Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47475 * 2 1 4 4 C 1.53002 * 109.47101 * 239.99836 * 2 1 3 5 5 C 1.53003 * 109.47143 * 175.00265 * 4 2 1 6 6 N 1.46494 * 109.47047 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99920 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99943 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00062 * 180.02562 * 7 6 5 10 10 S 1.80992 * 109.47034 * 179.97438 * 9 7 6 11 11 C 1.76209 * 99.99888 * 180.02562 * 10 9 7 12 12 H 1.07991 * 119.99742 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99854 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00216 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99707 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46772 * 90.00671 * 15 13 11 17 17 H 1.48502 * 109.47182 * 210.00039 * 15 13 11 18 18 H 1.48497 * 109.47376 * 330.00184 * 15 13 11 19 19 N 1.46900 * 109.47116 * 119.99930 * 2 1 3 20 20 C 1.46904 * 110.99923 * 275.00116 * 19 2 1 21 21 C 1.53000 * 109.46949 * 180.02562 * 20 19 2 22 22 C 1.53952 * 113.57825 * 185.00024 * 21 20 19 23 23 C 1.52912 * 86.88147 * 220.53580 * 22 21 20 24 24 C 1.52916 * 121.13513 * 259.22361 * 23 22 21 25 25 C 1.53950 * 86.78251 * 209.38309 * 24 23 22 26 26 C 1.52914 * 121.13717 * 150.66534 * 23 22 21 27 27 C 1.53198 * 87.93551 * 24.89386 * 23 22 21 28 28 H 1.09001 * 109.47299 * 300.00234 * 1 2 3 29 29 H 1.08997 * 109.47077 * 60.00114 * 1 2 3 30 30 H 1.09004 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47281 * 295.00029 * 4 2 1 32 32 H 1.08994 * 109.47166 * 55.00366 * 4 2 1 33 33 H 1.09003 * 109.46840 * 300.00034 * 5 4 2 34 34 H 1.09002 * 109.47195 * 59.99775 * 5 4 2 35 35 H 0.97003 * 120.00412 * 0.02562 * 6 5 4 36 36 H 1.08994 * 109.46947 * 300.00480 * 9 7 6 37 37 H 1.09001 * 109.46630 * 59.99862 * 9 7 6 38 38 H 0.96996 * 120.00313 * 179.97438 * 14 13 11 39 39 H 1.00902 * 111.00230 * 151.04035 * 19 2 1 40 40 H 1.08995 * 109.47425 * 59.99745 * 20 19 2 41 41 H 1.09000 * 109.46552 * 299.99443 * 20 19 2 42 42 H 1.09005 * 112.82570 * 316.08378 * 21 20 19 43 43 H 1.09002 * 113.66200 * 335.05371 * 22 21 20 44 44 H 1.08998 * 113.66411 * 106.01564 * 22 21 20 45 45 H 1.08997 * 113.65977 * 323.85297 * 24 23 22 46 46 H 1.09000 * 113.66072 * 94.91134 * 24 23 22 47 47 H 1.09001 * 113.58060 * 270.13055 * 25 24 23 48 48 H 1.08999 * 113.65085 * 139.34488 * 25 24 23 49 49 H 1.08991 * 113.66231 * 265.08935 * 26 23 22 50 50 H 1.08997 * 113.65871 * 36.14377 * 26 23 22 51 51 H 1.09004 * 113.66695 * 220.62843 * 27 23 22 52 52 H 1.09000 * 113.74888 * 89.58514 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0532 -1.3045 -2.5094 7 6 5.3741 -1.3400 -2.7751 8 8 6.1584 -0.8002 -2.0239 9 6 5.8764 -2.0505 -4.0055 10 16 7.6801 -1.9217 -4.0824 11 6 7.9871 -2.8107 -5.5725 12 1 7.1634 -3.2335 -6.1284 13 6 9.2875 -2.9674 -6.0317 14 7 10.2914 -2.4525 -5.3539 15 14 9.6128 -3.9093 -7.6118 16 1 9.5840 -2.9707 -8.7623 17 1 10.9464 -4.5581 -7.5357 18 1 8.5669 -4.9476 -7.7935 19 7 2.0196 -0.6925 1.1994 20 6 2.0824 0.2226 2.3469 21 6 2.5962 -0.5328 3.5742 22 6 2.5843 0.3075 4.8641 23 6 3.9360 -0.3282 5.1913 24 6 4.0459 -1.4845 6.1859 25 6 5.4604 -0.9648 6.5010 26 6 4.9798 0.4177 6.0235 27 6 4.1312 -0.5538 3.6887 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7516 -1.7716 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0729 -0.4259 35 1 3.4259 -1.7360 -3.1105 36 1 5.5883 -3.1008 -3.9617 37 1 5.4415 -1.5912 -4.8932 38 1 11.2002 -2.5623 -5.6746 39 1 2.9173 -1.1206 1.0287 40 1 1.0871 0.6164 2.5525 41 1 2.7589 1.0462 2.1182 42 1 2.1369 -1.5147 3.6892 43 1 2.6374 1.3817 4.6870 44 1 1.7912 0.0312 5.5589 45 1 3.3544 -1.4070 7.0249 46 1 4.0357 -2.4680 5.7161 47 1 6.2352 -1.3992 5.8693 48 1 5.7119 -0.9968 7.5611 49 1 5.7155 0.9536 5.4241 50 1 4.5507 1.0296 6.8169 51 1 4.5750 -1.5192 3.4452 52 1 4.6193 0.2774 3.1798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267119902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -37.610902 kcal Electronic energy + Delta-G solvation = -26519.522513 eV Core-core repulsion = 22837.682195 eV Total energy + Delta-G solvation = -3681.840319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -41.38197 -40.66658 -38.71715 -36.45993 -35.38311 -34.59002 -32.47985 -31.20394 -29.21200 -27.66620 -27.14646 -26.71972 -26.61375 -24.27209 -23.39868 -21.96259 -21.37987 -20.76598 -19.81048 -18.85714 -17.84197 -17.42508 -17.09113 -16.88558 -16.80950 -16.42849 -16.34159 -16.09470 -15.79067 -15.28011 -14.92808 -14.73236 -14.59009 -14.44015 -14.03266 -13.69740 -13.62454 -13.49874 -13.25105 -13.17254 -12.96586 -12.89648 -12.84499 -12.65200 -12.62817 -12.39112 -12.17441 -12.11142 -11.85087 -11.74175 -11.71136 -11.42084 -11.14839 -11.03136 -10.96938 -10.93729 -10.53636 -10.28515 -10.15596 -9.36761 -8.67736 -8.35225 -6.13557 1.26443 1.42295 1.46743 1.57267 1.59339 2.25058 2.28904 2.98891 3.13200 3.31287 3.50345 3.54131 3.71470 3.77582 3.81886 3.89690 3.92087 3.95906 4.04255 4.11424 4.30037 4.35745 4.47637 4.50025 4.50387 4.55524 4.57780 4.66401 4.75057 4.80080 4.81801 4.86086 4.88866 4.91863 4.94678 5.01484 5.02858 5.05789 5.10188 5.14822 5.16930 5.20500 5.41207 5.41926 5.45070 5.48800 5.56037 5.65541 6.15037 6.19395 6.41297 6.49548 7.06001 7.22949 8.74030 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.001909 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.242851 B =14664.146572 C =16684.802548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.086 3.914 3 H 0.041 0.959 4 C -0.121 4.121 5 C 0.119 3.881 6 N -0.711 5.711 7 C 0.532 3.468 8 O -0.568 6.568 9 C -0.129 4.129 10 S -0.154 6.154 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.257 1.257 19 N -0.690 5.690 20 C 0.072 3.928 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.143 4.143 26 C -0.131 4.131 27 C -0.121 4.121 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.418 0.582 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.338 0.662 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.057 0.943 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.842 4.296 18.875 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.159 4.159 5 C -0.005 4.005 6 N -0.365 5.365 7 C 0.317 3.683 8 O -0.446 6.446 9 C -0.281 4.281 10 S 0.073 5.927 11 C -0.693 4.693 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.181 1.181 19 N -0.323 5.323 20 C -0.057 4.057 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.108 4.108 24 C -0.151 4.151 25 C -0.181 4.181 26 C -0.168 4.168 27 C -0.158 4.158 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.255 0.745 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.158 0.842 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.109 0.891 51 H 0.076 0.924 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.014 4.976 20.311 31.095 hybrid contribution 0.548 -0.609 -2.107 2.261 sum -22.466 4.366 18.203 29.243 Atomic orbital electron populations 1.21727 0.93060 1.02464 1.01819 1.21483 0.96795 0.95576 0.88537 0.94075 1.21931 0.91522 1.03274 0.99139 1.21412 0.95621 0.96372 0.87061 1.45718 1.06076 1.57199 1.27512 1.20111 0.82916 0.79289 0.85944 1.90691 1.56658 1.46733 1.50513 1.23372 1.00998 1.04400 0.99289 1.85592 0.99709 1.73351 1.34029 1.23205 0.96218 1.40093 1.09820 0.89827 1.26152 0.94691 0.96566 1.01881 1.70184 0.99936 1.44275 1.40418 0.84939 0.77965 0.78225 0.76761 1.19291 1.20328 1.18124 1.60675 1.33457 1.33420 1.04784 1.21974 1.00496 0.93217 0.89992 1.22450 0.94876 1.00005 0.94222 1.22761 0.96475 0.99352 0.96494 1.22471 0.96300 0.98040 0.93994 1.22652 0.97220 0.96952 0.98301 1.22828 0.96897 0.96886 1.01472 1.22784 0.98005 0.96480 0.99533 1.22838 0.96816 1.01267 0.94879 0.92795 0.91382 0.92074 0.89368 0.88707 0.93081 0.92823 0.74481 0.87136 0.87110 0.91998 0.84247 0.90388 0.95850 0.88882 0.89826 0.90540 0.88804 0.91818 0.91144 0.90682 0.92334 0.89086 0.92399 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.41 71.98 0.68 -0.86 16 2 C 0.09 1.21 2.65 44.92 0.12 1.33 16 3 H 0.04 0.63 7.80 -2.39 -0.02 0.62 16 4 C -0.12 -1.65 4.92 30.60 0.15 -1.50 16 5 C 0.12 2.57 5.50 86.38 0.48 3.05 16 6 N -0.71 -17.44 5.56 -463.05 -2.57 -20.01 16 7 C 0.53 19.60 7.85 87.66 0.69 20.29 16 8 O -0.57 -26.54 15.86 -3.04 -0.05 -26.59 16 9 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 10 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 11 C -0.55 -31.21 9.50 67.95 0.65 -30.57 16 12 H 0.08 4.42 7.80 -2.92 -0.02 4.40 16 13 C 0.01 0.67 5.49 84.86 0.47 1.14 16 14 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 15 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 19 N -0.69 -10.99 6.31 -491.57 -3.10 -14.09 16 20 C 0.07 1.08 5.32 86.30 0.46 1.54 16 21 C -0.10 -1.43 3.90 -10.16 -0.04 -1.47 16 22 C -0.11 -1.46 7.39 30.89 0.23 -1.23 16 23 C -0.11 -1.61 1.12 -52.21 -0.06 -1.67 16 24 C -0.11 -1.57 7.84 30.89 0.24 -1.33 16 25 C -0.14 -2.08 8.08 31.23 0.25 -1.82 16 26 C -0.13 -1.91 7.85 30.89 0.24 -1.67 16 27 C -0.12 -2.11 7.41 30.98 0.23 -1.88 16 28 H 0.05 0.63 7.45 -2.39 -0.02 0.62 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.30 6.43 -2.39 -0.02 1.28 16 35 H 0.42 7.16 8.47 -92.71 -0.79 6.38 16 36 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 37 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.34 6.13 6.47 -89.69 -0.58 5.55 16 40 H 0.08 1.07 7.44 -2.39 -0.02 1.05 16 41 H 0.02 0.39 7.76 -2.39 -0.02 0.37 16 42 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.07 1.41 7.90 -2.39 -0.02 1.39 16 Total: -1.00 -74.37 427.00 0.17 -74.20 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.48 Total: 27.90 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.22 Total: -21.32 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -5.39 Total: -90.09 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -74.37 0.17 -74.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267119902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.592 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds