Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46929 * 2 1 4 4 N 1.46498 * 109.47646 * 239.99530 * 2 1 3 5 5 C 1.34782 * 119.99756 * 84.99619 * 4 2 1 6 6 O 1.21276 * 120.00001 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99756 * 180.02562 * 5 4 2 8 8 S 1.80996 * 109.46924 * 180.02562 * 7 5 4 9 9 C 1.76199 * 99.99844 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.38808 * 119.99877 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99881 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99879 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46942 * 89.99928 * 13 11 9 15 15 H 1.48495 * 109.47040 * 210.00148 * 13 11 9 16 16 H 1.48507 * 109.47065 * 330.00042 * 13 11 9 17 17 C 1.53003 * 109.46900 * 119.99742 * 2 1 3 18 18 H 1.09005 * 109.53250 * 180.10269 * 17 2 1 19 19 C 1.53115 * 109.50529 * 59.99937 * 17 2 1 20 20 C 1.53119 * 109.16319 * 182.40422 * 19 17 2 21 21 C 1.53038 * 109.27506 * 57.65615 * 20 19 17 22 22 N 1.46851 * 109.52493 * 300.81856 * 21 20 19 23 23 C 1.46901 * 111.00103 * 185.84066 * 22 21 20 24 24 C 1.52997 * 109.46952 * 66.04831 * 23 22 21 25 25 C 1.53784 * 113.61330 * 174.99902 * 24 23 22 26 26 C 1.53787 * 87.07923 * 139.97966 * 25 24 23 27 27 C 1.53778 * 87.08035 * 334.56830 * 26 25 24 28 28 C 1.46853 * 111.19523 * 61.74518 * 22 21 20 29 29 H 1.09004 * 109.46731 * 60.00676 * 1 2 3 30 30 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47272 * 300.00582 * 1 2 3 32 32 H 0.96993 * 120.00104 * 265.00255 * 4 2 1 33 33 H 1.09004 * 109.47083 * 300.00372 * 7 5 4 34 34 H 1.08994 * 109.47353 * 60.00118 * 7 5 4 35 35 H 0.97004 * 119.99889 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.51826 * 62.50005 * 19 17 2 37 37 H 1.08995 * 109.57244 * 302.34304 * 19 17 2 38 38 H 1.09002 * 109.50303 * 297.71877 * 20 19 17 39 39 H 1.08989 * 109.50589 * 177.59584 * 20 19 17 40 40 H 1.09002 * 109.45969 * 180.80783 * 21 20 19 41 41 H 1.09001 * 109.46288 * 60.83680 * 21 20 19 42 42 H 1.09004 * 109.47068 * 306.04909 * 23 22 21 43 43 H 1.08995 * 109.46816 * 186.04792 * 23 22 21 44 44 H 1.09000 * 112.90903 * 43.74530 * 24 23 22 45 45 H 1.09004 * 113.61451 * 25.43452 * 25 24 23 46 46 H 1.08994 * 113.61477 * 254.52754 * 25 24 23 47 47 H 1.08998 * 113.61103 * 89.12089 * 26 25 24 48 48 H 1.08999 * 113.61167 * 220.01551 * 26 25 24 49 49 H 1.08999 * 113.61111 * 139.98327 * 27 26 25 50 50 H 1.09004 * 113.61682 * 270.87724 * 27 26 25 51 51 H 1.08999 * 109.46106 * 58.27061 * 28 22 21 52 52 H 1.08997 * 109.45754 * 178.24289 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6491 -0.7290 -3.5876 8 16 2.7108 0.4341 -4.9730 9 6 3.3125 -0.6315 -6.2406 10 1 3.5213 -1.6681 -6.0207 11 6 3.5193 -0.1385 -7.5216 12 7 3.2653 1.1249 -7.7895 13 14 4.1579 -1.2681 -8.8653 14 1 3.0119 -1.9044 -9.5632 15 1 4.9540 -0.4785 -9.8389 16 1 5.0156 -2.3196 -8.2618 17 6 2.0400 -0.7212 1.2493 18 1 3.1300 -0.7202 1.2513 19 6 1.5300 -2.1649 1.2502 20 6 1.9945 -2.8613 2.5323 21 6 1.4820 -2.0812 3.7450 22 7 1.9980 -0.7071 3.6985 23 6 1.6404 0.0310 4.9172 24 6 2.3597 -0.5874 6.1176 25 6 2.1486 0.1880 7.4288 26 6 2.0355 -1.1779 8.1264 27 6 1.5860 -1.7454 6.7697 28 6 1.5261 -0.0031 2.4993 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2492 -1.6318 -1.1524 33 1 3.6482 -1.1215 -3.3984 34 1 1.9763 -1.5508 -3.8324 35 1 3.4094 1.4693 -8.6848 36 1 1.9291 -2.6927 0.3839 37 1 0.4408 -2.1675 1.2083 38 1 3.0838 -2.8940 2.5545 39 1 1.5987 -3.8765 2.5589 40 1 1.8230 -2.5664 4.6595 41 1 0.3922 -2.0607 3.7296 42 1 0.5627 -0.0233 5.0719 43 1 1.9402 1.0736 4.8116 44 1 3.4042 -0.8214 5.9120 45 1 1.2252 0.7668 7.4499 46 1 3.0189 0.7660 7.7391 47 1 2.9914 -1.5731 8.4700 48 1 1.2614 -1.2138 8.8929 49 1 2.0021 -2.7282 6.5481 50 1 0.5088 -1.6952 6.6107 51 1 0.4363 0.0077 2.4897 52 1 1.8993 1.0210 2.5091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266890766.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -31.542031 kcal Electronic energy + Delta-G solvation = -27356.631158 eV Core-core repulsion = 23675.054005 eV Total energy + Delta-G solvation = -3681.577153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38709 -39.41983 -38.34349 -35.70768 -33.16016 -32.41367 -31.99657 -29.58545 -28.36396 -28.21472 -26.10625 -25.47850 -24.79522 -23.93564 -22.62485 -21.11045 -20.26706 -19.82865 -19.16630 -17.84215 -16.81756 -16.29912 -16.17241 -15.47157 -15.37798 -15.10955 -14.96215 -14.79146 -14.72216 -14.30424 -14.03050 -13.70519 -13.49842 -13.37013 -13.03140 -12.90140 -12.78565 -12.62990 -12.41180 -12.37350 -11.97306 -11.91161 -11.67237 -11.53528 -11.15534 -11.05896 -11.04954 -11.00454 -10.94607 -10.75614 -10.74576 -10.54643 -10.40864 -10.24241 -9.79138 -9.33388 -9.05453 -8.84124 -8.59540 -8.21259 -6.47807 -6.20138 -3.90324 3.04918 3.14726 3.23370 3.28660 3.32530 3.51178 3.79645 4.17711 4.22100 4.25914 4.33177 4.42981 4.49643 4.53017 4.61570 4.85881 4.94828 5.03451 5.07509 5.14885 5.15014 5.18486 5.23934 5.25434 5.29242 5.30104 5.36426 5.37407 5.39482 5.48003 5.49309 5.53160 5.55625 5.65724 5.69484 5.71425 5.73505 5.83339 5.85345 5.90929 5.92446 6.05860 6.09551 6.12899 6.17081 6.33883 6.71273 6.81086 6.82295 7.61129 7.77874 8.36795 8.67617 9.25196 10.87288 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.001729 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.999573 B =16188.069915 C =16516.178312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.518 6.518 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.089 4.089 18 H 0.085 0.915 19 C -0.121 4.121 20 C -0.117 4.117 21 C 0.051 3.949 22 N -0.536 5.536 23 C 0.065 3.935 24 C -0.104 4.104 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.140 4.140 28 C 0.062 3.938 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.040 0.960 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -7.925 31.191 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.106 0.894 4 N -0.388 5.388 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.109 4.109 18 H 0.104 0.896 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.077 4.077 22 N -0.260 5.260 23 C -0.063 4.063 24 C -0.123 4.123 25 C -0.175 4.175 26 C -0.181 4.181 27 C -0.178 4.178 28 C -0.066 4.066 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.231 0.769 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.058 0.942 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.431 -5.824 30.932 31.786 hybrid contribution -0.070 -2.509 -0.792 2.633 sum -4.501 -8.334 30.140 31.593 Atomic orbital electron populations 1.22301 0.95761 1.02022 1.02455 1.20792 0.93867 0.97384 0.83570 0.89416 1.46113 1.69294 1.13897 1.09477 1.20294 0.76805 0.87224 0.83792 1.90691 1.48363 1.15766 1.84430 1.23537 1.03634 1.04824 0.98455 1.85384 1.86346 1.12880 0.98744 1.22877 1.50960 0.98147 0.96409 0.90952 1.24989 0.95115 0.95519 0.97945 1.70019 1.45628 1.13184 1.21464 0.86173 0.78824 0.79970 0.80561 1.20288 1.20751 1.19707 1.21411 1.01627 0.94866 0.92952 0.89624 1.21719 1.01105 0.95187 0.97807 1.21588 1.01822 0.98143 0.93940 1.22243 0.96848 0.89304 0.99286 1.61886 1.60116 1.02278 1.01700 1.22102 0.97180 0.97885 0.89096 1.22574 1.00580 0.96361 0.92758 1.22919 1.02048 0.96519 0.96003 1.22805 1.01567 0.96969 0.96716 1.23085 1.00085 0.98286 0.96297 1.22121 0.97776 0.97697 0.89025 0.91760 0.92385 0.91990 0.76929 0.89292 0.89331 0.92205 0.91714 0.91524 0.91065 0.91609 0.90092 0.95260 0.94867 0.90639 0.88332 0.90257 0.91395 0.90216 0.91647 0.91432 0.90439 0.94212 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.78 37.16 0.33 -1.54 16 2 C 0.15 1.76 2.41 -67.93 -0.16 1.60 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 4 N -0.73 -9.87 5.00 -53.80 -0.27 -10.14 16 5 C 0.53 10.00 7.81 -10.98 -0.09 9.91 16 6 O -0.52 -11.79 15.52 5.56 0.09 -11.71 16 7 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 8 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 9 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 13 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.09 -0.82 2.34 -90.54 -0.21 -1.03 16 18 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.12 -0.96 4.77 -26.61 -0.13 -1.08 16 20 C -0.12 -0.84 6.09 -26.65 -0.16 -1.01 16 21 C 0.05 0.37 5.06 -3.83 -0.02 0.35 16 22 N -0.54 -4.27 4.66 -234.66 -1.09 -5.36 16 23 C 0.07 0.45 4.87 -3.82 -0.02 0.43 16 24 C -0.10 -0.64 3.46 -89.81 -0.31 -0.95 16 25 C -0.14 -0.74 7.64 -25.91 -0.20 -0.94 16 26 C -0.14 -0.73 8.08 -25.92 -0.21 -0.94 16 27 C -0.14 -0.77 5.90 -25.92 -0.15 -0.92 16 28 C 0.06 0.53 4.41 -3.83 -0.02 0.51 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.59 6.38 -51.93 -0.33 0.25 16 31 H 0.06 0.59 6.41 -51.93 -0.33 0.26 16 32 H 0.40 4.31 6.91 -40.82 -0.28 4.03 16 33 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 34 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.50 6.60 -51.93 -0.34 0.16 16 37 H 0.07 0.54 6.32 -51.93 -0.33 0.21 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.41 8.14 -51.94 -0.42 -0.01 16 40 H 0.08 0.54 4.97 -51.93 -0.26 0.28 16 41 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.03 0.23 7.82 -51.93 -0.41 -0.17 16 43 H 0.08 0.53 7.98 -51.93 -0.41 0.12 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.37 7.24 -51.93 -0.38 -0.01 16 50 H 0.08 0.43 7.90 -51.93 -0.41 0.02 16 51 H 0.04 0.34 6.38 -51.93 -0.33 0.00 16 52 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 LS Contribution 406.91 15.07 6.13 6.13 Total: -1.00 -33.24 406.91 -11.81 -45.06 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -9.24 Total: 0.55 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.93 Total: -11.59 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.63 Total: -41.08 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.24 -11.81 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266890766.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.514 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds