 0.97545 0.88682 0.92919 1.44838 1.86625 1.01566 1.02394 1.20033 1.46773 0.94687 0.82520 0.93255 1.26954 1.00857 1.04788 0.94384 1.70990 1.36693 1.29402 1.23197 0.83495 0.76280 0.73267 0.74036 1.23765 1.21416 1.17929 1.21578 0.98390 0.91526 0.86507 1.87921 1.19254 1.77440 1.44575 0.91717 0.92963 0.87127 0.85258 0.89465 0.89376 0.86687 0.89446 0.92417 0.89727 0.85264 0.84165 0.88807 0.88887 0.89773 0.88819 0.89812 0.95066 0.95902 0.94256 0.92969 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.57 71.98 0.69 -1.52 16 2 C 0.06 1.22 3.19 30.69 0.10 1.32 16 3 H 0.07 1.32 6.23 -2.39 -0.01 1.31 16 4 C 0.08 1.24 5.22 86.35 0.45 1.69 16 5 N -0.61 -12.64 2.95 -818.66 -2.41 -15.05 16 6 C 0.55 11.79 6.41 87.66 0.56 12.35 16 7 O -0.57 -17.10 16.51 -3.02 -0.05 -17.15 16 8 C -0.17 -2.11 0.71 -52.93 -0.04 -2.14 16 9 C -0.10 -0.93 5.28 30.59 0.16 -0.76 16 10 C 0.06 0.83 7.37 71.98 0.53 1.36 16 11 F -0.23 -4.08 17.36 44.97 0.78 -3.30 16 12 C -0.14 -1.55 9.87 30.60 0.30 -1.25 16 13 C -0.14 -1.13 8.53 30.60 0.26 -0.87 16 14 C 0.10 2.75 5.28 86.01 0.45 3.21 16 15 C 0.11 3.52 0.84 -10.08 -0.01 3.52 16 16 C -0.14 -4.53 5.86 31.56 0.19 -4.34 16 17 C 0.11 4.95 4.62 86.77 0.40 5.35 16 18 N -0.63 -31.57 3.36 -692.30 -2.32 -33.90 16 19 C -0.31 -18.74 10.52 84.03 0.88 -17.86 16 20 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 21 C -0.08 -4.71 5.48 84.86 0.47 -4.25 16 22 N -0.96 -63.25 13.70 21.65 0.30 -62.96 16 23 Si 1.10 55.38 24.55 68.60 1.68 57.06 16 24 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 25 H -0.29 -13.71 6.90 99.48 0.69 -13.02 16 26 H -0.25 -11.34 5.38 99.48 0.54 -10.80 16 27 C 0.15 5.90 6.43 86.63 0.56 6.46 16 28 O -0.37 -11.76 9.94 -148.95 -1.48 -13.24 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.13 1.11 4.82 -2.39 -0.01 1.09 16 33 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 0.76 7.24 -2.39 -0.02 0.74 16 35 H 0.11 0.54 8.08 -2.39 -0.02 0.52 16 36 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.01 7.90 -2.39 -0.02 0.99 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 2.66 6.91 -2.38 -0.02 2.65 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.09 2.61 6.07 -2.39 -0.01 2.60 16 45 H 0.08 2.60 7.83 -2.39 -0.02 2.59 16 46 H 0.03 1.46 6.60 -2.39 -0.02 1.44 16 47 H 0.02 1.05 4.20 -2.39 -0.01 1.04 16 48 H 0.25 16.45 8.73 -92.71 -0.81 15.64 16 49 H 0.05 2.00 8.00 -2.39 -0.02 1.98 16 50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -80.19 383.19 3.16 -77.03 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.71 Total: 9.26 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.96 Total: 2.25 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.44 Total: -111.91 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.53 Total: -30.39 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 55.38 SS G_CDS: 1.68 Total: 57.06 kcal Total: -80.19 3.16 -77.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.448 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds