Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00310 * 2 1 4 4 C 1.53005 * 109.46736 * 293.95229 * 3 2 1 5 5 C 1.52998 * 109.46859 * 180.02562 * 4 3 2 6 6 C 1.53009 * 117.49735 * 243.74545 * 5 4 3 7 7 C 1.52999 * 117.49704 * 175.08785 * 5 4 3 8 8 C 1.46903 * 110.99460 * 123.95174 * 2 1 3 9 9 C 1.53000 * 109.47329 * 66.04786 * 8 2 1 10 10 H 1.08998 * 109.58232 * 309.14039 * 9 8 2 11 11 C 1.53193 * 109.58583 * 188.85932 * 9 8 2 12 12 C 1.53040 * 109.31031 * 185.43229 * 11 9 8 13 13 C 1.53041 * 109.53828 * 61.37005 * 12 11 9 14 14 C 1.53200 * 109.30973 * 298.62971 * 13 12 11 15 15 N 1.46928 * 109.70350 * 69.50144 * 9 8 2 16 16 C 1.34773 * 120.63185 * 353.48541 * 15 9 8 17 17 O 1.21285 * 119.99877 * 5.94304 * 16 15 9 18 18 C 1.50696 * 120.00125 * 185.94320 * 16 15 9 19 19 S 1.81006 * 109.47290 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99790 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00325 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99646 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00118 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00211 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47172 * 89.99755 * 24 22 20 26 26 H 1.48500 * 109.47132 * 210.00240 * 24 22 20 27 27 H 1.48502 * 109.46800 * 329.99692 * 24 22 20 28 28 H 1.08997 * 109.47235 * 296.05039 * 1 2 3 29 29 H 1.09002 * 109.46911 * 56.05034 * 1 2 3 30 30 H 1.09001 * 109.47374 * 176.04710 * 1 2 3 31 31 H 1.09001 * 109.46924 * 53.94709 * 3 2 1 32 32 H 1.08997 * 109.46999 * 173.95348 * 3 2 1 33 33 H 1.08999 * 109.46889 * 300.00209 * 4 3 2 34 34 H 1.09002 * 109.47241 * 59.99784 * 4 3 2 35 35 H 1.08996 * 115.55213 * 29.41389 * 5 4 3 36 36 H 1.09001 * 117.49270 * 0.02562 * 6 5 4 37 37 H 1.08993 * 117.49828 * 145.01752 * 6 5 4 38 38 H 1.08999 * 117.49937 * 214.97475 * 7 5 4 39 39 H 1.08998 * 117.50008 * 359.97186 * 7 5 4 40 40 H 1.08996 * 109.47256 * 306.04107 * 8 2 1 41 41 H 1.09010 * 109.46669 * 186.04595 * 8 2 1 42 42 H 1.08996 * 109.49958 * 305.38844 * 11 9 8 43 43 H 1.09004 * 109.49365 * 65.48620 * 11 9 8 44 44 H 1.08998 * 109.45966 * 181.38781 * 12 11 9 45 45 H 1.08999 * 109.46229 * 301.34464 * 12 11 9 46 46 H 1.09001 * 109.49812 * 178.68498 * 13 12 11 47 47 H 1.08997 * 109.52777 * 58.59663 * 13 12 11 48 48 H 1.08990 * 109.58727 * 294.85024 * 14 13 12 49 49 H 1.09002 * 109.58329 * 174.42197 * 14 13 12 50 50 H 1.08998 * 109.47326 * 300.00462 * 18 16 15 51 51 H 1.09005 * 109.46854 * 60.00429 * 18 16 15 52 52 H 0.96994 * 120.00488 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1805 3.4855 -1.3186 6 6 1.1680 4.6314 -1.3731 7 6 2.0204 4.3035 -2.6016 8 6 1.9953 -0.7660 1.1377 9 6 1.6313 -2.2426 0.9705 10 1 0.5640 -2.3353 0.7700 11 6 1.9814 -3.0061 2.2517 12 6 1.7421 -4.5015 2.0311 13 6 2.6495 -5.0045 0.9059 14 6 2.3069 -4.2637 -0.3905 15 7 2.3942 -2.8175 -0.1459 16 6 3.1595 -2.0333 -0.9305 17 8 3.3095 -0.8618 -0.6549 18 6 3.8289 -2.6121 -2.1503 19 16 4.7777 -1.3186 -2.9888 20 6 5.4334 -2.2451 -4.3365 21 1 5.1983 -3.2946 -4.4355 22 6 6.2530 -1.6265 -5.2703 23 7 6.7433 -2.3187 -6.2769 24 14 6.6616 0.1881 -5.0979 25 1 7.8929 0.3430 -4.2824 26 1 6.8819 0.7760 -6.4437 27 1 5.5345 0.8880 -4.4306 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 1.5611 1.9273 0.8309 32 1 3.0798 1.3443 0.1082 33 1 2.0659 1.5013 -2.1492 34 1 0.5473 2.0844 -1.4266 35 1 3.0858 3.6413 -0.7321 36 1 0.1110 4.3677 -1.4083 37 1 1.4076 5.5411 -0.8227 38 1 2.8202 4.9978 -2.8589 39 1 1.5244 3.8242 -3.4456 40 1 1.5610 -0.3872 2.0628 41 1 3.0797 -0.6611 1.1757 42 1 3.0292 -2.8380 2.5005 43 1 1.3519 -2.6535 3.0687 44 1 1.9670 -5.0445 2.9490 45 1 0.6998 -4.6661 1.7581 46 1 2.4954 -6.0743 0.7651 47 1 3.6911 -4.8181 1.1671 48 1 1.2947 -4.5212 -0.7020 49 1 3.0144 -4.5457 -1.1703 50 1 4.4989 -3.4175 -1.8494 51 1 3.0713 -3.0041 -2.8289 52 1 7.3158 -1.8863 -6.9297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264738302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = 20.276808 kcal Electronic energy + Delta-G solvation = -29181.902475 eV Core-core repulsion = 25502.572356 eV Total energy + Delta-G solvation = -3679.330119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.33733 -37.92451 -36.98569 -36.48390 -32.83778 -32.37791 -32.31043 -29.80633 -28.95436 -27.13305 -25.60892 -25.42296 -24.16785 -22.36354 -22.11001 -21.17947 -20.51305 -20.16695 -18.87779 -17.47417 -16.59507 -16.01346 -15.62045 -15.53498 -15.03927 -14.99434 -14.88422 -14.49517 -14.13635 -14.07730 -13.74201 -13.58444 -13.27844 -13.21014 -13.01508 -12.73837 -12.59477 -12.20802 -11.98001 -11.89185 -11.81601 -11.50197 -11.35791 -11.21755 -11.17308 -11.07902 -10.98829 -10.93422 -10.73458 -10.66438 -10.61469 -10.46845 -9.99816 -9.79081 -9.67658 -8.94408 -8.54505 -8.37455 -8.28401 -7.74982 -6.80092 -6.23090 -3.92149 2.87176 3.27322 3.32904 3.36955 3.54771 3.70728 3.89314 4.11804 4.38294 4.58129 4.68636 4.76442 4.86435 4.87586 5.00876 5.03033 5.04240 5.11867 5.16300 5.18990 5.29955 5.34255 5.39737 5.44051 5.53471 5.57832 5.63064 5.63560 5.67547 5.72079 5.74276 5.83248 5.83754 5.87205 5.88945 5.90873 5.93984 5.97077 6.06877 6.12374 6.15274 6.16246 6.26051 6.31933 6.52455 6.64464 6.84128 7.42100 7.48571 7.80346 8.00177 8.47933 8.86318 9.23825 10.86456 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007010 B = 0.005316 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3993.256246 B = 5265.523619 C = 8852.359437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.503 5.503 3 C 0.080 3.920 4 C -0.083 4.083 5 C -0.143 4.143 6 C -0.187 4.187 7 C -0.180 4.180 8 C 0.069 3.931 9 C 0.155 3.845 10 H 0.066 0.934 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.136 4.136 14 C 0.110 3.890 15 N -0.613 5.613 16 C 0.530 3.470 17 O -0.472 6.472 18 C -0.119 4.119 19 S -0.138 6.138 20 C -0.519 4.519 21 H 0.085 0.915 22 C 0.095 3.905 23 N -0.884 5.884 24 Si 0.856 3.144 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.234 1.234 28 H 0.013 0.987 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.015 0.985 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.016 0.984 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.790 1.658 17.202 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.227 5.227 3 C -0.047 4.047 4 C -0.121 4.121 5 C -0.162 4.162 6 C -0.224 4.224 7 C -0.217 4.217 8 C -0.059 4.059 9 C 0.051 3.949 10 H 0.084 0.916 11 C -0.170 4.170 12 C -0.154 4.154 13 C -0.174 4.174 14 C -0.014 4.014 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.343 6.343 18 C -0.270 4.270 19 S 0.088 5.912 20 C -0.667 4.667 21 H 0.103 0.897 22 C -0.113 4.113 23 N -0.521 5.521 24 Si 0.681 3.319 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.157 1.157 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.034 0.966 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.107 0.893 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.281 3.192 16.995 21.803 hybrid contribution -0.208 -0.506 0.145 0.566 sum -13.489 2.686 17.140 21.976 Atomic orbital electron populations 1.22558 0.90065 1.01244 0.99684 1.62211 1.04607 1.13612 1.42252 1.21852 1.00744 0.86835 0.95304 1.21150 0.99420 0.92282 0.99223 1.22288 1.00272 0.92548 1.01082 1.23024 0.96922 0.99880 1.02603 1.22939 1.02835 1.03627 0.92264 1.22269 1.02630 0.91128 0.89856 1.21165 0.95120 0.92888 0.85727 0.91597 1.21952 1.02445 0.95459 0.97123 1.21473 0.99769 0.95535 0.98592 1.21931 1.00466 0.99700 0.95331 1.21660 1.01937 0.80260 0.97553 1.47869 1.48477 1.07311 1.31430 1.19978 0.78624 0.86261 0.83439 1.90693 1.57857 1.15451 1.70311 1.23332 1.02298 1.03642 0.97742 1.84656 1.61256 1.15041 1.30199 1.22365 1.34808 0.99173 1.10352 0.89667 1.24704 0.94223 0.98489 0.93887 1.69944 1.32417 1.36672 1.13028 0.86741 0.81285 0.85386 0.78483 1.19412 1.20177 1.15735 0.96827 0.91664 0.92160 0.96732 0.90033 0.89793 0.92756 0.88021 0.89253 0.89418 0.89074 0.88775 0.96573 0.88142 0.91329 0.91317 0.91900 0.91986 0.90944 0.91362 0.91965 0.89401 0.89488 0.89293 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.14 60.07 0.55 0.70 16 2 N -0.50 -7.16 2.54 -242.91 -0.62 -7.77 16 3 C 0.08 1.15 4.23 -3.82 -0.02 1.13 16 4 C -0.08 -1.18 5.43 -26.73 -0.15 -1.33 16 5 C -0.14 -1.86 5.73 -90.62 -0.52 -2.38 16 6 C -0.19 -2.07 10.18 -26.69 -0.27 -2.35 16 7 C -0.18 -2.23 10.25 -26.69 -0.27 -2.50 16 8 C 0.07 0.90 3.62 -3.82 -0.01 0.89 16 9 C 0.16 1.80 2.91 -67.60 -0.20 1.60 16 10 H 0.07 0.75 6.19 -51.93 -0.32 0.42 16 11 C -0.13 -1.22 5.36 -26.61 -0.14 -1.36 16 12 C -0.12 -0.94 5.88 -26.69 -0.16 -1.10 16 13 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 14 C 0.11 1.20 6.32 -3.71 -0.02 1.17 16 15 N -0.61 -8.22 2.97 -165.22 -0.49 -8.71 16 16 C 0.53 9.18 7.40 -10.99 -0.08 9.10 16 17 O -0.47 -8.93 8.61 5.55 0.05 -8.89 16 18 C -0.12 -2.34 4.58 36.00 0.16 -2.17 16 19 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 20 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 24 Si 0.86 21.89 27.74 -169.99 -4.72 17.18 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.23 -5.92 6.74 56.52 0.38 -5.54 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.80 6.30 -51.93 -0.33 0.47 16 30 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 31 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 32 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.05 0.72 6.21 -51.93 -0.32 0.40 16 35 H 0.10 1.33 8.08 -51.93 -0.42 0.91 16 36 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.19 8.11 -51.93 -0.42 -0.23 16 41 H 0.10 1.55 6.10 -51.92 -0.32 1.23 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.09 1.02 5.97 -51.93 -0.31 0.71 16 50 H 0.09 1.63 7.44 -51.92 -0.39 1.24 16 51 H 0.09 1.71 8.13 -51.91 -0.42 1.28 16 52 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 404.18 15.07 6.09 6.09 Total: -1.00 -31.41 404.18 -11.41 -42.82 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -9.44 Total: 2.81 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.07 Total: -11.98 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.33 Total: -42.60 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.05 Total: -8.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.41 -11.41 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264738302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.095 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds