Wall clock time and date at job start Sat Apr 11 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47475 * 2 1 4 4 C 1.53002 * 109.47101 * 239.99836 * 2 1 3 5 5 C 1.53003 * 109.47143 * 175.00265 * 4 2 1 6 6 N 1.46494 * 109.47047 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99920 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99943 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00062 * 180.02562 * 7 6 5 10 10 S 1.80992 * 109.47034 * 179.97438 * 9 7 6 11 11 C 1.76209 * 99.99888 * 180.02562 * 10 9 7 12 12 H 1.07991 * 119.99742 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99854 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00216 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99707 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46772 * 90.00671 * 15 13 11 17 17 H 1.48502 * 109.47182 * 210.00039 * 15 13 11 18 18 H 1.48497 * 109.47376 * 330.00184 * 15 13 11 19 19 N 1.46900 * 109.47116 * 119.99930 * 2 1 3 20 20 C 1.46904 * 110.99923 * 275.00116 * 19 2 1 21 21 C 1.53000 * 109.46949 * 180.02562 * 20 19 2 22 22 C 1.53952 * 113.57825 * 185.00024 * 21 20 19 23 23 C 1.52912 * 86.88147 * 220.53580 * 22 21 20 24 24 C 1.52916 * 121.13513 * 259.22361 * 23 22 21 25 25 C 1.53950 * 86.78251 * 209.38309 * 24 23 22 26 26 C 1.52914 * 121.13717 * 150.66534 * 23 22 21 27 27 C 1.53198 * 87.93551 * 24.89386 * 23 22 21 28 28 H 1.09001 * 109.47299 * 300.00234 * 1 2 3 29 29 H 1.08997 * 109.47077 * 60.00114 * 1 2 3 30 30 H 1.09004 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47281 * 295.00029 * 4 2 1 32 32 H 1.08994 * 109.47166 * 55.00366 * 4 2 1 33 33 H 1.09003 * 109.46840 * 300.00034 * 5 4 2 34 34 H 1.09002 * 109.47195 * 59.99775 * 5 4 2 35 35 H 0.97003 * 120.00412 * 0.02562 * 6 5 4 36 36 H 1.08994 * 109.46947 * 300.00480 * 9 7 6 37 37 H 1.09001 * 109.46630 * 59.99862 * 9 7 6 38 38 H 0.96996 * 120.00313 * 179.97438 * 14 13 11 39 39 H 1.00902 * 111.00230 * 151.04035 * 19 2 1 40 40 H 1.08995 * 109.47425 * 59.99745 * 20 19 2 41 41 H 1.09000 * 109.46552 * 299.99443 * 20 19 2 42 42 H 1.09005 * 112.82570 * 316.08378 * 21 20 19 43 43 H 1.09002 * 113.66200 * 335.05371 * 22 21 20 44 44 H 1.08998 * 113.66411 * 106.01564 * 22 21 20 45 45 H 1.08997 * 113.65977 * 323.85297 * 24 23 22 46 46 H 1.09000 * 113.66072 * 94.91134 * 24 23 22 47 47 H 1.09001 * 113.58060 * 270.13055 * 25 24 23 48 48 H 1.08999 * 113.65085 * 139.34488 * 25 24 23 49 49 H 1.08991 * 113.66231 * 265.08935 * 26 23 22 50 50 H 1.08997 * 113.65871 * 36.14377 * 26 23 22 51 51 H 1.09004 * 113.66695 * 220.62843 * 27 23 22 52 52 H 1.09000 * 113.74888 * 89.58514 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0532 -1.3045 -2.5094 7 6 5.3741 -1.3400 -2.7751 8 8 6.1584 -0.8002 -2.0239 9 6 5.8764 -2.0505 -4.0055 10 16 7.6801 -1.9217 -4.0824 11 6 7.9871 -2.8107 -5.5725 12 1 7.1634 -3.2335 -6.1284 13 6 9.2875 -2.9674 -6.0317 14 7 10.2914 -2.4525 -5.3539 15 14 9.6128 -3.9093 -7.6118 16 1 9.5840 -2.9707 -8.7623 17 1 10.9464 -4.5581 -7.5357 18 1 8.5669 -4.9476 -7.7935 19 7 2.0196 -0.6925 1.1994 20 6 2.0824 0.2226 2.3469 21 6 2.5962 -0.5328 3.5742 22 6 2.5843 0.3075 4.8641 23 6 3.9360 -0.3282 5.1913 24 6 4.0459 -1.4845 6.1859 25 6 5.4604 -0.9648 6.5010 26 6 4.9798 0.4177 6.0235 27 6 4.1312 -0.5538 3.6887 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7516 -1.7716 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0729 -0.4259 35 1 3.4259 -1.7360 -3.1105 36 1 5.5883 -3.1008 -3.9617 37 1 5.4415 -1.5912 -4.8932 38 1 11.2002 -2.5623 -5.6746 39 1 2.9173 -1.1206 1.0287 40 1 1.0871 0.6164 2.5525 41 1 2.7589 1.0462 2.1182 42 1 2.1369 -1.5147 3.6892 43 1 2.6374 1.3817 4.6870 44 1 1.7912 0.0312 5.5589 45 1 3.3544 -1.4070 7.0249 46 1 4.0357 -2.4680 5.7161 47 1 6.2352 -1.3992 5.8693 48 1 5.7119 -0.9968 7.5611 49 1 5.7155 0.9536 5.4241 50 1 4.5507 1.0296 6.8169 51 1 4.5750 -1.5192 3.4452 52 1 4.6193 0.2774 3.1798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267119902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:02 Heat of formation + Delta-G solvation = -16.812686 kcal Electronic energy + Delta-G solvation = -26518.620635 eV Core-core repulsion = 22837.682195 eV Total energy + Delta-G solvation = -3680.938440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.76104 -39.29000 -37.92593 -35.67255 -34.32074 -32.43084 -31.59324 -30.01955 -28.13347 -26.49358 -26.08873 -26.01541 -25.48612 -23.41375 -22.72705 -20.92774 -20.47561 -19.95497 -18.24138 -17.83074 -16.60820 -16.31068 -16.16915 -15.85219 -15.62922 -15.51688 -15.17940 -14.80580 -14.49357 -14.10061 -13.93956 -13.76391 -13.45326 -13.16903 -13.05380 -12.90815 -12.67285 -12.54538 -12.35755 -12.17343 -12.12697 -12.01520 -11.64056 -11.45415 -11.38967 -11.15345 -11.09139 -11.06383 -11.02572 -10.79811 -10.74884 -10.41545 -10.32677 -9.92769 -9.81779 -9.40902 -9.07374 -8.93074 -8.67325 -8.23902 -6.50253 -6.21825 -3.92434 3.02901 3.09297 3.22230 3.27820 3.32046 3.70545 3.77523 4.11430 4.16164 4.20286 4.34701 4.44803 4.51778 4.54569 4.56412 4.64576 4.86376 5.01527 5.12871 5.13299 5.14381 5.16500 5.19535 5.30928 5.35117 5.38961 5.40540 5.42705 5.45977 5.51015 5.54721 5.56325 5.61107 5.63367 5.69054 5.72187 5.75774 5.76878 5.83837 5.90308 5.91694 6.02045 6.08497 6.13826 6.18258 6.27971 6.59867 6.79640 7.13436 7.59455 7.70009 8.35132 8.60597 9.23461 10.85620 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.001909 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.242851 B =14664.146572 C =16684.802548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.087 3.913 3 H 0.046 0.954 4 C -0.135 4.135 5 C 0.119 3.881 6 N -0.738 5.738 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.687 5.687 20 C 0.069 3.931 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.141 4.141 26 C -0.130 4.130 27 C -0.115 4.115 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.345 0.655 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.070 0.930 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.130 4.978 19.594 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 H 0.064 0.936 4 C -0.173 4.173 5 C -0.006 4.006 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.321 5.321 20 C -0.060 4.060 21 C -0.123 4.123 22 C -0.159 4.159 23 C -0.105 4.105 24 C -0.154 4.154 25 C -0.178 4.178 26 C -0.167 4.167 27 C -0.152 4.152 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.165 0.835 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.088 0.912 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.227 5.664 21.034 29.727 hybrid contribution -0.199 -0.856 -2.400 2.556 sum -20.427 4.808 18.635 28.064 Atomic orbital electron populations 1.21772 0.94238 1.02413 1.01184 1.21435 0.96000 0.95981 0.88922 0.93571 1.22008 0.94505 1.02510 0.98281 1.21292 0.93283 0.97504 0.88472 1.45975 1.07812 1.58491 1.27003 1.20330 0.81478 0.79682 0.86812 1.90700 1.54970 1.44452 1.49135 1.23530 1.06841 1.02584 0.97452 1.85396 0.92202 1.72694 1.33143 1.22867 0.95475 1.40149 1.09853 0.90916 1.24998 0.95050 0.95669 0.97914 1.70016 0.99377 1.42679 1.38224 0.86163 0.77815 0.79581 0.81912 1.20277 1.20745 1.19686 1.60602 1.33923 1.33212 1.04338 1.21997 1.00381 0.93553 0.90105 1.22532 0.95875 1.00073 0.93806 1.22800 0.96728 0.99385 0.96940 1.22445 0.95825 0.97595 0.94632 1.22637 0.97160 0.97453 0.98156 1.22823 0.96957 0.96973 1.01078 1.22754 0.98204 0.96399 0.99370 1.22855 0.96138 1.02366 0.93890 0.92802 0.92574 0.91900 0.90177 0.90439 0.91925 0.91906 0.76755 0.89193 0.89238 0.92182 0.83509 0.91087 0.95066 0.88473 0.90104 0.91502 0.90058 0.91320 0.90105 0.91656 0.91407 0.90207 0.91173 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.41 37.16 0.35 -0.61 16 2 C 0.09 0.68 2.65 -67.71 -0.18 0.50 16 3 H 0.05 0.39 7.80 -51.93 -0.40 -0.02 16 4 C -0.13 -1.08 4.92 -26.73 -0.13 -1.21 16 5 C 0.12 1.35 5.50 -4.04 -0.02 1.32 16 6 N -0.74 -9.72 5.56 -60.29 -0.33 -10.05 16 7 C 0.53 9.92 7.85 -10.98 -0.09 9.84 16 8 O -0.52 -11.82 15.86 5.55 0.09 -11.73 16 9 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 15 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 N -0.69 -5.78 6.31 -106.73 -0.67 -6.45 16 20 C 0.07 0.54 5.32 -3.82 -0.02 0.52 16 21 C -0.10 -0.79 3.90 -89.63 -0.35 -1.14 16 22 C -0.12 -0.84 7.39 -26.28 -0.19 -1.04 16 23 C -0.10 -0.80 1.12 -154.55 -0.17 -0.97 16 24 C -0.12 -0.84 7.84 -26.28 -0.21 -1.05 16 25 C -0.14 -1.03 8.08 -25.75 -0.21 -1.24 16 26 C -0.13 -0.97 7.85 -26.28 -0.21 -1.17 16 27 C -0.12 -0.97 7.41 -26.14 -0.19 -1.16 16 28 H 0.05 0.37 7.45 -51.93 -0.39 -0.01 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 35 H 0.40 4.05 8.47 -40.82 -0.35 3.70 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 37 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.34 3.17 6.47 -39.29 -0.25 2.91 16 40 H 0.07 0.54 7.44 -51.93 -0.39 0.15 16 41 H 0.03 0.26 7.76 -51.93 -0.40 -0.14 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 52 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 LS Contribution 427.00 15.07 6.43 6.43 Total: -1.00 -33.33 427.00 -11.84 -45.18 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -9.65 Total: 2.88 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.20 Total: -13.29 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.27 Total: -42.01 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -33.33 -11.84 -45.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267119902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.364 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds