Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46188 * 2 1 4 4 C 1.53043 * 109.46046 * 119.97472 * 2 1 3 5 5 C 1.53192 * 109.31235 * 181.37222 * 4 2 1 6 6 N 1.46923 * 108.77564 * 305.36054 * 5 4 2 7 7 C 1.34777 * 120.63273 * 233.58447 * 6 5 4 8 8 O 1.21283 * 119.99750 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.99928 * 0.28271 * 7 6 5 10 10 S 1.80999 * 109.46903 * 179.72354 * 9 7 6 11 11 C 1.76200 * 99.99730 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00351 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00095 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99941 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00384 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47506 * 89.99666 * 15 13 11 17 17 H 1.48498 * 109.47217 * 210.00061 * 15 13 11 18 18 H 1.48502 * 109.46767 * 329.99807 * 15 13 11 19 19 C 1.46929 * 118.73574 * 53.86561 * 6 5 4 20 20 C 1.53036 * 109.44935 * 240.03432 * 2 1 3 21 21 H 1.08994 * 109.49976 * 298.60673 * 20 2 1 22 22 C 1.53007 * 109.49910 * 58.67488 * 20 2 1 23 23 N 1.46893 * 109.47042 * 185.00094 * 22 20 2 24 24 C 1.46905 * 110.99792 * 179.97438 * 23 22 20 25 25 C 1.52996 * 109.46984 * 179.97438 * 24 23 22 26 26 C 1.53787 * 113.61495 * 272.49377 * 25 24 23 27 27 C 1.53781 * 87.07969 * 220.02277 * 26 25 24 28 28 C 1.53772 * 87.08484 * 25.43234 * 27 26 25 29 29 H 1.09001 * 109.47029 * 300.02845 * 1 2 3 30 30 H 1.08999 * 109.46511 * 60.02711 * 1 2 3 31 31 H 1.09000 * 109.46741 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.49723 * 61.42021 * 4 2 1 33 33 H 1.09006 * 109.49656 * 301.32570 * 4 2 1 34 34 H 1.09003 * 109.58465 * 185.57606 * 5 4 2 35 35 H 1.08996 * 109.58389 * 65.15616 * 5 4 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 0.97002 * 120.00288 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.58815 * 65.92331 * 19 6 5 40 40 H 1.08999 * 109.58776 * 186.34974 * 19 6 5 41 41 H 1.09000 * 109.46254 * 304.99725 * 22 20 2 42 42 H 1.08995 * 109.46887 * 64.99336 * 22 20 2 43 43 H 1.00900 * 111.00137 * 303.94535 * 23 22 20 44 44 H 1.08994 * 109.46865 * 299.99656 * 24 23 22 45 45 H 1.08999 * 109.46899 * 59.99787 * 24 23 22 46 46 H 1.08996 * 112.85468 * 43.80563 * 25 24 23 47 47 H 1.08996 * 113.60959 * 334.57288 * 26 25 24 48 48 H 1.08995 * 113.60962 * 105.47293 * 26 25 24 49 49 H 1.09004 * 113.61075 * 270.87770 * 27 26 25 50 50 H 1.09003 * 113.60977 * 139.98579 * 27 26 25 51 51 H 1.08996 * 113.61618 * 220.02031 * 28 27 26 52 52 H 1.08998 * 113.68875 * 89.12405 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6890 1.2640 6 7 4.0676 -1.2494 -0.0003 7 6 4.9617 -2.2579 -0.0005 8 8 5.3640 -2.7115 -1.0509 9 6 5.4571 -2.8259 1.3046 10 16 6.6325 -4.1619 0.9736 11 6 7.0384 -4.6280 2.6236 12 1 6.5838 -4.1137 3.4574 13 6 7.9417 -5.6568 2.8519 14 7 8.4948 -6.2846 1.8356 15 14 8.3716 -6.1515 4.6011 16 1 7.4337 -7.2066 5.0619 17 1 9.7614 -6.6729 4.6408 18 1 8.2613 -4.9680 5.4914 19 6 3.5754 -0.6852 -1.2645 20 6 2.0396 -0.7208 -1.2501 21 1 1.6969 -1.7554 -1.2387 22 6 1.5026 -0.0186 -2.4990 23 7 1.8923 -0.7790 -3.6939 24 6 1.3922 -0.1333 -4.9150 25 6 1.8176 -0.9519 -6.1356 26 6 3.2046 -0.5712 -6.6798 27 6 2.6101 -0.7352 -8.0885 28 6 1.2405 -0.4271 -7.4609 29 1 -0.3633 0.5143 0.8897 30 1 -0.3632 0.5134 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6976 -1.7557 1.2382 33 1 1.6574 -0.2209 2.1399 34 1 3.9417 -1.2851 2.0981 35 1 3.9145 0.3404 1.3672 36 1 5.9508 -2.0413 1.8781 37 1 4.6140 -3.2165 1.8742 38 1 9.1263 -7.0034 1.9951 39 1 3.9188 0.3447 -1.3633 40 1 3.9483 -1.2786 -2.0993 41 1 0.4155 0.0395 -2.4439 42 1 1.9178 0.9874 -2.5570 43 1 2.8929 -0.9023 -3.7336 44 1 0.3045 -0.0763 -4.8765 45 1 1.8064 0.8722 -4.9900 46 1 1.6817 -2.0241 -5.9945 47 1 3.4994 0.4519 -6.4465 48 1 3.9805 -1.3001 -6.4457 49 1 2.6923 -1.7484 -8.4819 50 1 2.9470 0.0230 -8.7955 51 1 0.4308 -1.0395 -7.8575 52 1 0.9970 0.6352 -7.4408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132664543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -54.603356 kcal Electronic energy + Delta-G solvation = -27555.109746 eV Core-core repulsion = 23872.532580 eV Total energy + Delta-G solvation = -3682.577167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33478 -39.94204 -39.08254 -36.60595 -34.89493 -34.58687 -32.65569 -31.02851 -29.37369 -28.22222 -27.62259 -26.53412 -25.75229 -24.32242 -23.24955 -22.50423 -21.25951 -20.38502 -20.19535 -19.50123 -18.15651 -17.29360 -16.89818 -16.84788 -16.65120 -16.36742 -15.97298 -15.75086 -15.57359 -15.21280 -14.93916 -14.68198 -14.58146 -14.46403 -14.22435 -13.95568 -13.74927 -13.49458 -13.32555 -13.17691 -13.03377 -12.89773 -12.83900 -12.70458 -12.63607 -12.43085 -12.39269 -12.00657 -11.76755 -11.70225 -11.49632 -11.36908 -11.30477 -11.14722 -11.08728 -10.95109 -10.77674 -10.26617 -9.65323 -9.34502 -8.68158 -8.34881 -6.13552 1.25099 1.42310 1.45500 1.56032 1.57653 2.10925 2.27054 2.99081 3.13482 3.24799 3.61721 3.70556 3.75067 3.78184 3.82778 3.89867 3.98578 3.99579 4.01321 4.23592 4.25279 4.33332 4.41535 4.46450 4.50714 4.55692 4.56679 4.63916 4.74899 4.77802 4.80709 4.83795 4.84669 4.90196 4.94077 5.00107 5.01647 5.06274 5.09118 5.13477 5.16211 5.22945 5.36326 5.41081 5.41911 5.55547 5.59470 5.61620 6.15277 6.19325 6.29830 6.38272 7.06012 7.14728 8.74441 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.002358 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.097032 B =11869.705113 C =13799.276023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.097 3.903 6 N -0.605 5.605 7 C 0.530 3.470 8 O -0.567 6.567 9 C -0.122 4.122 10 S -0.153 6.153 11 C -0.545 4.545 12 H 0.083 0.917 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.115 3.885 20 C -0.085 4.085 21 H 0.058 0.942 22 C 0.071 3.929 23 N -0.707 5.707 24 C 0.075 3.925 25 C -0.113 4.113 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.271 0.729 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.041 0.959 43 H 0.337 0.663 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.053 0.947 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.024 20.184 -8.642 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.105 0.895 4 C -0.163 4.163 5 C -0.025 4.025 6 N -0.339 5.339 7 C 0.318 3.682 8 O -0.445 6.445 9 C -0.273 4.273 10 S 0.074 5.926 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.181 1.181 19 C -0.007 4.007 20 C -0.105 4.105 21 H 0.077 0.923 22 C -0.058 4.058 23 N -0.338 5.338 24 C -0.054 4.054 25 C -0.131 4.131 26 C -0.184 4.184 27 C -0.179 4.179 28 C -0.165 4.165 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.155 0.845 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.864 18.975 -10.201 29.303 hybrid contribution 0.888 0.307 1.767 2.001 sum -18.976 19.282 -8.435 28.338 Atomic orbital electron populations 1.21849 0.93826 1.01763 1.02663 1.21099 0.96621 0.99585 0.92602 0.89480 1.21982 0.93551 1.01297 0.99484 1.22076 0.95508 1.00250 0.84618 1.48082 1.42496 1.34463 1.08852 1.20152 0.78666 0.79362 0.90013 1.90670 1.58663 1.60725 1.34461 1.23353 1.03114 1.02305 0.98510 1.85606 1.53311 1.40556 1.13137 1.23185 1.31076 1.22940 0.92034 0.89893 1.26157 0.94725 0.95025 1.03352 1.70192 1.28595 1.22827 1.33209 0.84939 0.77623 0.78879 0.76444 1.19291 1.20282 1.18062 1.21802 0.94559 0.98515 0.85858 1.21562 0.93048 1.00309 0.95563 0.92307 1.22013 1.01342 0.94425 0.88028 1.60514 1.18941 1.51895 1.02452 1.21930 1.00286 0.94908 0.88293 1.22572 0.96592 1.00121 0.93861 1.23041 0.96604 1.01500 0.97234 1.22800 0.96829 1.02070 0.96239 1.22882 0.96928 1.01797 0.94900 0.91313 0.91618 0.93572 0.92802 0.87905 0.89547 0.89026 0.87499 0.87714 0.91994 0.90277 0.91499 0.89346 0.94062 0.84493 0.90612 0.94613 0.90005 0.89900 0.92770 0.90405 0.90754 0.91081 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.82 71.98 0.63 -0.99 16 2 C -0.08 -1.09 2.23 -10.77 -0.02 -1.12 16 3 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.13 -1.92 5.36 30.67 0.16 -1.76 16 5 C 0.10 1.90 6.34 86.36 0.55 2.45 16 6 N -0.61 -16.99 2.97 -818.05 -2.43 -19.41 16 7 C 0.53 20.95 7.72 87.66 0.68 21.62 16 8 O -0.57 -27.59 15.27 -3.04 -0.05 -27.63 16 9 C -0.12 -5.05 4.50 71.24 0.32 -4.72 16 10 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 11 C -0.54 -31.49 9.50 67.95 0.65 -30.84 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.69 5.49 84.86 0.47 1.16 16 14 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 15 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 C 0.12 2.77 5.38 86.51 0.47 3.23 16 20 C -0.09 -1.60 2.10 -10.57 -0.02 -1.62 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 22 C 0.07 1.11 4.90 86.31 0.42 1.53 16 23 N -0.71 -13.48 6.50 -513.90 -3.34 -16.82 16 24 C 0.07 1.15 5.52 86.30 0.48 1.63 16 25 C -0.11 -1.83 3.90 -10.26 -0.04 -1.87 16 26 C -0.15 -2.41 7.63 31.12 0.24 -2.17 16 27 C -0.14 -1.99 8.08 31.12 0.25 -1.73 16 28 C -0.13 -1.62 7.64 31.12 0.24 -1.39 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.64 6.29 -2.39 -0.02 0.63 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.09 1.77 5.93 -2.39 -0.01 1.76 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 4.00 7.95 -2.39 -0.02 3.98 16 37 H 0.10 3.97 7.69 -2.40 -0.02 3.95 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.07 2.01 5.82 -2.39 -0.01 2.00 16 41 H 0.09 1.22 6.14 -2.39 -0.01 1.21 16 42 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.34 7.27 7.13 -89.69 -0.64 6.63 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.04 0.50 7.84 -2.39 -0.02 0.48 16 46 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.08 1.25 7.89 -2.39 -0.02 1.23 16 48 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 51 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 Total: -1.00 -75.73 413.55 1.04 -74.69 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.24 Total: 26.18 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 5.46 Total: -16.59 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -5.48 Total: -92.66 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -75.73 1.04 -74.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132664543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.084 kcal (2) G-P(sol) polarization free energy of solvation -75.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds