Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46929 * 2 1 4 4 N 1.46498 * 109.47646 * 239.99530 * 2 1 3 5 5 C 1.34782 * 119.99756 * 84.99619 * 4 2 1 6 6 O 1.21276 * 120.00001 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99756 * 180.02562 * 5 4 2 8 8 S 1.80996 * 109.46924 * 180.02562 * 7 5 4 9 9 C 1.76199 * 99.99844 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.38808 * 119.99877 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99881 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99879 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46942 * 89.99928 * 13 11 9 15 15 H 1.48495 * 109.47040 * 210.00148 * 13 11 9 16 16 H 1.48507 * 109.47065 * 330.00042 * 13 11 9 17 17 C 1.53003 * 109.46900 * 119.99742 * 2 1 3 18 18 H 1.09005 * 109.53250 * 180.10269 * 17 2 1 19 19 C 1.53115 * 109.50529 * 59.99937 * 17 2 1 20 20 C 1.53119 * 109.16319 * 182.40422 * 19 17 2 21 21 C 1.53038 * 109.27506 * 57.65615 * 20 19 17 22 22 N 1.46851 * 109.52493 * 300.81856 * 21 20 19 23 23 C 1.46901 * 111.00103 * 185.84066 * 22 21 20 24 24 C 1.52997 * 109.46952 * 66.04831 * 23 22 21 25 25 C 1.53784 * 113.61330 * 174.99902 * 24 23 22 26 26 C 1.53787 * 87.07923 * 139.97966 * 25 24 23 27 27 C 1.53778 * 87.08035 * 334.56830 * 26 25 24 28 28 C 1.46853 * 111.19523 * 61.74518 * 22 21 20 29 29 H 1.09004 * 109.46731 * 60.00676 * 1 2 3 30 30 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47272 * 300.00582 * 1 2 3 32 32 H 0.96993 * 120.00104 * 265.00255 * 4 2 1 33 33 H 1.09004 * 109.47083 * 300.00372 * 7 5 4 34 34 H 1.08994 * 109.47353 * 60.00118 * 7 5 4 35 35 H 0.97004 * 119.99889 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.51826 * 62.50005 * 19 17 2 37 37 H 1.08995 * 109.57244 * 302.34304 * 19 17 2 38 38 H 1.09002 * 109.50303 * 297.71877 * 20 19 17 39 39 H 1.08989 * 109.50589 * 177.59584 * 20 19 17 40 40 H 1.09002 * 109.45969 * 180.80783 * 21 20 19 41 41 H 1.09001 * 109.46288 * 60.83680 * 21 20 19 42 42 H 1.09004 * 109.47068 * 306.04909 * 23 22 21 43 43 H 1.08995 * 109.46816 * 186.04792 * 23 22 21 44 44 H 1.09000 * 112.90903 * 43.74530 * 24 23 22 45 45 H 1.09004 * 113.61451 * 25.43452 * 25 24 23 46 46 H 1.08994 * 113.61477 * 254.52754 * 25 24 23 47 47 H 1.08998 * 113.61103 * 89.12089 * 26 25 24 48 48 H 1.08999 * 113.61167 * 220.01551 * 26 25 24 49 49 H 1.08999 * 113.61111 * 139.98327 * 27 26 25 50 50 H 1.09004 * 113.61682 * 270.87724 * 27 26 25 51 51 H 1.08999 * 109.46106 * 58.27061 * 28 22 21 52 52 H 1.08997 * 109.45754 * 178.24289 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6491 -0.7290 -3.5876 8 16 2.7108 0.4341 -4.9730 9 6 3.3125 -0.6315 -6.2406 10 1 3.5213 -1.6681 -6.0207 11 6 3.5193 -0.1385 -7.5216 12 7 3.2653 1.1249 -7.7895 13 14 4.1579 -1.2681 -8.8653 14 1 3.0119 -1.9044 -9.5632 15 1 4.9540 -0.4785 -9.8389 16 1 5.0156 -2.3196 -8.2618 17 6 2.0400 -0.7212 1.2493 18 1 3.1300 -0.7202 1.2513 19 6 1.5300 -2.1649 1.2502 20 6 1.9945 -2.8613 2.5323 21 6 1.4820 -2.0812 3.7450 22 7 1.9980 -0.7071 3.6985 23 6 1.6404 0.0310 4.9172 24 6 2.3597 -0.5874 6.1176 25 6 2.1486 0.1880 7.4288 26 6 2.0355 -1.1779 8.1264 27 6 1.5860 -1.7454 6.7697 28 6 1.5261 -0.0031 2.4993 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2492 -1.6318 -1.1524 33 1 3.6482 -1.1215 -3.3984 34 1 1.9763 -1.5508 -3.8324 35 1 3.4094 1.4693 -8.6848 36 1 1.9291 -2.6927 0.3839 37 1 0.4408 -2.1675 1.2083 38 1 3.0838 -2.8940 2.5545 39 1 1.5987 -3.8765 2.5589 40 1 1.8230 -2.5664 4.6595 41 1 0.3922 -2.0607 3.7296 42 1 0.5627 -0.0233 5.0719 43 1 1.9402 1.0736 4.8116 44 1 3.4042 -0.8214 5.9120 45 1 1.2252 0.7668 7.4499 46 1 3.0189 0.7660 7.7391 47 1 2.9914 -1.5731 8.4700 48 1 1.2614 -1.2138 8.8929 49 1 2.0021 -2.7282 6.5481 50 1 0.5088 -1.6952 6.6107 51 1 0.4363 0.0077 2.4897 52 1 1.8993 1.0210 2.5091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266890766.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -52.328490 kcal Electronic energy + Delta-G solvation = -27357.532526 eV Core-core repulsion = 23675.054005 eV Total energy + Delta-G solvation = -3682.478521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.25089 -40.37679 -39.17504 -36.70876 -34.58482 -33.99619 -33.01532 -30.77956 -29.42474 -28.89107 -27.65987 -26.56494 -25.48339 -24.69997 -23.25040 -21.97919 -21.44940 -20.41974 -19.96336 -19.72478 -17.92651 -17.50992 -17.01497 -16.87653 -16.46058 -16.21689 -15.94238 -15.81849 -15.69731 -15.58616 -14.91344 -14.74591 -14.54933 -14.32517 -14.19824 -14.10943 -13.59223 -13.34739 -13.25892 -13.16930 -13.14276 -12.97431 -12.88738 -12.78242 -12.58200 -12.38260 -12.18990 -11.92169 -11.74047 -11.60290 -11.50533 -11.35840 -11.14087 -11.12864 -10.99215 -10.95123 -10.77665 -10.27319 -10.10294 -9.20694 -8.66396 -8.34451 -6.12506 1.27262 1.42654 1.47285 1.57836 1.63449 2.25176 2.29333 2.93239 2.99684 3.32594 3.67651 3.70836 3.76355 3.85357 3.88640 3.92403 3.99259 4.03632 4.20028 4.27063 4.31859 4.33740 4.41357 4.48617 4.51032 4.52202 4.62538 4.64809 4.68339 4.77270 4.82036 4.87427 4.90221 4.91217 4.97857 5.04482 5.04965 5.08668 5.10033 5.15421 5.18466 5.30651 5.33090 5.40445 5.41998 5.52580 5.55270 5.65615 6.17919 6.20000 6.23145 6.52946 7.06789 7.27191 8.74796 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.001729 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.999573 B =16188.069915 C =16516.178312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.063 0.937 4 N -0.708 5.708 5 C 0.535 3.465 6 O -0.565 6.565 7 C -0.130 4.130 8 S -0.151 6.151 9 C -0.547 4.547 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.258 1.258 17 C -0.076 4.076 18 H 0.077 0.923 19 C -0.119 4.119 20 C -0.114 4.114 21 C 0.051 3.949 22 N -0.543 5.543 23 C 0.067 3.933 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.137 4.137 28 C 0.064 3.936 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.413 0.587 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.271 0.729 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.044 0.956 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -10.710 32.518 34.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.082 0.918 4 N -0.362 5.362 5 C 0.321 3.679 6 O -0.443 6.443 7 C -0.281 4.281 8 S 0.076 5.924 9 C -0.695 4.695 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.821 3.179 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.182 1.182 17 C -0.096 4.096 18 H 0.095 0.905 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.076 4.076 22 N -0.267 5.267 23 C -0.061 4.061 24 C -0.122 4.122 25 C -0.174 4.174 26 C -0.179 4.179 27 C -0.174 4.174 28 C -0.064 4.064 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.251 0.749 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.097 0.903 51 H 0.062 0.938 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.394 -8.656 32.313 33.739 hybrid contribution -0.103 -1.647 -1.050 1.956 sum -4.497 -10.303 31.263 33.223 Atomic orbital electron populations 1.22239 0.94874 1.02894 1.01848 1.20902 0.94472 0.96442 0.83729 0.91830 1.45884 1.67446 1.14502 1.08361 1.20053 0.76654 0.86582 0.84649 1.90682 1.50741 1.17735 1.85183 1.23382 1.05456 1.03204 0.96104 1.85570 1.86761 1.17289 1.02749 1.23217 1.50979 0.98463 0.96868 0.89918 1.26131 0.95055 0.97195 1.00738 1.70185 1.46879 1.15467 1.22240 0.84949 0.78433 0.77747 0.76821 1.19275 1.20287 1.18201 1.21266 1.00990 0.95646 0.91685 0.90456 1.21728 1.01314 0.94027 0.98618 1.21568 1.01469 0.98781 0.93309 1.22274 0.96858 0.88789 0.99693 1.61890 1.60390 1.02769 1.01698 1.22108 0.97353 0.97663 0.88978 1.22522 1.00005 0.97001 0.92705 1.22926 1.02195 0.96748 0.95540 1.22809 1.01851 0.96555 0.96683 1.23058 1.00007 0.98030 0.96290 1.22055 0.97901 0.97402 0.89065 0.94864 0.90700 0.90126 0.74942 0.87351 0.87278 0.91997 0.91158 0.91115 0.91660 0.90155 0.89426 0.95178 0.94671 0.91082 0.89300 0.89979 0.91408 0.89995 0.91158 0.91256 0.90315 0.93817 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.78 71.98 0.63 -2.79 16 2 C 0.15 3.41 2.41 44.99 0.11 3.52 16 3 H 0.06 1.81 7.58 -2.38 -0.02 1.79 16 4 N -0.71 -18.21 5.00 -442.52 -2.21 -20.42 16 5 C 0.53 20.02 7.81 87.66 0.68 20.71 16 6 O -0.57 -26.56 15.52 -3.02 -0.05 -26.61 16 7 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 8 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 9 C -0.55 -31.51 9.50 67.96 0.65 -30.87 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 11 C 0.01 0.78 5.49 84.86 0.47 1.24 16 12 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 13 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 17 C -0.08 -1.28 2.34 -10.74 -0.03 -1.31 16 18 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 19 C -0.12 -1.58 4.77 30.67 0.15 -1.43 16 20 C -0.11 -1.34 6.09 30.65 0.19 -1.15 16 21 C 0.05 0.63 5.06 86.33 0.44 1.06 16 22 N -0.54 -7.85 4.66 -896.33 -4.17 -12.02 16 23 C 0.07 0.85 4.87 86.30 0.42 1.27 16 24 C -0.10 -1.14 3.46 -10.27 -0.04 -1.18 16 25 C -0.14 -1.30 7.64 31.12 0.24 -1.06 16 26 C -0.14 -1.22 8.08 31.12 0.25 -0.97 16 27 C -0.14 -1.26 5.90 31.12 0.18 -1.08 16 28 C 0.06 1.01 4.41 86.33 0.38 1.39 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.34 6.38 -2.39 -0.02 1.33 16 31 H 0.08 1.42 6.41 -2.39 -0.02 1.40 16 32 H 0.41 7.96 6.91 -92.71 -0.64 7.32 16 33 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 34 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.07 0.86 6.60 -2.38 -0.02 0.85 16 37 H 0.07 0.92 6.32 -2.39 -0.02 0.90 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.97 4.97 -2.39 -0.01 0.96 16 41 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 42 H 0.04 0.44 7.82 -2.38 -0.02 0.42 16 43 H 0.07 0.95 7.98 -2.39 -0.02 0.94 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 0.74 8.10 -2.39 -0.02 0.72 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.07 0.62 7.24 -2.39 -0.02 0.60 16 50 H 0.08 0.72 7.90 -2.38 -0.02 0.70 16 51 H 0.04 0.66 6.38 -2.39 -0.02 0.64 16 52 H 0.07 1.20 8.01 -2.39 -0.02 1.18 16 Total: -1.00 -74.13 406.91 0.13 -74.00 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.25 Total: 22.38 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.16 Total: -17.44 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -6.10 Total: -88.51 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -74.13 0.13 -74.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266890766.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.668 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds