Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00310 * 2 1 4 4 C 1.53005 * 109.46736 * 293.95229 * 3 2 1 5 5 C 1.52998 * 109.46859 * 180.02562 * 4 3 2 6 6 C 1.53009 * 117.49735 * 243.74545 * 5 4 3 7 7 C 1.52999 * 117.49704 * 175.08785 * 5 4 3 8 8 C 1.46903 * 110.99460 * 123.95174 * 2 1 3 9 9 C 1.53000 * 109.47329 * 66.04786 * 8 2 1 10 10 H 1.08998 * 109.58232 * 309.14039 * 9 8 2 11 11 C 1.53193 * 109.58583 * 188.85932 * 9 8 2 12 12 C 1.53040 * 109.31031 * 185.43229 * 11 9 8 13 13 C 1.53041 * 109.53828 * 61.37005 * 12 11 9 14 14 C 1.53200 * 109.30973 * 298.62971 * 13 12 11 15 15 N 1.46928 * 109.70350 * 69.50144 * 9 8 2 16 16 C 1.34773 * 120.63185 * 353.48541 * 15 9 8 17 17 O 1.21285 * 119.99877 * 5.94304 * 16 15 9 18 18 C 1.50696 * 120.00125 * 185.94320 * 16 15 9 19 19 S 1.81006 * 109.47290 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99790 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00325 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99646 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00118 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00211 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47172 * 89.99755 * 24 22 20 26 26 H 1.48500 * 109.47132 * 210.00240 * 24 22 20 27 27 H 1.48502 * 109.46800 * 329.99692 * 24 22 20 28 28 H 1.08997 * 109.47235 * 296.05039 * 1 2 3 29 29 H 1.09002 * 109.46911 * 56.05034 * 1 2 3 30 30 H 1.09001 * 109.47374 * 176.04710 * 1 2 3 31 31 H 1.09001 * 109.46924 * 53.94709 * 3 2 1 32 32 H 1.08997 * 109.46999 * 173.95348 * 3 2 1 33 33 H 1.08999 * 109.46889 * 300.00209 * 4 3 2 34 34 H 1.09002 * 109.47241 * 59.99784 * 4 3 2 35 35 H 1.08996 * 115.55213 * 29.41389 * 5 4 3 36 36 H 1.09001 * 117.49270 * 0.02562 * 6 5 4 37 37 H 1.08993 * 117.49828 * 145.01752 * 6 5 4 38 38 H 1.08999 * 117.49937 * 214.97475 * 7 5 4 39 39 H 1.08998 * 117.50008 * 359.97186 * 7 5 4 40 40 H 1.08996 * 109.47256 * 306.04107 * 8 2 1 41 41 H 1.09010 * 109.46669 * 186.04595 * 8 2 1 42 42 H 1.08996 * 109.49958 * 305.38844 * 11 9 8 43 43 H 1.09004 * 109.49365 * 65.48620 * 11 9 8 44 44 H 1.08998 * 109.45966 * 181.38781 * 12 11 9 45 45 H 1.08999 * 109.46229 * 301.34464 * 12 11 9 46 46 H 1.09001 * 109.49812 * 178.68498 * 13 12 11 47 47 H 1.08997 * 109.52777 * 58.59663 * 13 12 11 48 48 H 1.08990 * 109.58727 * 294.85024 * 14 13 12 49 49 H 1.09002 * 109.58329 * 174.42197 * 14 13 12 50 50 H 1.08998 * 109.47326 * 300.00462 * 18 16 15 51 51 H 1.09005 * 109.46854 * 60.00429 * 18 16 15 52 52 H 0.96994 * 120.00488 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1805 3.4855 -1.3186 6 6 1.1680 4.6314 -1.3731 7 6 2.0204 4.3035 -2.6016 8 6 1.9953 -0.7660 1.1377 9 6 1.6313 -2.2426 0.9705 10 1 0.5640 -2.3353 0.7700 11 6 1.9814 -3.0061 2.2517 12 6 1.7421 -4.5015 2.0311 13 6 2.6495 -5.0045 0.9059 14 6 2.3069 -4.2637 -0.3905 15 7 2.3942 -2.8175 -0.1459 16 6 3.1595 -2.0333 -0.9305 17 8 3.3095 -0.8618 -0.6549 18 6 3.8289 -2.6121 -2.1503 19 16 4.7777 -1.3186 -2.9888 20 6 5.4334 -2.2451 -4.3365 21 1 5.1983 -3.2946 -4.4355 22 6 6.2530 -1.6265 -5.2703 23 7 6.7433 -2.3187 -6.2769 24 14 6.6616 0.1881 -5.0979 25 1 7.8929 0.3430 -4.2824 26 1 6.8819 0.7760 -6.4437 27 1 5.5345 0.8880 -4.4306 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 1.5611 1.9273 0.8309 32 1 3.0798 1.3443 0.1082 33 1 2.0659 1.5013 -2.1492 34 1 0.5473 2.0844 -1.4266 35 1 3.0858 3.6413 -0.7321 36 1 0.1110 4.3677 -1.4083 37 1 1.4076 5.5411 -0.8227 38 1 2.8202 4.9978 -2.8589 39 1 1.5244 3.8242 -3.4456 40 1 1.5610 -0.3872 2.0628 41 1 3.0797 -0.6611 1.1757 42 1 3.0292 -2.8380 2.5005 43 1 1.3519 -2.6535 3.0687 44 1 1.9670 -5.0445 2.9490 45 1 0.6998 -4.6661 1.7581 46 1 2.4954 -6.0743 0.7651 47 1 3.6911 -4.8181 1.1671 48 1 1.2947 -4.5212 -0.7020 49 1 3.0144 -4.5457 -1.1703 50 1 4.4989 -3.4175 -1.8494 51 1 3.0713 -3.0041 -2.8289 52 1 7.3158 -1.8863 -6.9297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264738302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = 3.958725 kcal Electronic energy + Delta-G solvation = -29182.610080 eV Core-core repulsion = 25502.572356 eV Total energy + Delta-G solvation = -3680.037724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45956 -38.96481 -38.10667 -37.49243 -34.65087 -33.88814 -33.25919 -30.84981 -30.36558 -28.16183 -27.79067 -26.48728 -25.09491 -23.29091 -23.10029 -22.22757 -21.42584 -21.22651 -20.29891 -19.29976 -17.84605 -17.16265 -17.01926 -16.71548 -16.56656 -16.20886 -16.05279 -15.67926 -15.33405 -15.11808 -14.93127 -14.90846 -14.60348 -14.37173 -14.24402 -14.15879 -13.60257 -13.38153 -13.28755 -13.07974 -13.01357 -12.89699 -12.80275 -12.53885 -12.45796 -12.36032 -12.19186 -11.97084 -11.84463 -11.76044 -11.73619 -11.50654 -11.45829 -11.15224 -10.99139 -10.71911 -10.42724 -9.86544 -9.36928 -8.89995 -8.79576 -8.49701 -6.16875 1.04911 1.30853 1.48723 1.60706 1.92920 2.25300 2.28765 2.76794 2.88796 2.91385 3.11183 3.65020 3.85969 3.92381 3.98768 4.03409 4.06873 4.08404 4.18010 4.26642 4.29770 4.31647 4.33254 4.40167 4.50742 4.51080 4.57747 4.68534 4.70931 4.74993 4.77187 4.77960 4.78212 4.90750 5.00204 5.01059 5.08007 5.11040 5.12830 5.16462 5.22786 5.24854 5.27259 5.39137 5.46404 5.50873 5.72459 5.82613 6.12772 6.36276 6.48550 6.58542 6.96143 7.54237 8.63240 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007010 B = 0.005316 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3993.256246 B = 5265.523619 C = 8852.359437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.525 5.525 3 C 0.090 3.910 4 C -0.072 4.072 5 C -0.162 4.162 6 C -0.162 4.162 7 C -0.190 4.190 8 C 0.073 3.927 9 C 0.155 3.845 10 H 0.079 0.921 11 C -0.125 4.125 12 C -0.112 4.112 13 C -0.131 4.131 14 C 0.102 3.898 15 N -0.605 5.605 16 C 0.528 3.472 17 O -0.492 6.492 18 C -0.106 4.106 19 S -0.158 6.158 20 C -0.530 4.530 21 H 0.055 0.945 22 C 0.046 3.954 23 N -0.921 5.921 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.261 1.261 27 H -0.235 1.235 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 2.014 19.451 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.249 5.249 3 C -0.038 4.038 4 C -0.109 4.109 5 C -0.181 4.181 6 C -0.199 4.199 7 C -0.227 4.227 8 C -0.054 4.054 9 C 0.052 3.948 10 H 0.097 0.903 11 C -0.164 4.164 12 C -0.149 4.149 13 C -0.169 4.169 14 C -0.021 4.021 15 N -0.341 5.341 16 C 0.314 3.686 17 O -0.365 6.365 18 C -0.257 4.257 19 S 0.069 5.931 20 C -0.677 4.677 21 H 0.073 0.927 22 C -0.159 4.159 23 N -0.559 5.559 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.186 1.186 27 H -0.159 1.159 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.380 3.511 19.263 24.899 hybrid contribution 0.364 -0.744 -0.496 0.966 sum -15.016 2.767 18.767 24.194 Atomic orbital electron populations 1.22524 0.88583 1.01767 1.00172 1.62140 1.06009 1.13527 1.43257 1.21680 0.99085 0.87422 0.95619 1.20988 0.99662 0.92612 0.97675 1.22262 1.01253 0.92534 1.02053 1.23086 0.96812 0.99159 1.00850 1.23003 1.03687 1.03755 0.92292 1.22166 1.00904 0.92147 0.90205 1.21351 0.95253 0.92174 0.86007 0.90311 1.21931 1.02072 0.96182 0.96227 1.21472 1.00150 0.94480 0.98814 1.21906 0.99963 1.00615 0.94459 1.21888 1.02721 0.78791 0.98651 1.47833 1.47230 1.08106 1.30963 1.19597 0.79428 0.86280 0.83318 1.90724 1.58850 1.16233 1.70707 1.23315 1.01851 1.01850 0.98659 1.84522 1.62214 1.17174 1.29237 1.22544 1.34949 0.98345 1.11908 0.92670 1.25545 0.94117 1.02624 0.93588 1.70025 1.33328 1.38589 1.13960 0.85860 0.81007 0.80364 0.79096 1.18817 1.18588 1.15859 0.95412 0.92120 0.91462 0.95398 0.92843 0.93878 0.91706 0.88507 0.88275 0.87702 0.88518 0.89410 0.94879 0.91043 0.92655 0.89216 0.90298 0.90709 0.88919 0.92719 0.90158 0.90613 0.88830 0.89041 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.14 127.69 1.17 1.56 16 2 N -0.52 -14.61 2.54 -922.42 -2.34 -16.95 16 3 C 0.09 2.57 4.23 86.30 0.37 2.94 16 4 C -0.07 -2.07 5.43 30.60 0.17 -1.90 16 5 C -0.16 -4.19 5.73 -10.79 -0.06 -4.25 16 6 C -0.16 -3.28 10.18 30.62 0.31 -2.97 16 7 C -0.19 -4.61 10.25 30.62 0.31 -4.30 16 8 C 0.07 1.84 3.62 86.30 0.31 2.15 16 9 C 0.16 3.26 2.91 44.97 0.13 3.39 16 10 H 0.08 1.52 6.19 -2.39 -0.01 1.50 16 11 C -0.13 -1.97 5.36 30.67 0.16 -1.80 16 12 C -0.11 -1.41 5.88 30.62 0.18 -1.23 16 13 C -0.13 -2.02 6.08 30.67 0.19 -1.84 16 14 C 0.10 2.05 6.32 86.36 0.55 2.60 16 15 N -0.60 -15.51 2.97 -795.02 -2.36 -17.87 16 16 C 0.53 18.37 7.40 87.66 0.65 19.02 16 17 O -0.49 -19.03 8.61 -3.04 -0.03 -19.06 16 18 C -0.11 -4.21 4.58 71.23 0.33 -3.89 16 19 S -0.16 -8.08 18.55 -56.49 -1.05 -9.13 16 20 C -0.53 -31.60 10.04 67.95 0.68 -30.92 16 21 H 0.06 3.51 8.03 -2.91 -0.02 3.48 16 22 C 0.05 2.77 5.50 84.86 0.47 3.23 16 23 N -0.92 -57.21 13.97 21.65 0.30 -56.91 16 24 Si 0.91 45.95 27.74 68.60 1.90 47.85 16 25 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.23 -11.76 6.74 99.48 0.67 -11.09 16 28 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 1.39 6.30 -2.39 -0.02 1.38 16 30 H 0.07 1.38 6.30 -2.39 -0.02 1.37 16 31 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 32 H 0.05 1.82 7.18 -2.39 -0.02 1.80 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.69 6.21 -2.39 -0.01 1.67 16 35 H 0.10 2.57 8.08 -2.39 -0.02 2.55 16 36 H 0.10 1.83 8.03 -2.39 -0.02 1.81 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.03 0.72 8.11 -2.39 -0.02 0.70 16 41 H 0.07 2.23 6.10 -2.38 -0.01 2.21 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.08 1.71 5.97 -2.39 -0.01 1.69 16 50 H 0.09 3.58 7.44 -2.40 -0.02 3.56 16 51 H 0.09 3.58 8.13 -2.39 -0.02 3.56 16 52 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -70.05 404.18 3.17 -66.88 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.84 Total: 23.40 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 5.91 Total: -18.21 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.40 Total: -91.73 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.03 Total: -19.06 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.05 Total: -9.13 kcal Total: -70.05 3.17 -66.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264738302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.842 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds