Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50707 * 119.99874 * 2 1 4 4 C 1.30993 * 120.00389 * 179.97438 * 2 1 3 5 5 C 1.50706 * 119.99602 * 353.78906 * 4 2 1 6 6 N 1.46906 * 109.47276 * 236.00903 * 5 4 2 7 7 C 1.46891 * 111.00328 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47424 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.49747 * 304.93877 * 8 7 6 10 10 C 1.53196 * 109.49553 * 64.99933 * 8 7 6 11 11 N 1.46925 * 108.77718 * 174.58688 * 10 8 7 12 12 C 1.34777 * 120.62760 * 126.36483 * 11 10 8 13 13 O 1.21278 * 120.00553 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99796 * 180.02562 * 12 11 10 15 15 S 1.80993 * 109.47475 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00310 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00295 * 359.72551 * 16 15 14 18 18 C 1.38797 * 120.00296 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99937 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00365 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47069 * 60.00120 * 20 18 16 22 22 H 1.48499 * 109.47101 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46957 * 300.00324 * 20 18 16 24 24 C 1.46921 * 118.73612 * 306.64738 * 11 10 8 25 25 C 1.52760 * 109.01114 * 53.30813 * 24 11 10 26 26 C 1.53033 * 109.49899 * 184.83675 * 8 7 6 27 27 H 1.09002 * 109.46177 * 58.66530 * 26 8 7 28 28 C 1.53001 * 109.46258 * 298.69237 * 26 8 7 29 29 H 1.08995 * 109.47302 * 265.05277 * 1 2 3 30 30 H 1.09005 * 109.46800 * 25.05197 * 1 2 3 31 31 H 1.08996 * 109.46965 * 145.04719 * 1 2 3 32 32 H 1.08997 * 109.46816 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47035 * 299.99634 * 3 2 1 34 34 H 1.08996 * 109.46936 * 59.99836 * 3 2 1 35 35 H 1.07996 * 120.00878 * 173.78672 * 4 2 1 36 36 H 1.08999 * 109.47403 * 116.00626 * 5 4 2 37 37 H 1.09003 * 109.47508 * 356.00581 * 5 4 2 38 38 H 1.00903 * 110.99627 * 56.04165 * 6 5 4 39 39 H 1.08999 * 109.47154 * 59.99495 * 7 6 5 40 40 H 1.09004 * 109.47249 * 299.99846 * 7 6 5 41 41 H 1.09002 * 109.58816 * 54.80113 * 10 8 7 42 42 H 1.09001 * 109.70424 * 294.44642 * 10 8 7 43 43 H 1.09004 * 109.47262 * 60.00126 * 14 12 11 44 44 H 1.09008 * 109.46790 * 300.00615 * 14 12 11 45 45 H 0.97003 * 120.00312 * 179.97438 * 19 18 16 46 46 H 1.09008 * 109.58591 * 173.14480 * 24 11 10 47 47 H 1.09000 * 109.59022 * 293.56380 * 24 11 10 48 48 H 1.09002 * 109.56266 * 185.55158 * 25 24 11 49 49 H 1.08997 * 109.36120 * 65.49730 * 25 24 11 50 50 H 1.08997 * 109.47242 * 60.00030 * 28 26 8 51 51 H 1.09005 * 109.47479 * 180.02562 * 28 26 8 52 52 H 1.09004 * 109.46986 * 300.00129 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4152 -2.4356 0.1423 6 7 1.9487 -3.1842 1.2883 7 6 1.2425 -4.4610 1.4579 8 6 1.8251 -5.2105 2.6578 9 1 2.9013 -5.3243 2.5281 10 6 1.5454 -4.4196 3.9396 11 7 1.9945 -5.2126 5.0921 12 6 2.8452 -4.6884 5.9966 13 8 3.2471 -3.5519 5.8637 14 6 3.2972 -5.5147 7.1731 15 16 4.4258 -4.5389 8.1977 16 6 4.7865 -5.7140 9.4600 17 1 4.3352 -6.6948 9.4298 18 6 5.6467 -5.3777 10.4961 19 7 6.1927 -4.1806 10.5359 20 14 6.0298 -6.6238 11.8340 21 1 6.6534 -7.8267 11.2262 22 1 6.9670 -6.0228 12.8166 23 1 4.7730 -7.0124 12.5230 24 6 1.5035 -6.5898 5.2364 25 6 1.7794 -7.3545 3.9431 26 6 1.1738 -6.5914 2.7628 27 1 1.3504 -7.1472 1.8420 28 6 -0.3322 -6.4295 2.9796 29 1 -0.3633 -0.0886 1.0238 30 1 -0.3633 0.9310 -0.4352 31 1 -0.3633 -0.8423 -0.5887 32 1 3.3322 1.1060 -0.0005 33 1 1.9972 1.8767 -0.8900 34 1 1.9972 1.8767 0.8899 35 1 3.2373 -1.1373 -0.1007 36 1 1.5376 -3.0257 -0.7659 37 1 0.3566 -2.2314 0.3029 38 1 1.9057 -2.6325 2.1321 39 1 1.3634 -5.0653 0.5589 40 1 0.1828 -4.2704 1.6278 41 1 0.4760 -4.2262 4.0237 42 1 2.0868 -3.4739 3.9135 43 1 3.8107 -6.4069 6.8147 44 1 2.4304 -5.8078 7.7656 45 1 6.7936 -3.9454 11.2601 46 1 2.0191 -7.0767 6.0643 47 1 0.4306 -6.5770 5.4284 48 1 1.3318 -8.3465 4.0031 49 1 2.8560 -7.4486 3.8016 50 1 -0.7640 -5.8870 2.1386 51 1 -0.7962 -7.4130 3.0548 52 1 -0.5090 -5.8733 3.9002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132664544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -56.473684 kcal Electronic energy + Delta-G solvation = -27525.496539 eV Core-core repulsion = 23842.838268 eV Total energy + Delta-G solvation = -3682.658270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48228 -39.38053 -38.25683 -36.21482 -34.64159 -34.57073 -32.63790 -30.97221 -29.54020 -28.68409 -28.21830 -27.67115 -26.13249 -25.54774 -23.97346 -22.52706 -21.21955 -19.80842 -19.03729 -18.76094 -18.22252 -17.33598 -16.88649 -16.77145 -16.61235 -16.37311 -15.98873 -15.80488 -15.52788 -15.10831 -14.87933 -14.73322 -14.55855 -14.47238 -14.30558 -14.05068 -13.86804 -13.51004 -13.23803 -13.17669 -13.14548 -12.94052 -12.86794 -12.76737 -12.64195 -12.63638 -12.36419 -12.18416 -12.07460 -11.83818 -11.72617 -11.71423 -11.38421 -11.22929 -11.13098 -10.83040 -10.26876 -9.67114 -9.59578 -9.31618 -8.68083 -8.34521 -6.13362 1.18572 1.25074 1.43850 1.45410 1.55174 1.57734 2.10986 2.27440 2.99294 3.24946 3.26885 3.62077 3.75893 3.81432 3.92086 3.97085 4.05612 4.06868 4.22654 4.25383 4.30314 4.38157 4.43252 4.44101 4.50694 4.53700 4.60852 4.64386 4.68274 4.71073 4.74589 4.82120 4.85767 4.92057 4.93801 4.98495 5.04287 5.09053 5.10436 5.16088 5.20385 5.28236 5.38110 5.40902 5.56537 5.59525 5.74214 5.91332 6.14920 6.19257 6.30397 6.37934 7.06160 7.15080 8.74564 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.002362 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.906484 B =11849.763387 C =13729.930598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.132 4.132 3 C -0.120 4.120 4 C -0.178 4.178 5 C 0.090 3.910 6 N -0.704 5.704 7 C 0.074 3.926 8 C -0.087 4.087 9 H 0.058 0.942 10 C 0.116 3.884 11 N -0.603 5.603 12 C 0.530 3.470 13 O -0.567 6.567 14 C -0.122 4.122 15 S -0.153 6.153 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.261 1.261 24 C 0.096 3.904 25 C -0.127 4.127 26 C -0.079 4.079 27 H 0.088 0.912 28 C -0.151 4.151 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.337 0.663 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.054 0.946 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.632 -3.539 -23.511 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.177 4.177 4 C -0.197 4.197 5 C -0.038 4.038 6 N -0.336 5.336 7 C -0.055 4.055 8 C -0.106 4.106 9 H 0.077 0.923 10 C -0.006 4.006 11 N -0.337 5.337 12 C 0.318 3.682 13 O -0.445 6.445 14 C -0.273 4.273 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.185 1.185 24 C -0.025 4.025 25 C -0.165 4.165 26 C -0.098 4.098 27 H 0.107 0.893 28 C -0.208 4.208 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.156 0.844 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.122 0.878 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.440 -2.038 -23.995 29.158 hybrid contribution -0.359 -1.103 1.477 1.879 sum -16.799 -3.141 -22.517 28.268 Atomic orbital electron populations 1.20895 0.91384 1.03191 1.02238 1.21933 0.96733 0.95300 0.99307 1.20888 0.99326 0.94822 1.02643 1.22640 0.99642 0.93705 1.03663 1.21002 0.96135 0.92378 0.94286 1.60446 1.58953 1.06363 1.07811 1.21974 0.95591 0.90228 0.97682 1.21460 1.00416 0.95782 0.92985 0.92303 1.21708 0.99646 0.94778 0.84503 1.48048 1.45718 1.15597 1.24338 1.20149 0.78073 0.86598 0.83387 1.90671 1.57036 1.20506 1.76328 1.23354 1.03560 1.02507 0.97853 1.85603 1.57286 1.22874 1.26823 1.23155 1.33493 1.01562 1.11144 0.89888 1.26155 0.94531 0.98155 1.00378 1.70185 1.29922 1.21429 1.33287 0.84996 0.78565 0.77642 0.76743 1.18593 1.20396 1.18537 1.22002 1.00873 0.79953 0.99721 1.21881 1.01277 0.99779 0.93534 1.21067 0.95890 0.93887 0.98956 0.89331 1.21979 0.94159 1.02711 1.01945 0.91696 0.90864 0.90896 0.92478 0.90579 0.91219 0.88116 0.90297 0.93283 0.84433 0.89745 0.93431 0.90166 0.91754 0.87715 0.87518 0.91986 0.89678 0.89038 0.87826 0.92682 0.91715 0.91123 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.94 71.24 0.64 -0.88 16 2 C -0.13 -2.16 6.05 -16.48 -0.10 -2.26 16 3 C -0.12 -1.78 10.09 71.24 0.72 -1.06 16 4 C -0.18 -3.29 9.37 25.66 0.24 -3.05 16 5 C 0.09 1.48 5.76 85.56 0.49 1.97 16 6 N -0.70 -13.87 6.49 -517.92 -3.36 -17.23 16 7 C 0.07 1.16 4.68 86.31 0.40 1.56 16 8 C -0.09 -1.63 2.32 -10.72 -0.02 -1.65 16 9 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 10 C 0.12 2.81 4.88 86.36 0.42 3.23 16 11 N -0.60 -16.99 2.98 -819.73 -2.44 -19.43 16 12 C 0.53 21.01 7.72 87.66 0.68 21.69 16 13 O -0.57 -27.72 15.27 -3.02 -0.05 -27.76 16 14 C -0.12 -5.05 4.50 71.24 0.32 -4.73 16 15 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 16 C -0.55 -31.59 9.50 67.95 0.65 -30.94 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.72 5.49 84.86 0.47 1.19 16 19 N -0.91 -56.79 13.22 21.65 0.29 -56.50 16 20 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 C 0.10 1.90 5.85 86.22 0.50 2.41 16 25 C -0.13 -1.94 5.61 30.53 0.17 -1.77 16 26 C -0.08 -1.07 2.71 -10.77 -0.03 -1.09 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 C -0.15 -1.59 8.11 71.98 0.58 -1.01 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 31 H 0.07 0.80 6.66 -2.39 -0.02 0.79 16 32 H 0.06 0.90 7.79 -2.39 -0.02 0.88 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 2.09 7.85 -2.91 -0.02 2.07 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 0.69 5.71 -2.39 -0.01 0.68 16 38 H 0.34 7.56 7.11 -89.69 -0.64 6.92 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 0.62 6.73 -2.38 -0.02 0.60 16 41 H 0.08 1.64 6.69 -2.39 -0.02 1.62 16 42 H 0.06 1.97 5.82 -2.39 -0.01 1.95 16 43 H 0.10 3.98 7.68 -2.39 -0.02 3.96 16 44 H 0.11 4.00 7.95 -2.39 -0.02 3.98 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 46 H 0.08 1.76 5.94 -2.38 -0.01 1.75 16 47 H 0.09 1.44 6.70 -2.39 -0.02 1.43 16 48 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.06 0.59 6.57 -2.39 -0.02 0.58 16 51 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 52 H 0.05 0.66 4.99 -2.38 -0.01 0.64 16 Total: -1.00 -76.52 410.80 1.70 -74.82 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.26 Total: 26.50 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 6.13 Total: -16.41 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -5.52 Total: -93.16 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -76.52 1.70 -74.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132664544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.350 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds