Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.45654 * 2 1 4 4 C 1.53039 * 109.45889 * 240.02714 * 2 1 3 5 5 C 1.53196 * 109.33748 * 178.60961 * 4 2 1 6 6 N 1.46995 * 108.73708 * 54.62190 * 5 4 2 7 7 C 1.34779 * 120.60954 * 126.39083 * 6 5 4 8 8 O 1.21283 * 119.99350 * 180.02562 * 7 6 5 9 9 C 1.50691 * 120.00268 * 0.02562 * 7 6 5 10 10 S 1.81005 * 109.47111 * 180.02562 * 9 7 6 11 11 C 1.76196 * 100.00250 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00073 * 359.97438 * 11 10 9 13 13 C 1.38794 * 120.00267 * 180.02562 * 11 10 9 14 14 N 1.31629 * 119.99787 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00113 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47359 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47381 * 119.99928 * 15 13 11 18 18 H 1.48503 * 109.47180 * 239.99845 * 15 13 11 19 19 C 1.46925 * 118.75597 * 306.40484 * 6 5 4 20 20 C 1.53042 * 109.45090 * 119.96047 * 2 1 3 21 21 H 1.08998 * 109.49487 * 61.40001 * 20 2 1 22 22 C 1.52996 * 109.50066 * 301.33253 * 20 2 1 23 23 N 1.46903 * 109.46971 * 174.99852 * 22 20 2 24 24 C 1.46898 * 110.99585 * 179.97438 * 23 22 20 25 25 C 1.53001 * 109.47013 * 179.97438 * 24 23 22 26 26 C 1.53781 * 113.61485 * 272.50087 * 25 24 23 27 27 C 1.53783 * 87.07830 * 220.01961 * 26 25 24 28 28 C 1.53777 * 87.08638 * 25.42929 * 27 26 25 29 29 H 1.09008 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47193 * 299.97039 * 1 2 3 31 31 H 1.08998 * 109.47428 * 59.97598 * 1 2 3 32 32 H 1.09002 * 109.49756 * 298.57684 * 4 2 1 33 33 H 1.09000 * 109.49883 * 58.64427 * 4 2 1 34 34 H 1.09001 * 109.58261 * 174.43824 * 5 4 2 35 35 H 1.08996 * 109.58319 * 294.86146 * 5 4 2 36 36 H 1.09001 * 109.47360 * 300.00020 * 9 7 6 37 37 H 1.08998 * 109.47712 * 60.00365 * 9 7 6 38 38 H 0.96997 * 119.99896 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.58683 * 293.82929 * 19 6 5 40 40 H 1.08993 * 109.58510 * 173.40005 * 19 6 5 41 41 H 1.09000 * 109.46674 * 295.00137 * 22 20 2 42 42 H 1.09005 * 109.46974 * 54.99642 * 22 20 2 43 43 H 1.00900 * 110.99656 * 56.04823 * 23 22 20 44 44 H 1.09003 * 109.47071 * 300.00134 * 24 23 22 45 45 H 1.09005 * 109.47391 * 59.99887 * 24 23 22 46 46 H 1.09004 * 112.84834 * 43.80302 * 25 24 23 47 47 H 1.09001 * 113.61466 * 334.56111 * 26 25 24 48 48 H 1.08997 * 113.61536 * 105.46730 * 26 25 24 49 49 H 1.09009 * 113.61048 * 270.88274 * 27 26 25 50 50 H 1.09001 * 113.61821 * 139.98400 * 27 26 25 51 51 H 1.08997 * 113.61603 * 220.02650 * 28 27 26 52 52 H 1.09000 * 113.61100 * 89.11362 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6890 -1.2648 6 7 4.0676 -1.2492 0.0003 7 6 4.9611 -2.2583 0.0004 8 8 5.3627 -2.7124 1.0508 9 6 5.4609 -2.8222 -1.3046 10 16 6.6399 -4.1552 -0.9737 11 6 7.0508 -4.6170 -2.6237 12 1 6.5962 -4.1026 -3.4575 13 6 7.9578 -5.6425 -2.8520 14 7 8.5114 -6.2697 -1.8357 15 14 8.3927 -6.1325 -4.6012 16 1 7.6393 -5.2804 -5.5559 17 1 9.8504 -5.9504 -4.8184 18 1 8.0338 -7.5568 -4.8201 19 6 3.5712 -0.6888 1.2645 20 6 2.0396 -0.7207 1.2502 21 1 1.6970 -1.7553 1.2388 22 6 1.5025 -0.0186 2.4990 23 7 1.8923 -0.7790 3.6940 24 6 1.3932 -0.1327 4.9151 25 6 1.8175 -0.9519 6.1356 26 6 0.8279 -2.0709 6.5007 27 6 1.0765 -1.7028 7.9730 28 6 1.4486 -0.2957 7.4766 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6976 -1.7557 -1.2382 33 1 1.6569 -0.2212 -2.1398 34 1 3.9411 -1.2849 -2.0993 35 1 3.9143 0.3405 -1.3680 36 1 4.6202 -3.2150 -1.8765 37 1 5.9529 -2.0351 -1.8759 38 1 9.1456 -6.9861 -1.9953 39 1 3.9142 0.3408 1.3675 40 1 3.9413 -1.2847 2.0987 41 1 1.9177 0.9875 2.5570 42 1 0.4154 0.0395 2.4439 43 1 2.8930 -0.9023 3.7336 44 1 1.8081 0.8726 4.9897 45 1 0.3054 -0.0749 4.8770 46 1 2.8543 -1.2842 6.0828 47 1 -0.1921 -1.8774 6.1686 48 1 1.1787 -3.0680 6.2347 49 1 1.9104 -2.2417 8.4230 50 1 0.1761 -1.7254 8.5869 51 1 2.3006 0.1403 7.9983 52 1 0.5983 0.3832 7.4112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132664542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -34.232166 kcal Electronic energy + Delta-G solvation = -27504.715131 eV Core-core repulsion = 23823.021325 eV Total energy + Delta-G solvation = -3681.693806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19754 -39.20692 -37.94015 -35.74964 -33.88897 -32.41700 -31.77762 -29.59908 -28.60081 -27.26655 -25.83419 -25.50335 -24.91738 -23.36512 -22.55292 -21.75429 -20.30565 -19.58508 -19.08533 -17.65612 -16.71178 -16.19635 -15.96898 -15.59982 -15.30940 -15.23345 -14.79583 -14.77766 -14.46054 -14.03760 -13.92249 -13.67362 -13.53197 -13.35367 -13.25058 -12.80527 -12.68697 -12.59159 -12.22479 -12.10704 -12.08050 -11.77305 -11.73686 -11.64143 -11.25976 -11.06544 -11.00079 -10.96643 -10.83753 -10.74191 -10.64385 -10.49323 -10.45454 -10.24825 -9.77602 -9.30163 -9.06292 -8.60777 -8.45996 -8.19831 -6.48214 -6.20467 -3.90671 2.96366 3.09721 3.22193 3.27209 3.31941 3.62389 3.81472 4.21256 4.36757 4.43979 4.50596 4.51870 4.56031 4.60751 4.69834 4.82885 4.98619 5.05413 5.12620 5.14695 5.20104 5.24661 5.26018 5.27127 5.34669 5.41486 5.44841 5.46190 5.48896 5.50782 5.58831 5.63472 5.65907 5.68648 5.70962 5.74946 5.78670 5.85176 5.90193 5.97108 6.00998 6.02948 6.05574 6.13912 6.25936 6.29446 6.68341 6.82319 7.16200 7.59990 7.61831 8.36608 8.60715 9.24909 10.87028 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.002299 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.368205 B =12177.137128 C =13926.618878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.130 4.130 5 C 0.107 3.893 6 N -0.618 5.618 7 C 0.535 3.465 8 O -0.517 6.517 9 C -0.150 4.150 10 S -0.062 6.062 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.117 3.883 20 C -0.096 4.096 21 H 0.086 0.914 22 C 0.066 3.934 23 N -0.689 5.689 24 C 0.070 3.930 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.078 0.922 43 H 0.344 0.656 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.926 17.050 10.345 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.016 4.016 6 N -0.354 5.354 7 C 0.323 3.677 8 O -0.391 6.391 9 C -0.300 4.300 10 S 0.165 5.835 11 C -0.682 4.682 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.006 4.006 20 C -0.116 4.116 21 H 0.105 0.895 22 C -0.064 4.064 23 N -0.321 5.321 24 C -0.059 4.059 25 C -0.128 4.128 26 C -0.164 4.164 27 C -0.183 4.183 28 C -0.175 4.175 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.096 0.904 43 H 0.163 0.837 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.718 15.790 11.917 27.234 hybrid contribution 0.395 1.039 -2.373 2.620 sum -18.323 16.829 9.544 26.647 Atomic orbital electron populations 1.21888 0.95028 1.02105 1.01489 1.21097 0.95706 0.99275 0.94301 0.91213 1.21988 0.95307 1.01707 0.97815 1.21734 0.93971 0.99232 0.86678 1.48071 1.44474 1.36390 1.06501 1.20323 0.77795 0.78277 0.91324 1.90687 1.56485 1.58611 1.33304 1.23545 1.04612 1.04635 0.97245 1.85409 1.49829 1.36878 1.11366 1.22898 1.30506 1.22670 0.92128 0.90923 1.24994 0.95136 0.95264 0.98249 1.70029 1.27661 1.22276 1.30298 0.86121 0.78295 0.78427 0.82672 1.19626 1.20583 1.20572 1.21547 0.92880 0.98362 0.87795 1.21591 0.95151 1.01289 0.93526 0.89544 1.22029 1.00828 0.94303 0.89230 1.60478 1.19269 1.50983 1.01373 1.21954 1.00049 0.94868 0.89015 1.22553 1.00151 0.96967 0.93115 1.22859 0.99281 0.99064 0.95209 1.22843 1.01511 0.96954 0.97040 1.22931 1.01297 0.96766 0.96541 0.92450 0.92508 0.92737 0.91128 0.90693 0.89188 0.91668 0.89314 0.89367 0.92255 0.92460 0.88810 0.95368 0.90416 0.83719 0.95449 0.91136 0.89078 0.90317 0.91295 0.90250 0.91696 0.91640 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.82 37.16 0.33 -0.74 16 2 C -0.08 -0.71 2.23 -90.58 -0.20 -0.91 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -1.18 5.36 -26.61 -0.14 -1.33 16 5 C 0.11 1.19 6.34 -3.67 -0.02 1.16 16 6 N -0.62 -8.90 2.97 -172.71 -0.51 -9.41 16 7 C 0.53 10.35 7.72 -10.99 -0.08 10.27 16 8 O -0.52 -11.94 15.27 5.55 0.08 -11.86 16 9 C -0.15 -3.09 4.50 36.00 0.16 -2.92 16 10 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 11 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 12 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 15 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 C 0.12 1.44 5.35 -3.71 -0.02 1.42 16 20 C -0.10 -0.95 2.09 -90.50 -0.19 -1.14 16 21 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 22 C 0.07 0.56 4.90 -3.82 -0.02 0.55 16 23 N -0.69 -6.58 6.50 -113.77 -0.74 -7.32 16 24 C 0.07 0.57 5.52 -3.82 -0.02 0.55 16 25 C -0.11 -0.89 3.90 -89.80 -0.35 -1.24 16 26 C -0.13 -1.05 7.63 -25.92 -0.20 -1.24 16 27 C -0.15 -1.06 8.08 -25.92 -0.21 -1.26 16 28 C -0.14 -0.96 7.64 -25.92 -0.20 -1.16 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.37 6.29 -51.93 -0.33 0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.03 5.94 -51.93 -0.31 0.72 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16 37 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.34 5.82 -51.93 -0.30 1.04 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.63 6.14 -51.93 -0.32 0.31 16 43 H 0.34 3.50 7.12 -39.29 -0.28 3.23 16 44 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 46 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 47 H 0.08 0.63 7.90 -51.93 -0.41 0.22 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 413.51 15.07 6.23 6.23 Total: -1.00 -33.25 413.51 -11.88 -45.13 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -9.47 Total: 1.22 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.97 Total: -10.99 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.52 Total: -42.30 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.25 -11.88 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132664542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.897 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds