Wall clock time and date at job start Sat Apr 11 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50703 * 119.99972 * 2 1 4 4 C 1.30995 * 119.99787 * 179.97438 * 2 1 3 5 5 C 1.50701 * 120.00357 * 5.46728 * 4 2 1 6 6 N 1.46900 * 109.47102 * 125.45221 * 5 4 2 7 7 C 1.46898 * 110.99775 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46815 * 180.02562 * 7 6 5 9 9 H 1.08994 * 109.50089 * 305.06487 * 8 7 6 10 10 C 1.53191 * 109.52325 * 65.14772 * 8 7 6 11 11 N 1.46927 * 108.77421 * 174.60203 * 10 8 7 12 12 C 1.34784 * 120.62922 * 126.41197 * 11 10 8 13 13 O 1.21273 * 120.00329 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99659 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.46753 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99674 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00148 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99959 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99850 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00056 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47203 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46839 * 120.00158 * 20 18 16 23 23 H 1.48497 * 109.47384 * 240.00557 * 20 18 16 24 24 C 1.46925 * 118.74018 * 306.38901 * 11 10 8 25 25 C 1.53189 * 108.77309 * 53.60694 * 24 11 10 26 26 C 1.53032 * 109.31587 * 305.36541 * 25 24 11 27 27 H 1.09004 * 109.46385 * 301.34915 * 26 25 24 28 28 C 1.52999 * 109.46416 * 181.37244 * 26 25 24 29 29 H 1.08999 * 109.47401 * 234.93033 * 1 2 3 30 30 H 1.09004 * 109.46653 * 354.93379 * 1 2 3 31 31 H 1.09003 * 109.46747 * 114.92700 * 1 2 3 32 32 H 1.09004 * 109.46754 * 269.99595 * 3 2 1 33 33 H 1.09000 * 109.46949 * 29.99545 * 3 2 1 34 34 H 1.08996 * 109.47257 * 149.99852 * 3 2 1 35 35 H 1.08001 * 119.99782 * 185.46850 * 4 2 1 36 36 H 1.09003 * 109.46903 * 5.45812 * 5 4 2 37 37 H 1.08997 * 109.47246 * 245.45304 * 5 4 2 38 38 H 1.00900 * 110.99934 * 303.96267 * 6 5 4 39 39 H 1.08997 * 109.47469 * 60.00255 * 7 6 5 40 40 H 1.09004 * 109.46978 * 299.99624 * 7 6 5 41 41 H 1.09007 * 109.58580 * 294.38466 * 10 8 7 42 42 H 1.08996 * 109.59492 * 54.67086 * 10 8 7 43 43 H 1.09004 * 109.47261 * 299.99533 * 14 12 11 44 44 H 1.08997 * 109.47063 * 59.99620 * 14 12 11 45 45 H 0.97003 * 119.99886 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.58602 * 293.82135 * 24 11 10 47 47 H 1.08998 * 109.58651 * 173.40106 * 24 11 10 48 48 H 1.09003 * 109.49226 * 185.41350 * 25 24 11 49 49 H 1.09001 * 109.49584 * 65.32430 * 25 24 11 50 50 H 1.09004 * 109.46823 * 60.00026 * 28 26 25 51 51 H 1.08996 * 109.47375 * 180.02562 * 28 26 25 52 52 H 1.08995 * 109.46937 * 300.00411 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4136 -2.4367 -0.1233 6 7 1.9577 -3.2091 -1.2481 7 6 1.2504 -4.4876 -1.3997 8 6 1.8441 -5.2623 -2.5780 9 1 1.8166 -4.6408 -3.4730 10 6 3.2947 -5.6409 -2.2629 11 7 3.8068 -6.4927 -3.3450 12 6 4.9501 -6.1767 -3.9851 13 8 5.5663 -5.1809 -3.6698 14 6 5.4621 -7.0603 -5.0933 15 16 7.0034 -6.3740 -5.7488 16 6 7.3672 -7.5701 -6.9904 17 1 6.7038 -8.4085 -7.1435 18 6 8.5059 -7.4342 -7.7725 19 7 9.3141 -6.4122 -7.5862 20 14 8.8920 -8.7026 -9.0883 21 1 7.8348 -9.7456 -9.0959 22 1 8.9417 -8.0392 -10.4159 23 1 10.2059 -9.3313 -8.7995 24 6 3.0493 -7.6958 -3.7157 25 6 1.6015 -7.2942 -4.0144 26 6 1.0288 -6.5356 -2.8150 27 1 1.0773 -7.1680 -1.9285 28 6 -0.4281 -6.1626 -3.0961 29 1 -0.3634 -0.5905 0.8411 30 1 -0.3633 1.0237 0.0908 31 1 -0.3633 -0.4331 -0.9320 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0648 0.5138 34 1 3.2129 1.1748 0.5138 35 1 3.2383 -1.1366 0.0896 36 1 0.3573 -2.2334 -0.2994 37 1 1.5250 -3.0087 0.7979 38 1 1.9252 -2.6745 -2.1032 39 1 0.1930 -4.2982 -1.5848 40 1 1.3602 -5.0740 -0.4875 41 1 3.9007 -4.7377 -2.1910 42 1 3.3340 -6.1834 -1.3183 43 1 5.6465 -8.0616 -4.7040 44 1 4.7197 -7.1111 -5.8898 45 1 10.1097 -6.3170 -8.1330 46 1 3.0681 -8.4081 -2.8908 47 1 3.4934 -8.1485 -4.6022 48 1 1.0062 -8.1888 -4.1971 49 1 1.5762 -6.6536 -4.8960 50 1 -1.0094 -7.0694 -3.2638 51 1 -0.8360 -5.6220 -2.2421 52 1 -0.4768 -5.5306 -3.9827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132664545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:14 Heat of formation + Delta-G solvation = -60.632018 kcal Electronic energy + Delta-G solvation = -27297.813953 eV Core-core repulsion = 23614.975364 eV Total energy + Delta-G solvation = -3682.838589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28720 -39.28047 -38.18829 -36.20914 -34.78043 -34.58454 -32.65987 -31.04147 -29.63593 -28.74486 -28.46366 -27.65766 -26.03486 -24.29255 -23.91913 -22.66168 -21.27177 -20.35664 -19.46152 -18.75522 -18.05794 -17.28923 -16.89160 -16.79375 -16.54289 -16.22033 -15.97725 -15.56723 -15.26935 -15.06740 -14.89505 -14.56360 -14.56097 -14.48419 -14.28503 -14.07092 -13.66931 -13.49411 -13.39019 -13.29040 -13.15159 -12.91801 -12.87542 -12.74621 -12.69715 -12.62063 -12.54280 -12.28677 -11.94608 -11.84027 -11.73711 -11.67590 -11.36743 -11.19771 -11.16136 -10.78533 -10.25471 -9.66596 -9.63563 -9.25798 -8.67826 -8.34752 -6.13324 1.19050 1.25983 1.41372 1.46157 1.57598 1.60394 2.14674 2.27272 2.99204 3.25529 3.27522 3.69129 3.75035 3.79992 3.92905 3.97735 4.06210 4.06677 4.23219 4.26064 4.35895 4.41562 4.45002 4.49023 4.54054 4.57116 4.62936 4.66937 4.71620 4.73166 4.79827 4.86900 4.89990 4.92523 4.95339 5.03560 5.05669 5.07460 5.08907 5.14049 5.18351 5.24355 5.41306 5.41590 5.54475 5.63660 5.74887 5.91520 6.16119 6.19839 6.34955 6.43127 7.06167 7.18636 8.74851 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002251 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.200408 B =12438.628820 C =14194.516136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C -0.120 4.120 4 C -0.178 4.178 5 C 0.093 3.907 6 N -0.703 5.703 7 C 0.072 3.928 8 C -0.083 4.083 9 H 0.055 0.945 10 C 0.126 3.874 11 N -0.607 5.607 12 C 0.530 3.470 13 O -0.567 6.567 14 C -0.121 4.121 15 S -0.154 6.154 16 C -0.544 4.544 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 1.001 2.999 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.097 3.903 25 C -0.124 4.124 26 C -0.081 4.081 27 H 0.087 0.913 28 C -0.144 4.144 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.339 0.661 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.102 0.898 49 H 0.054 0.946 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.683 2.946 15.169 30.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.132 4.132 3 C -0.177 4.177 4 C -0.197 4.197 5 C -0.035 4.035 6 N -0.334 5.334 7 C -0.057 4.057 8 C -0.103 4.103 9 H 0.074 0.926 10 C 0.004 3.996 11 N -0.341 5.341 12 C 0.317 3.683 13 O -0.446 6.446 14 C -0.272 4.272 15 S 0.073 5.927 16 C -0.692 4.692 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.025 4.025 25 C -0.162 4.162 26 C -0.100 4.100 27 H 0.105 0.895 28 C -0.201 4.201 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.157 0.843 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.121 0.879 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.084 0.916 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.138 4.210 15.984 30.086 hybrid contribution -0.438 -1.062 -1.552 1.930 sum -25.576 3.148 14.432 29.536 Atomic orbital electron populations 1.20871 0.91192 1.03095 1.02156 1.21928 0.96768 0.95160 0.99335 1.20900 0.99733 0.94753 1.02288 1.22604 0.99528 0.93806 1.03756 1.20950 0.95940 0.91998 0.94580 1.60373 1.58651 1.06058 1.08282 1.22012 0.95678 0.90004 0.98001 1.21463 0.93520 0.97094 0.98224 0.92621 1.21556 0.94885 0.94644 0.88474 1.48166 1.22649 1.27107 1.36193 1.20151 0.80807 0.84976 0.82354 1.90674 1.58283 1.28968 1.66692 1.23356 1.01795 1.02517 0.99570 1.85624 1.24936 1.37718 1.44439 1.23221 1.12729 1.11983 1.21220 0.89895 1.26166 0.94731 0.98522 0.99897 1.70200 1.13617 1.30676 1.40334 0.84881 0.78521 0.77562 0.76821 1.17897 1.19898 1.19909 1.22068 0.92386 0.85942 1.02135 1.21973 0.94382 1.01687 0.98198 1.21107 0.95048 0.95082 0.98758 0.89486 1.21859 0.94597 1.02015 1.01655 0.90922 0.91117 0.91579 0.91378 0.90722 0.92233 0.88496 0.93245 0.90589 0.84324 0.92849 0.90231 0.91366 0.90849 0.87589 0.87687 0.91999 0.89196 0.89633 0.87940 0.92712 0.91343 0.91610 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.55 71.24 0.61 -0.71 16 2 C -0.13 -2.03 6.05 -16.48 -0.10 -2.13 16 3 C -0.12 -1.68 9.98 71.24 0.71 -0.97 16 4 C -0.18 -3.25 9.37 25.65 0.24 -3.01 16 5 C 0.09 1.50 5.88 85.56 0.50 2.00 16 6 N -0.70 -13.32 6.06 -517.93 -3.14 -16.46 16 7 C 0.07 1.09 4.83 86.31 0.42 1.51 16 8 C -0.08 -1.54 2.02 -10.71 -0.02 -1.56 16 9 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 10 C 0.13 3.27 5.54 86.36 0.48 3.74 16 11 N -0.61 -17.67 2.97 -818.90 -2.43 -20.11 16 12 C 0.53 21.45 7.72 87.66 0.68 22.12 16 13 O -0.57 -28.45 15.27 -3.01 -0.05 -28.50 16 14 C -0.12 -5.10 4.50 71.24 0.32 -4.78 16 15 S -0.15 -8.88 20.57 -56.49 -1.16 -10.04 16 16 C -0.54 -31.62 9.50 67.96 0.65 -30.98 16 17 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 18 C 0.01 0.66 5.49 84.86 0.47 1.12 16 19 N -0.91 -56.93 13.22 21.65 0.29 -56.65 16 20 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.10 1.94 6.34 86.36 0.55 2.49 16 25 C -0.12 -1.90 5.36 30.67 0.16 -1.73 16 26 C -0.08 -1.09 2.23 -10.77 -0.02 -1.11 16 27 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 28 C -0.14 -1.51 8.82 71.98 0.63 -0.87 16 29 H 0.07 0.72 7.84 -2.39 -0.02 0.70 16 30 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 31 H 0.07 0.73 7.67 -2.39 -0.02 0.72 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.82 8.01 -2.39 -0.02 0.80 16 34 H 0.06 0.88 8.04 -2.39 -0.02 0.86 16 35 H 0.10 2.09 8.02 -2.91 -0.02 2.07 16 36 H 0.05 0.65 5.88 -2.39 -0.01 0.64 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.34 6.86 8.72 -89.69 -0.78 6.08 16 39 H 0.05 0.65 6.14 -2.39 -0.01 0.63 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 2.29 6.79 -2.38 -0.02 2.28 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 43 H 0.11 4.04 7.94 -2.39 -0.02 4.02 16 44 H 0.10 4.02 7.69 -2.40 -0.02 4.00 16 45 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 47 H 0.09 1.80 5.93 -2.39 -0.01 1.78 16 48 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.07 0.59 6.29 -2.39 -0.02 0.57 16 52 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -77.31 419.71 1.90 -75.41 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.10 Total: 25.07 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 6.27 Total: -14.87 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -5.29 Total: -93.21 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.50 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -77.31 1.90 -75.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132664545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.781 kcal (2) G-P(sol) polarization free energy of solvation -77.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds