Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47475 * 2 1 4 4 N 1.46500 * 109.47065 * 240.00211 * 2 1 3 5 5 C 1.34781 * 120.00089 * 84.99880 * 4 2 1 6 6 O 1.21281 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00014 * 179.97438 * 5 4 2 8 8 S 1.80999 * 109.46955 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99716 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00599 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99817 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00012 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00128 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47183 * 89.99657 * 13 11 9 15 15 H 1.48495 * 109.47308 * 209.99895 * 13 11 9 16 16 H 1.48503 * 109.46968 * 330.00333 * 13 11 9 17 17 C 1.52998 * 109.47333 * 120.00300 * 2 1 3 18 18 H 1.08995 * 109.50370 * 59.92265 * 17 2 1 19 19 C 1.53120 * 109.50265 * 179.97438 * 17 2 1 20 20 C 1.53120 * 109.15835 * 177.63149 * 19 17 2 21 21 C 1.53041 * 109.28215 * 302.34563 * 20 19 17 22 22 N 1.46846 * 109.52003 * 59.17728 * 21 20 19 23 23 C 1.46901 * 110.99738 * 174.15981 * 22 21 20 24 24 C 1.53000 * 109.46769 * 66.05101 * 23 22 21 25 25 C 1.53783 * 113.61182 * 274.13299 * 24 23 22 26 26 C 1.53957 * 87.01875 * 220.05000 * 25 24 23 27 27 C 1.53778 * 87.11265 * 25.36563 * 26 25 24 28 28 C 1.46839 * 111.20112 * 298.26039 * 22 21 20 29 29 H 1.08995 * 109.46884 * 299.99938 * 1 2 3 30 30 H 1.09001 * 109.47349 * 60.00163 * 1 2 3 31 31 H 1.09006 * 109.46598 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99983 * 264.99769 * 4 2 1 33 33 H 1.08998 * 109.47246 * 300.00474 * 7 5 4 34 34 H 1.09003 * 109.47117 * 59.99885 * 7 5 4 35 35 H 0.97000 * 119.99909 * 180.02562 * 12 11 9 36 36 H 1.08994 * 109.52534 * 57.73227 * 19 17 2 37 37 H 1.08995 * 109.52402 * 297.53367 * 19 17 2 38 38 H 1.09001 * 109.50461 * 182.40170 * 20 19 17 39 39 H 1.09002 * 109.50357 * 62.28890 * 20 19 17 40 40 H 1.09002 * 109.45916 * 299.16269 * 21 20 19 41 41 H 1.09003 * 109.45322 * 179.19246 * 21 20 19 42 42 H 1.09002 * 109.47401 * 306.04808 * 23 22 21 43 43 H 1.09001 * 109.46874 * 186.04821 * 23 22 21 44 44 H 1.08990 * 112.85361 * 45.33248 * 24 23 22 45 45 H 1.09003 * 113.61584 * 334.56887 * 25 24 23 46 46 H 1.09000 * 113.61286 * 105.47141 * 25 24 23 47 47 H 1.08994 * 113.53603 * 270.80817 * 26 25 24 48 48 H 1.09004 * 113.73863 * 139.94098 * 26 25 24 49 49 H 1.09000 * 113.61215 * 220.09246 * 27 26 25 50 50 H 1.08993 * 113.69471 * 89.19308 * 27 26 25 51 51 H 1.08998 * 109.46586 * 181.75949 * 28 22 21 52 52 H 1.09001 * 109.46136 * 301.72478 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6499 -0.7284 -3.5875 8 16 2.7099 0.4344 -4.9732 9 6 3.3131 -0.6308 -6.2406 10 1 3.5226 -1.6672 -6.0207 11 6 3.5191 -0.1379 -7.5217 12 7 3.2643 1.1254 -7.7897 13 14 4.1579 -1.2672 -8.8655 14 1 3.0121 -1.9043 -9.5629 15 1 4.9531 -0.4773 -9.8395 16 1 5.0164 -2.3181 -8.2622 17 6 2.0400 -0.7213 1.2492 18 1 1.6759 -1.7486 1.2504 19 6 3.5712 -0.7222 1.2495 20 6 4.0730 -1.3932 2.5311 21 6 3.5090 -0.6506 3.7446 22 7 2.0415 -0.6785 3.6984 23 6 1.4653 -0.0959 4.9176 24 6 1.7993 1.3960 4.9769 25 6 3.1673 1.6962 5.6120 26 6 2.4922 2.8928 6.3068 27 6 1.1683 2.1213 6.1773 28 6 1.5349 0.0019 2.4998 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 2.2490 -1.6317 -1.1527 33 1 3.6492 -1.1203 -3.3980 34 1 1.9777 -1.5508 -3.8326 35 1 3.4079 1.4698 -8.6851 36 1 3.9362 0.3040 1.2089 37 1 3.9354 -1.2740 0.3829 38 1 5.1622 -1.3590 2.5575 39 1 3.7405 -2.4311 2.5528 40 1 3.8533 0.3835 3.7297 41 1 3.8530 -1.1347 4.6586 42 1 1.8820 -0.5966 5.7916 43 1 0.3831 -0.2258 4.9060 44 1 1.6384 1.9039 4.0261 45 1 3.5067 0.9246 6.3031 46 1 3.9307 1.9838 4.8890 47 1 2.5221 3.8106 5.7197 48 1 2.8129 3.0394 7.3383 49 1 0.3201 2.7515 5.9099 50 1 0.9588 1.4658 7.0225 51 1 0.4451 -0.0081 2.5097 52 1 1.8884 1.0330 2.4908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266890774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = -33.244294 kcal Electronic energy + Delta-G solvation = -27719.430614 eV Core-core repulsion = 24037.779645 eV Total energy + Delta-G solvation = -3681.650968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = -0.36 seconds Orbital eigenvalues (eV) -40.51697 -39.38850 -38.14870 -35.63122 -33.24809 -32.41785 -32.03845 -29.55453 -28.44320 -28.01913 -26.06456 -25.48226 -24.61742 -24.18632 -22.16943 -21.12108 -20.37187 -19.98676 -19.40081 -17.82883 -16.71203 -16.36779 -16.11590 -15.55377 -15.30151 -15.11758 -14.95792 -14.79385 -14.45151 -14.15683 -13.99474 -13.67361 -13.37120 -13.25316 -13.14549 -12.89462 -12.83199 -12.66904 -12.47362 -12.25214 -11.92355 -11.77878 -11.65256 -11.57749 -11.25496 -11.08618 -11.05438 -11.00952 -10.84878 -10.76981 -10.71555 -10.53093 -10.46260 -10.42733 -9.79696 -9.32829 -9.05817 -8.82904 -8.48049 -8.21721 -6.48271 -6.20566 -3.90767 3.05126 3.14712 3.23049 3.28544 3.32605 3.56820 3.79923 4.18217 4.21711 4.26070 4.33221 4.44496 4.47277 4.58388 4.66781 4.88770 4.93915 4.99239 5.11716 5.12253 5.14503 5.18692 5.26029 5.29280 5.30571 5.32742 5.38303 5.40689 5.50400 5.50496 5.54454 5.60912 5.61683 5.65081 5.69439 5.74076 5.77122 5.81325 5.87510 5.91940 5.98239 6.07807 6.09369 6.16742 6.20210 6.28988 6.71876 6.81889 6.82689 7.60755 7.78314 8.36413 8.67673 9.24776 10.86835 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.001922 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.108659 B =14565.211782 C =14814.430841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 H 0.085 0.915 4 N -0.732 5.732 5 C 0.533 3.467 6 O -0.519 6.519 7 C -0.153 4.153 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.089 4.089 18 H 0.083 0.917 19 C -0.116 4.116 20 C -0.118 4.118 21 C 0.052 3.948 22 N -0.533 5.533 23 C 0.066 3.934 24 C -0.153 4.153 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.133 4.133 28 C 0.061 3.939 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.397 0.603 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 -4.106 30.048 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.103 0.897 4 N -0.386 5.386 5 C 0.319 3.681 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.108 4.108 18 H 0.101 0.899 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.076 4.076 22 N -0.256 5.256 23 C -0.062 4.062 24 C -0.172 4.172 25 C -0.173 4.173 26 C -0.181 4.181 27 C -0.171 4.171 28 C -0.067 4.067 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.858 -2.490 29.789 30.029 hybrid contribution 1.100 -1.651 -0.776 2.130 sum -1.759 -4.141 29.013 29.360 Atomic orbital electron populations 1.22237 0.95518 1.02088 1.02478 1.20830 0.93840 0.97373 0.83565 0.89711 1.46049 1.69257 1.13837 1.09439 1.20278 0.76831 0.87216 0.83752 1.90692 1.48413 1.15778 1.84408 1.23534 1.03606 1.04825 0.98447 1.85386 1.86304 1.12959 0.98763 1.22873 1.50887 0.98165 0.96397 0.90953 1.24995 0.95138 0.95532 0.97964 1.70020 1.45641 1.13189 1.21455 0.86169 0.78826 0.79960 0.80554 1.20281 1.20765 1.19705 1.21435 0.95835 1.00576 0.93001 0.89883 1.21621 0.94723 1.01229 0.97835 1.21603 0.99724 1.00189 0.94027 1.22188 0.87451 0.99330 0.98607 1.62110 1.07113 1.54457 1.01890 1.22220 1.00197 0.91175 0.92634 1.23289 0.97223 0.97862 0.98862 1.23050 0.96333 0.98313 0.99567 1.22853 0.96879 0.97605 1.00809 1.22845 0.97131 0.98988 0.98147 1.22137 1.00039 0.95576 0.88976 0.91914 0.91743 0.92484 0.76953 0.89334 0.89309 0.92210 0.92082 0.91338 0.91591 0.91214 0.94134 0.91200 0.90711 0.90592 0.88870 0.90184 0.91620 0.90313 0.91608 0.91577 0.90110 0.90244 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.14 37.16 0.34 -1.49 16 2 C 0.15 1.74 2.16 -67.93 -0.15 1.59 16 3 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.73 -9.68 4.43 -53.81 -0.24 -9.92 16 5 C 0.53 9.88 7.81 -10.98 -0.09 9.80 16 6 O -0.52 -11.71 15.52 5.56 0.09 -11.62 16 7 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 8 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 9 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 13 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C -0.09 -0.81 1.98 -90.54 -0.18 -0.99 16 18 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 19 C -0.12 -1.07 5.09 -26.61 -0.14 -1.21 16 20 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 21 C 0.05 0.39 4.63 -3.83 -0.02 0.37 16 22 N -0.53 -4.17 4.86 -234.67 -1.14 -5.31 16 23 C 0.07 0.43 5.27 -3.82 -0.02 0.41 16 24 C -0.15 -0.99 3.09 -89.80 -0.28 -1.27 16 25 C -0.14 -0.85 5.95 -25.82 -0.15 -1.01 16 26 C -0.14 -0.87 8.09 -25.83 -0.21 -1.08 16 27 C -0.13 -0.78 7.65 -25.92 -0.20 -0.97 16 28 C 0.06 0.51 3.84 -3.84 -0.01 0.49 16 29 H 0.06 0.58 6.46 -51.93 -0.34 0.24 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.21 8.40 -40.82 -0.34 3.87 16 33 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 34 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.04 0.32 5.71 -51.93 -0.30 0.03 16 41 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 42 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.72 6.08 -51.93 -0.32 0.41 16 45 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 46 H 0.07 0.46 7.28 -51.93 -0.38 0.08 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 51 H 0.08 0.64 6.47 -51.93 -0.34 0.30 16 52 H 0.04 0.36 6.34 -51.93 -0.33 0.03 16 LS Contribution 408.94 15.07 6.16 6.16 Total: -1.00 -33.10 408.94 -11.86 -44.96 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -9.39 Total: 1.00 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.84 Total: -12.34 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.64 Total: -40.77 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.10 -11.86 -44.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266890774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.716 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.35 seconds