Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46188 * 2 1 4 4 C 1.53043 * 109.46046 * 119.97472 * 2 1 3 5 5 C 1.53192 * 109.31235 * 181.37222 * 4 2 1 6 6 N 1.46923 * 108.77564 * 305.36054 * 5 4 2 7 7 C 1.34777 * 120.63273 * 233.58447 * 6 5 4 8 8 O 1.21283 * 119.99750 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.99928 * 0.28271 * 7 6 5 10 10 S 1.80999 * 109.46903 * 179.72354 * 9 7 6 11 11 C 1.76200 * 99.99730 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00351 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00095 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99941 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00384 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47506 * 89.99666 * 15 13 11 17 17 H 1.48498 * 109.47217 * 210.00061 * 15 13 11 18 18 H 1.48502 * 109.46767 * 329.99807 * 15 13 11 19 19 C 1.46929 * 118.73574 * 53.86561 * 6 5 4 20 20 C 1.53036 * 109.44935 * 240.03432 * 2 1 3 21 21 H 1.08994 * 109.49976 * 298.60673 * 20 2 1 22 22 C 1.53007 * 109.49910 * 58.67488 * 20 2 1 23 23 N 1.46893 * 109.47042 * 185.00094 * 22 20 2 24 24 C 1.46905 * 110.99792 * 179.97438 * 23 22 20 25 25 C 1.52996 * 109.46984 * 179.97438 * 24 23 22 26 26 C 1.53787 * 113.61495 * 272.49377 * 25 24 23 27 27 C 1.53781 * 87.07969 * 220.02277 * 26 25 24 28 28 C 1.53772 * 87.08484 * 25.43234 * 27 26 25 29 29 H 1.09001 * 109.47029 * 300.02845 * 1 2 3 30 30 H 1.08999 * 109.46511 * 60.02711 * 1 2 3 31 31 H 1.09000 * 109.46741 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.49723 * 61.42021 * 4 2 1 33 33 H 1.09006 * 109.49656 * 301.32570 * 4 2 1 34 34 H 1.09003 * 109.58465 * 185.57606 * 5 4 2 35 35 H 1.08996 * 109.58389 * 65.15616 * 5 4 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 0.97002 * 120.00288 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.58815 * 65.92331 * 19 6 5 40 40 H 1.08999 * 109.58776 * 186.34974 * 19 6 5 41 41 H 1.09000 * 109.46254 * 304.99725 * 22 20 2 42 42 H 1.08995 * 109.46887 * 64.99336 * 22 20 2 43 43 H 1.00900 * 111.00137 * 303.94535 * 23 22 20 44 44 H 1.08994 * 109.46865 * 299.99656 * 24 23 22 45 45 H 1.08999 * 109.46899 * 59.99787 * 24 23 22 46 46 H 1.08996 * 112.85468 * 43.80563 * 25 24 23 47 47 H 1.08996 * 113.60959 * 334.57288 * 26 25 24 48 48 H 1.08995 * 113.60962 * 105.47293 * 26 25 24 49 49 H 1.09004 * 113.61075 * 270.87770 * 27 26 25 50 50 H 1.09003 * 113.60977 * 139.98579 * 27 26 25 51 51 H 1.08996 * 113.61618 * 220.02031 * 28 27 26 52 52 H 1.08998 * 113.68875 * 89.12405 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6890 1.2640 6 7 4.0676 -1.2494 -0.0003 7 6 4.9617 -2.2579 -0.0005 8 8 5.3640 -2.7115 -1.0509 9 6 5.4571 -2.8259 1.3046 10 16 6.6325 -4.1619 0.9736 11 6 7.0384 -4.6280 2.6236 12 1 6.5838 -4.1137 3.4574 13 6 7.9417 -5.6568 2.8519 14 7 8.4948 -6.2846 1.8356 15 14 8.3716 -6.1515 4.6011 16 1 7.4337 -7.2066 5.0619 17 1 9.7614 -6.6729 4.6408 18 1 8.2613 -4.9680 5.4914 19 6 3.5754 -0.6852 -1.2645 20 6 2.0396 -0.7208 -1.2501 21 1 1.6969 -1.7554 -1.2387 22 6 1.5026 -0.0186 -2.4990 23 7 1.8923 -0.7790 -3.6939 24 6 1.3922 -0.1333 -4.9150 25 6 1.8176 -0.9519 -6.1356 26 6 3.2046 -0.5712 -6.6798 27 6 2.6101 -0.7352 -8.0885 28 6 1.2405 -0.4271 -7.4609 29 1 -0.3633 0.5143 0.8897 30 1 -0.3632 0.5134 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6976 -1.7557 1.2382 33 1 1.6574 -0.2209 2.1399 34 1 3.9417 -1.2851 2.0981 35 1 3.9145 0.3404 1.3672 36 1 5.9508 -2.0413 1.8781 37 1 4.6140 -3.2165 1.8742 38 1 9.1263 -7.0034 1.9951 39 1 3.9188 0.3447 -1.3633 40 1 3.9483 -1.2786 -2.0993 41 1 0.4155 0.0395 -2.4439 42 1 1.9178 0.9874 -2.5570 43 1 2.8929 -0.9023 -3.7336 44 1 0.3045 -0.0763 -4.8765 45 1 1.8064 0.8722 -4.9900 46 1 1.6817 -2.0241 -5.9945 47 1 3.4994 0.4519 -6.4465 48 1 3.9805 -1.3001 -6.4457 49 1 2.6923 -1.7484 -8.4819 50 1 2.9470 0.0230 -8.7955 51 1 0.4308 -1.0395 -7.8575 52 1 0.9970 0.6352 -7.4408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132664543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -34.552522 kcal Electronic energy + Delta-G solvation = -27554.240277 eV Core-core repulsion = 23872.532580 eV Total energy + Delta-G solvation = -3681.707697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19094 -39.24543 -37.93072 -35.73066 -33.88652 -32.41358 -31.75597 -29.59637 -28.60190 -27.26250 -25.91164 -25.49645 -24.89348 -23.36467 -22.56512 -21.73458 -20.29044 -19.56381 -19.09695 -17.65908 -16.76369 -16.35682 -15.81999 -15.58198 -15.34053 -15.11939 -14.92826 -14.79074 -14.40114 -14.01457 -13.92860 -13.78205 -13.46774 -13.35043 -13.02955 -12.89070 -12.72887 -12.58467 -12.35908 -12.15439 -12.07377 -11.78594 -11.70707 -11.69525 -11.22660 -11.05269 -11.00766 -10.94909 -10.83600 -10.74846 -10.66525 -10.49462 -10.44386 -10.23507 -9.78410 -9.29983 -9.05272 -8.63510 -8.45762 -8.20137 -6.48047 -6.20094 -3.90434 2.96603 3.09878 3.23154 3.27169 3.31232 3.62534 3.82835 4.21580 4.33687 4.42640 4.50092 4.51669 4.55735 4.59742 4.63858 4.81396 4.98586 5.07200 5.12301 5.14915 5.17678 5.24047 5.25654 5.29160 5.38034 5.41940 5.44386 5.46074 5.49344 5.49956 5.58608 5.63658 5.65894 5.67622 5.71014 5.75035 5.78540 5.79176 5.90313 5.96304 5.98501 6.02916 6.04207 6.14025 6.24463 6.29824 6.68527 6.83156 7.17357 7.60018 7.61882 8.36571 8.60845 9.25079 10.87310 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.002358 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.097032 B =11869.705113 C =13799.276023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.130 4.130 5 C 0.107 3.893 6 N -0.618 5.618 7 C 0.535 3.465 8 O -0.516 6.516 9 C -0.150 4.150 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.117 3.883 20 C -0.096 4.096 21 H 0.086 0.914 22 C 0.065 3.935 23 N -0.690 5.690 24 C 0.070 3.930 25 C -0.110 4.110 26 C -0.143 4.143 27 C -0.142 4.142 28 C -0.136 4.136 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.028 0.972 43 H 0.345 0.655 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.103 17.534 -10.435 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.016 4.016 6 N -0.354 5.354 7 C 0.323 3.677 8 O -0.391 6.391 9 C -0.300 4.300 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.006 4.006 20 C -0.115 4.115 21 H 0.105 0.895 22 C -0.064 4.064 23 N -0.322 5.322 24 C -0.059 4.059 25 C -0.128 4.128 26 C -0.180 4.180 27 C -0.180 4.180 28 C -0.174 4.174 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.164 0.836 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.118 0.882 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.887 16.275 -12.008 27.000 hybrid contribution 0.370 1.042 2.373 2.618 sum -17.518 17.316 -9.635 26.449 Atomic orbital electron populations 1.21888 0.95025 1.02111 1.01494 1.21098 0.95707 0.99274 0.94307 0.91216 1.21989 0.95301 1.01707 0.97807 1.21720 0.93986 0.99221 0.86695 1.48055 1.44504 1.36360 1.06514 1.20327 0.77767 0.78310 0.91327 1.90687 1.56414 1.58668 1.33299 1.23547 1.04627 1.04620 0.97246 1.85406 1.50174 1.36527 1.11331 1.22857 1.30770 1.22518 0.92119 0.90978 1.24993 0.95109 0.95271 0.98240 1.70022 1.27791 1.22107 1.30358 0.86175 0.77833 0.78793 0.82736 1.20273 1.20763 1.19710 1.21642 0.92869 0.98298 0.87794 1.21672 0.95096 1.01275 0.93499 0.89520 1.22032 1.00833 0.94323 0.89245 1.60481 1.19408 1.50926 1.01384 1.21937 1.00077 0.94819 0.89069 1.22608 0.96269 1.01029 0.92915 1.23021 0.97007 1.01693 0.96317 1.22788 0.96647 1.01874 0.96648 1.22908 0.97127 1.01122 0.96231 0.92734 0.92503 0.92443 0.91119 0.90691 0.89194 0.91687 0.89376 0.89313 0.92202 0.92435 0.88806 0.90394 0.95376 0.83633 0.91177 0.95401 0.88206 0.90462 0.91123 0.90118 0.91663 0.91505 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.82 37.16 0.33 -0.74 16 2 C -0.08 -0.71 2.23 -90.58 -0.20 -0.91 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -1.18 5.36 -26.61 -0.14 -1.33 16 5 C 0.11 1.19 6.34 -3.71 -0.02 1.16 16 6 N -0.62 -8.91 2.97 -172.50 -0.51 -9.42 16 7 C 0.53 10.35 7.72 -10.98 -0.08 10.27 16 8 O -0.52 -11.94 15.27 5.55 0.08 -11.85 16 9 C -0.15 -3.09 4.50 36.01 0.16 -2.93 16 10 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 11 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 15 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.12 1.44 5.38 -3.48 -0.02 1.42 16 20 C -0.10 -0.96 2.10 -90.27 -0.19 -1.15 16 21 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 22 C 0.07 0.57 4.90 -3.82 -0.02 0.55 16 23 N -0.69 -6.66 6.50 -113.78 -0.74 -7.40 16 24 C 0.07 0.57 5.52 -3.82 -0.02 0.55 16 25 C -0.11 -0.89 3.90 -89.80 -0.35 -1.24 16 26 C -0.14 -1.16 7.63 -25.92 -0.20 -1.36 16 27 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 28 C -0.14 -0.94 7.64 -25.92 -0.20 -1.14 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 6.29 -51.93 -0.33 0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.68 7.95 -51.91 -0.41 1.27 16 37 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.35 5.82 -51.93 -0.30 1.05 16 41 H 0.08 0.64 6.14 -51.93 -0.32 0.32 16 42 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.34 3.58 7.13 -39.29 -0.28 3.30 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.22 7.84 -51.93 -0.41 -0.19 16 46 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 413.55 15.07 6.23 6.23 Total: -1.00 -33.18 413.55 -11.88 -45.06 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.47 Total: 1.46 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.97 Total: -11.07 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.52 Total: -42.39 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.18 -11.88 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132664543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.506 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds