Wall clock time and date at job start Sat Apr 11 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.51312 * 2 1 4 4 C 1.53281 * 109.51567 * 120.10142 * 2 1 3 5 5 N 1.47175 * 108.54977 * 173.01427 * 4 2 1 6 6 C 1.34771 * 121.07358 * 128.76339 * 5 4 2 7 7 O 1.21288 * 119.99699 * 175.05669 * 6 5 4 8 8 C 1.50697 * 120.00725 * 355.05411 * 6 5 4 9 9 C 1.52998 * 115.54942 * 280.49936 * 8 6 5 10 10 C 1.53003 * 109.47333 * 294.64238 * 9 8 6 11 11 F 1.39895 * 109.47508 * 185.14989 * 10 9 8 12 12 C 1.52992 * 117.49900 * 134.78895 * 8 6 5 13 13 C 1.52997 * 117.49741 * 66.16538 * 8 6 5 14 14 C 1.47324 * 117.84232 * 308.73535 * 5 4 2 15 15 C 1.52365 * 108.43521 * 49.15308 * 14 5 4 16 16 C 1.54375 * 110.39281 * 73.53105 * 15 14 5 17 17 C 1.54477 * 102.94950 * 152.19946 * 16 15 14 18 18 N 1.47084 * 107.28813 * 338.84010 * 17 16 15 19 19 C 1.36938 * 125.62521 * 178.90943 * 18 17 16 20 20 H 1.07998 * 119.99927 * 184.94545 * 19 18 17 21 21 C 1.38814 * 120.00457 * 4.95157 * 19 18 17 22 22 N 1.31620 * 119.99576 * 354.52951 * 21 19 18 23 23 Si 1.86797 * 120.00083 * 174.52612 * 21 19 18 24 24 H 1.48503 * 109.47211 * 274.99987 * 23 21 19 25 25 H 1.48495 * 109.47345 * 35.00242 * 23 21 19 26 26 H 1.48499 * 109.46728 * 155.00143 * 23 21 19 27 27 C 1.47573 * 108.74343 * 358.64930 * 18 17 16 28 28 O 1.41882 * 111.46951 * 310.02693 * 15 14 5 29 29 H 1.09008 * 109.47369 * 299.89525 * 1 2 3 30 30 H 1.08999 * 109.47717 * 59.89514 * 1 2 3 31 31 H 1.09000 * 109.47037 * 179.89858 * 1 2 3 32 32 H 1.09000 * 109.62310 * 53.29474 * 4 2 1 33 33 H 1.09000 * 109.77869 * 292.82370 * 4 2 1 34 34 H 1.09002 * 109.47491 * 54.64351 * 9 8 6 35 35 H 1.09004 * 109.47398 * 174.64136 * 9 8 6 36 36 H 1.09000 * 109.46805 * 305.15682 * 10 9 8 37 37 H 1.09003 * 109.46804 * 65.14847 * 10 9 8 38 38 H 1.08999 * 117.50347 * 0.02562 * 12 8 6 39 39 H 1.09003 * 117.50024 * 145.01985 * 12 8 6 40 40 H 1.08998 * 117.49923 * 214.98380 * 13 8 6 41 41 H 1.08997 * 117.49999 * 0.02562 * 13 8 6 42 42 H 1.08999 * 109.64624 * 289.47220 * 14 5 4 43 43 H 1.09000 * 109.64221 * 168.83789 * 14 5 4 44 44 H 1.08997 * 110.73219 * 270.74380 * 16 15 14 45 45 H 1.08996 * 110.73316 * 33.87186 * 16 15 14 46 46 H 1.09000 * 109.98922 * 219.35538 * 17 16 15 47 47 H 1.09002 * 109.77260 * 98.20172 * 17 16 15 48 48 H 0.97001 * 120.00316 * 180.02562 * 22 21 19 49 49 H 1.08993 * 110.38111 * 142.37384 * 27 18 17 50 50 H 1.08998 * 110.37468 * 264.72447 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 1.2499 5 7 3.5037 -0.8607 1.1463 6 6 4.3116 -0.4717 2.1525 7 8 5.5055 -0.6745 2.0846 8 6 3.7317 0.2152 3.3620 9 6 3.4182 1.7027 3.1889 10 6 4.7201 2.4765 2.9716 11 9 4.4464 3.8478 2.9306 12 6 4.2133 -0.2504 4.7375 13 6 2.8026 -0.6026 4.2612 14 6 4.0551 -1.4365 -0.0926 15 6 3.4225 -0.7208 -1.2797 16 6 4.0038 0.7023 -1.4219 17 6 3.8635 0.9840 -2.9342 18 7 3.7511 -0.3163 -3.6125 19 6 3.5897 -0.5019 -4.9596 20 1 3.4372 -1.4960 -5.3532 21 6 3.6223 0.5875 -5.8193 22 7 3.7002 1.8078 -5.3324 23 14 3.5557 0.3215 -7.6670 24 1 4.9246 0.0575 -8.1788 25 1 2.6818 -0.8405 -7.9687 26 1 3.0080 1.5362 -8.3225 27 6 3.8474 -1.3879 -2.6024 28 8 2.0089 -0.6769 -1.1665 29 1 -0.3634 0.5122 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0277 -0.0018 32 1 1.5858 -1.7126 1.3129 33 1 1.7902 -0.1477 2.1398 34 1 2.7663 1.8387 2.3260 35 1 2.9191 2.0753 4.0835 36 1 5.4080 2.2675 3.7909 37 1 5.1730 2.1681 2.0293 38 1 4.9498 -1.0533 4.7677 39 1 4.3070 0.5031 5.5195 40 1 1.9682 -0.0809 4.7299 41 1 2.6111 -1.6377 3.9783 42 1 3.8205 -2.4999 -0.1385 43 1 5.1357 -1.2953 -0.1130 44 1 3.4228 1.4164 -0.8384 45 1 5.0515 0.7229 -1.1221 46 1 4.7425 1.5166 -3.2972 47 1 2.9669 1.5762 -3.1174 48 1 3.7225 2.5692 -5.9330 49 1 3.1698 -2.2049 -2.8501 50 1 4.8723 -1.7518 -2.5318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131673395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:50 Heat of formation + Delta-G solvation = -70.589545 kcal Electronic energy + Delta-G solvation = -32315.694335 eV Core-core repulsion = 28066.210779 eV Total energy + Delta-G solvation = -4249.483556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -47.73269 -40.98098 -39.34346 -37.12057 -36.38134 -34.64212 -33.08111 -31.55086 -31.34602 -29.42086 -28.62050 -26.56283 -26.12658 -24.50735 -23.69767 -22.94790 -22.12078 -21.85447 -20.21102 -19.34875 -18.73194 -17.16945 -17.03521 -16.68528 -16.40182 -16.36239 -15.87469 -15.31593 -15.13490 -14.78071 -14.70043 -14.42761 -14.23230 -14.14443 -13.50123 -13.43691 -13.05505 -13.02715 -12.64189 -12.57424 -12.30559 -12.18820 -11.98791 -11.97095 -11.88812 -11.66720 -11.60632 -11.06925 -11.01416 -10.91493 -10.86202 -10.83388 -10.50297 -10.32477 -10.24616 -10.10268 -10.05184 -9.76340 -9.62232 -9.54548 -8.54689 -8.42599 -6.79840 -5.67990 -3.00715 2.39390 2.69329 3.19875 3.43421 3.47950 3.49792 3.83133 3.99748 4.15396 4.33058 4.41088 4.51269 4.64877 4.69270 4.77222 4.87197 4.94586 5.00480 5.03597 5.12145 5.16212 5.19856 5.32419 5.39558 5.45058 5.47147 5.48993 5.57123 5.57660 5.59034 5.69841 5.74985 5.78003 5.78509 5.88423 5.98166 6.10909 6.16331 6.30323 6.46209 6.48801 6.54212 6.63559 7.24483 7.57646 7.64528 7.66258 7.85550 8.00316 8.28116 9.24715 9.84838 10.50731 11.44153 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.003343 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.671749 B = 8373.334887 C = 8807.890360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.065 0.935 4 C 0.077 3.923 5 N -0.604 5.604 6 C 0.552 3.448 7 O -0.533 6.533 8 C -0.157 4.157 9 C -0.107 4.107 10 C 0.063 3.937 11 F -0.217 7.217 12 C -0.142 4.142 13 C -0.159 4.159 14 C 0.097 3.903 15 C 0.093 3.907 16 C -0.165 4.165 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.153 3.847 28 O -0.343 6.343 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.252 0.748 49 H 0.051 0.949 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -3.373 22.388 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 H 0.082 0.918 4 C -0.046 4.046 5 N -0.336 5.336 6 C 0.339 3.661 7 O -0.410 6.410 8 C -0.161 4.161 9 C -0.145 4.145 10 C 0.008 3.992 11 F -0.198 7.198 12 C -0.180 4.180 13 C -0.196 4.196 14 C -0.025 4.025 15 C 0.052 3.948 16 C -0.204 4.204 17 C 0.061 3.939 18 N -0.325 5.325 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.208 1.208 26 H -0.218 1.218 27 C 0.026 3.974 28 O -0.262 6.262 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.024 -3.397 21.996 22.617 hybrid contribution 0.023 0.138 -0.826 0.838 sum -4.001 -3.259 21.170 21.790 Atomic orbital electron populations 1.21690 0.92429 1.02999 1.02773 1.22452 0.95376 0.96041 0.85215 0.91761 1.22604 0.79886 1.02077 1.00007 1.48128 1.06910 1.62004 1.16603 1.19446 0.86059 0.77929 0.82698 1.90712 1.15053 1.55766 1.79452 1.21262 1.07460 0.95569 0.91769 1.21650 0.98178 0.90337 1.04318 1.21928 0.97527 0.75551 1.04232 1.92771 1.95335 1.33555 1.98173 1.23051 0.97388 1.03487 0.94043 1.23184 0.94387 1.00662 1.01415 1.22196 1.00505 0.97492 0.82344 1.22403 0.81077 0.96453 0.94881 1.23363 0.99858 0.95720 1.01441 1.21100 1.00772 0.87847 0.84152 1.44410 1.85838 0.99995 1.02262 1.19030 1.42465 0.93605 0.80341 0.90398 1.24799 1.02210 0.95276 0.98058 1.69971 1.56863 0.97078 1.32925 0.86140 0.77637 0.76841 0.85165 1.21571 1.20756 1.21762 1.21323 0.97501 0.92588 0.85956 1.87923 1.20092 1.76511 1.41627 0.91289 0.91001 0.91739 0.90558 0.88741 0.89846 0.89435 0.90358 0.90486 0.87809 0.87632 0.87470 0.88053 0.90842 0.88050 0.92092 0.91802 0.93673 0.93817 0.93792 0.93113 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.57 37.15 0.36 -1.14 16 2 C 0.07 0.89 3.20 -26.59 -0.08 0.81 16 3 H 0.06 0.91 6.23 -51.93 -0.32 0.58 16 4 C 0.08 0.81 5.45 -3.53 -0.02 0.79 16 5 N -0.60 -7.77 2.95 -172.69 -0.51 -8.28 16 6 C 0.55 7.16 6.38 -10.99 -0.07 7.09 16 7 O -0.53 -8.78 16.51 5.55 0.09 -8.69 16 8 C -0.16 -1.43 0.75 -155.67 -0.12 -1.55 16 9 C -0.11 -0.93 5.33 -26.73 -0.14 -1.07 16 10 C 0.06 0.66 7.36 37.16 0.27 0.93 16 11 F -0.22 -2.73 17.36 2.25 0.04 -2.69 16 12 C -0.14 -1.07 9.87 -26.74 -0.26 -1.33 16 13 C -0.16 -1.03 8.29 -26.73 -0.22 -1.26 16 14 C 0.10 1.46 5.28 -3.92 -0.02 1.44 16 15 C 0.09 1.66 0.84 -89.64 -0.08 1.59 16 16 C -0.17 -3.22 5.87 -25.24 -0.15 -3.37 16 17 C 0.19 4.64 5.39 -2.95 -0.02 4.63 16 18 N -0.60 -15.56 3.40 -170.31 -0.58 -16.14 16 19 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 22 N -0.92 -27.48 10.34 55.49 0.57 -26.91 16 23 Si 0.91 22.40 29.56 -169.99 -5.02 17.37 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 C 0.15 3.21 6.42 -2.87 -0.02 3.19 16 28 O -0.34 -6.07 9.93 -35.22 -0.35 -6.42 16 29 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.76 4.81 -51.93 -0.25 0.51 16 34 H 0.08 0.76 7.63 -51.93 -0.40 0.37 16 35 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.10 1.64 6.90 -51.93 -0.36 1.28 16 44 H 0.06 1.11 6.08 -51.93 -0.32 0.80 16 45 H 0.06 1.22 7.82 -51.93 -0.41 0.81 16 46 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 47 H 0.04 1.22 7.52 -51.93 -0.39 0.83 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.04 0.73 7.99 -51.93 -0.42 0.31 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -33.49 391.15 -8.95 -42.44 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.26 Total: -0.48 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.82 Total: 3.89 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.51 Total: -51.32 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.26 Total: -15.11 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.49 -8.95 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.150 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds