Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47475 * 2 1 4 4 N 1.46500 * 109.47065 * 240.00211 * 2 1 3 5 5 C 1.34781 * 120.00089 * 84.99880 * 4 2 1 6 6 O 1.21281 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00014 * 179.97438 * 5 4 2 8 8 S 1.80999 * 109.46955 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99716 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00599 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99817 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00012 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00128 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47183 * 89.99657 * 13 11 9 15 15 H 1.48495 * 109.47308 * 209.99895 * 13 11 9 16 16 H 1.48503 * 109.46968 * 330.00333 * 13 11 9 17 17 C 1.52998 * 109.47333 * 120.00300 * 2 1 3 18 18 H 1.08995 * 109.50370 * 59.92265 * 17 2 1 19 19 C 1.53120 * 109.50265 * 179.97438 * 17 2 1 20 20 C 1.53120 * 109.15835 * 177.63149 * 19 17 2 21 21 C 1.53041 * 109.28215 * 302.34563 * 20 19 17 22 22 N 1.46846 * 109.52003 * 59.17728 * 21 20 19 23 23 C 1.46901 * 110.99738 * 174.15981 * 22 21 20 24 24 C 1.53000 * 109.46769 * 66.05101 * 23 22 21 25 25 C 1.53783 * 113.61182 * 274.13299 * 24 23 22 26 26 C 1.53957 * 87.01875 * 220.05000 * 25 24 23 27 27 C 1.53778 * 87.11265 * 25.36563 * 26 25 24 28 28 C 1.46839 * 111.20112 * 298.26039 * 22 21 20 29 29 H 1.08995 * 109.46884 * 299.99938 * 1 2 3 30 30 H 1.09001 * 109.47349 * 60.00163 * 1 2 3 31 31 H 1.09006 * 109.46598 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99983 * 264.99769 * 4 2 1 33 33 H 1.08998 * 109.47246 * 300.00474 * 7 5 4 34 34 H 1.09003 * 109.47117 * 59.99885 * 7 5 4 35 35 H 0.97000 * 119.99909 * 180.02562 * 12 11 9 36 36 H 1.08994 * 109.52534 * 57.73227 * 19 17 2 37 37 H 1.08995 * 109.52402 * 297.53367 * 19 17 2 38 38 H 1.09001 * 109.50461 * 182.40170 * 20 19 17 39 39 H 1.09002 * 109.50357 * 62.28890 * 20 19 17 40 40 H 1.09002 * 109.45916 * 299.16269 * 21 20 19 41 41 H 1.09003 * 109.45322 * 179.19246 * 21 20 19 42 42 H 1.09002 * 109.47401 * 306.04808 * 23 22 21 43 43 H 1.09001 * 109.46874 * 186.04821 * 23 22 21 44 44 H 1.08990 * 112.85361 * 45.33248 * 24 23 22 45 45 H 1.09003 * 113.61584 * 334.56887 * 25 24 23 46 46 H 1.09000 * 113.61286 * 105.47141 * 25 24 23 47 47 H 1.08994 * 113.53603 * 270.80817 * 26 25 24 48 48 H 1.09004 * 113.73863 * 139.94098 * 26 25 24 49 49 H 1.09000 * 113.61215 * 220.09246 * 27 26 25 50 50 H 1.08993 * 113.69471 * 89.19308 * 27 26 25 51 51 H 1.08998 * 109.46586 * 181.75949 * 28 22 21 52 52 H 1.09001 * 109.46136 * 301.72478 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6499 -0.7284 -3.5875 8 16 2.7099 0.4344 -4.9732 9 6 3.3131 -0.6308 -6.2406 10 1 3.5226 -1.6672 -6.0207 11 6 3.5191 -0.1379 -7.5217 12 7 3.2643 1.1254 -7.7897 13 14 4.1579 -1.2672 -8.8655 14 1 3.0121 -1.9043 -9.5629 15 1 4.9531 -0.4773 -9.8395 16 1 5.0164 -2.3181 -8.2622 17 6 2.0400 -0.7213 1.2492 18 1 1.6759 -1.7486 1.2504 19 6 3.5712 -0.7222 1.2495 20 6 4.0730 -1.3932 2.5311 21 6 3.5090 -0.6506 3.7446 22 7 2.0415 -0.6785 3.6984 23 6 1.4653 -0.0959 4.9176 24 6 1.7993 1.3960 4.9769 25 6 3.1673 1.6962 5.6120 26 6 2.4922 2.8928 6.3068 27 6 1.1683 2.1213 6.1773 28 6 1.5349 0.0019 2.4998 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 2.2490 -1.6317 -1.1527 33 1 3.6492 -1.1203 -3.3980 34 1 1.9777 -1.5508 -3.8326 35 1 3.4079 1.4698 -8.6851 36 1 3.9362 0.3040 1.2089 37 1 3.9354 -1.2740 0.3829 38 1 5.1622 -1.3590 2.5575 39 1 3.7405 -2.4311 2.5528 40 1 3.8533 0.3835 3.7297 41 1 3.8530 -1.1347 4.6586 42 1 1.8820 -0.5966 5.7916 43 1 0.3831 -0.2258 4.9060 44 1 1.6384 1.9039 4.0261 45 1 3.5067 0.9246 6.3031 46 1 3.9307 1.9838 4.8890 47 1 2.5221 3.8106 5.7197 48 1 2.8129 3.0394 7.3383 49 1 0.3201 2.7515 5.9099 50 1 0.9588 1.4658 7.0225 51 1 0.4451 -0.0081 2.5097 52 1 1.8884 1.0330 2.4908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266890774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -53.988427 kcal Electronic energy + Delta-G solvation = -27720.330147 eV Core-core repulsion = 24037.779645 eV Total energy + Delta-G solvation = -3682.550502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29277 -40.50677 -38.95993 -36.65514 -34.58690 -34.03501 -33.14208 -30.75531 -29.50430 -28.70815 -27.65976 -26.56075 -25.29525 -24.97006 -22.80238 -22.13634 -21.56216 -20.66714 -20.09796 -19.75272 -17.90544 -17.49474 -16.97534 -16.87889 -16.43195 -16.27454 -16.01897 -15.88790 -15.63631 -15.15721 -14.95263 -14.75902 -14.52877 -14.37611 -14.06041 -14.00566 -13.79772 -13.38816 -13.33354 -13.23322 -13.16227 -12.89409 -12.77379 -12.66244 -12.52629 -12.50286 -12.23041 -11.83881 -11.77925 -11.71954 -11.56067 -11.33440 -11.26026 -11.14387 -11.09491 -11.03262 -10.86096 -10.27355 -10.07699 -9.09515 -8.66565 -8.34768 -6.12716 1.27179 1.42264 1.47123 1.57644 1.64627 2.25543 2.29958 2.99165 2.99286 3.32483 3.62613 3.68315 3.78219 3.81818 3.83326 3.93520 3.99220 4.00331 4.20079 4.28184 4.31760 4.37240 4.39646 4.44236 4.51049 4.51912 4.57232 4.64050 4.73996 4.79663 4.83444 4.84921 4.87440 4.92344 4.95120 5.02356 5.03746 5.06015 5.10471 5.16475 5.20635 5.27932 5.30922 5.37685 5.41718 5.46627 5.57938 5.59273 6.17854 6.19737 6.22204 6.54888 7.06452 7.28755 8.74419 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.001922 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.108659 B =14565.211782 C =14814.430841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 H 0.059 0.941 4 N -0.706 5.706 5 C 0.536 3.464 6 O -0.566 6.566 7 C -0.129 4.129 8 S -0.152 6.152 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.258 1.258 17 C -0.076 4.076 18 H 0.096 0.904 19 C -0.117 4.117 20 C -0.113 4.113 21 C 0.053 3.947 22 N -0.535 5.535 23 C 0.068 3.932 24 C -0.151 4.151 25 C -0.133 4.133 26 C -0.147 4.147 27 C -0.128 4.128 28 C 0.064 3.936 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.271 0.729 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.086 0.914 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 -6.925 31.718 32.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.077 0.923 4 N -0.359 5.359 5 C 0.321 3.679 6 O -0.444 6.444 7 C -0.281 4.281 8 S 0.075 5.925 9 C -0.694 4.694 10 H 0.101 0.899 11 C -0.193 4.193 12 N -0.548 5.548 13 Si 0.821 3.179 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.182 1.182 17 C -0.095 4.095 18 H 0.114 0.886 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.075 4.075 22 N -0.257 5.257 23 C -0.060 4.060 24 C -0.171 4.171 25 C -0.171 4.171 26 C -0.184 4.184 27 C -0.167 4.167 28 C -0.064 4.064 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.251 0.749 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.110 0.890 51 H 0.104 0.896 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.658 -5.354 31.511 32.073 hybrid contribution 1.019 -0.771 -1.148 1.717 sum -1.640 -6.124 30.363 31.018 Atomic orbital electron populations 1.22187 0.94660 1.02977 1.01944 1.20934 0.94430 0.96318 0.83770 0.92322 1.45806 1.67388 1.14464 1.08284 1.20023 0.76679 0.86560 0.84599 1.90684 1.50806 1.17768 1.85163 1.23375 1.05432 1.03165 0.96091 1.85574 1.86716 1.17389 1.02792 1.23207 1.50857 0.98469 0.96842 0.89925 1.26143 0.95113 0.97218 1.00779 1.70187 1.46911 1.15466 1.22219 0.84946 0.78431 0.77743 0.76815 1.19296 1.20303 1.18171 1.21317 0.95658 1.00738 0.91766 0.88617 1.21616 0.94783 1.00361 0.98711 1.21569 1.00123 1.00151 0.93205 1.22195 0.87350 0.99027 0.98926 1.62132 1.07241 1.54342 1.01999 1.22249 1.00416 0.90977 0.92329 1.23214 0.97558 0.97905 0.98440 1.23046 0.95924 0.98639 0.99453 1.22866 0.97160 0.97309 1.01083 1.22844 0.96817 0.98899 0.98092 1.22071 1.00365 0.94953 0.89007 0.89875 0.94903 0.90788 0.74890 0.87359 0.87327 0.92015 0.93801 0.91613 0.91008 0.90744 0.94827 0.90092 0.89771 0.90211 0.90422 0.89300 0.92699 0.91037 0.90885 0.91786 0.88978 0.89577 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.14 71.98 0.66 -2.73 16 2 C 0.15 3.41 2.16 44.99 0.10 3.50 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 N -0.71 -17.89 4.43 -442.53 -1.96 -19.85 16 5 C 0.54 19.89 7.81 87.66 0.68 20.58 16 6 O -0.57 -26.50 15.52 -3.03 -0.05 -26.55 16 7 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 8 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 9 C -0.55 -31.39 9.50 67.96 0.65 -30.75 16 10 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.70 5.49 84.86 0.47 1.16 16 12 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 13 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 17 C -0.08 -1.24 1.98 -10.74 -0.02 -1.26 16 18 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.12 -2.01 5.09 30.67 0.16 -1.86 16 20 C -0.11 -1.56 6.09 30.65 0.19 -1.37 16 21 C 0.05 0.70 4.63 86.33 0.40 1.10 16 22 N -0.53 -7.23 4.86 -896.36 -4.35 -11.59 16 23 C 0.07 0.75 5.27 86.30 0.45 1.21 16 24 C -0.15 -1.80 3.09 -10.26 -0.03 -1.83 16 25 C -0.13 -1.54 5.95 31.18 0.19 -1.35 16 26 C -0.15 -1.64 8.09 31.18 0.25 -1.39 16 27 C -0.13 -1.32 7.65 31.12 0.24 -1.08 16 28 C 0.06 0.98 3.84 86.33 0.33 1.31 16 29 H 0.08 1.42 6.46 -2.39 -0.02 1.40 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.41 7.76 8.40 -92.71 -0.78 6.98 16 33 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 34 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.16 7.53 -2.39 -0.02 1.14 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.03 0.50 5.71 -2.39 -0.01 0.49 16 41 H 0.08 0.92 8.06 -2.39 -0.02 0.90 16 42 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 1.18 6.08 -2.39 -0.01 1.17 16 45 H 0.09 0.87 7.92 -2.39 -0.02 0.85 16 46 H 0.05 0.75 7.28 -2.39 -0.02 0.73 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16 51 H 0.09 1.20 6.47 -2.39 -0.02 1.19 16 52 H 0.03 0.51 6.34 -2.39 -0.02 0.50 16 Total: -1.00 -74.20 408.94 0.04 -74.16 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.11 Total: 23.25 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.14 Total: -19.49 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -6.03 Total: -87.55 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -74.20 0.04 -74.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266890774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.168 kcal (2) G-P(sol) polarization free energy of solvation -74.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds