Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46899 * 109.47163 * 239.99970 * 2 1 3 5 5 C 1.46898 * 110.99771 * 85.00049 * 4 2 1 6 6 C 1.52997 * 109.46667 * 179.97438 * 5 4 2 7 7 C 1.53007 * 109.47048 * 180.02562 * 6 5 4 8 8 C 1.52995 * 117.49993 * 243.62060 * 7 6 5 9 9 C 1.52995 * 60.00279 * 252.51414 * 8 7 6 10 10 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 11 11 C 1.53042 * 109.46219 * 60.07410 * 10 2 1 12 12 C 1.53186 * 109.31492 * 178.61366 * 11 10 2 13 13 N 1.46921 * 108.77964 * 54.62905 * 12 11 10 14 14 C 1.34779 * 120.62881 * 126.37117 * 13 12 11 15 15 O 1.21286 * 119.99690 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99897 * 0.02562 * 14 13 12 17 17 S 1.81004 * 109.46675 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99840 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99765 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00092 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00199 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99916 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47032 * 90.00055 * 22 20 18 24 24 H 1.48500 * 109.47242 * 210.00171 * 22 20 18 25 25 H 1.48505 * 109.47278 * 330.00078 * 22 20 18 26 26 C 1.46925 * 118.73954 * 306.39208 * 13 12 11 27 27 C 1.53039 * 109.46608 * 300.00195 * 10 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.00901 * 110.99931 * 208.95582 * 4 2 1 32 32 H 1.08993 * 109.47394 * 299.99882 * 5 4 2 33 33 H 1.09003 * 109.47121 * 60.00162 * 5 4 2 34 34 H 1.09004 * 109.47658 * 300.00213 * 6 5 4 35 35 H 1.08997 * 109.47410 * 59.99983 * 6 5 4 36 36 H 1.08994 * 115.54882 * 29.33200 * 7 6 5 37 37 H 1.09004 * 117.49860 * 0.02562 * 8 7 6 38 38 H 1.08999 * 117.50065 * 145.01716 * 8 7 6 39 39 H 1.09005 * 117.49387 * 252.51450 * 9 8 7 40 40 H 1.08991 * 117.50358 * 107.49215 * 9 8 7 41 41 H 1.09002 * 109.45643 * 180.02562 * 10 2 1 42 42 H 1.09005 * 109.48997 * 298.56259 * 11 10 2 43 43 H 1.08998 * 109.49986 * 58.65446 * 11 10 2 44 44 H 1.09005 * 109.58288 * 294.83889 * 12 11 10 45 45 H 1.09000 * 109.58787 * 174.42316 * 12 11 10 46 46 H 1.08999 * 109.47059 * 299.99788 * 16 14 13 47 47 H 1.08994 * 109.47539 * 60.00460 * 16 14 13 48 48 H 0.96994 * 120.00129 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.59115 * 293.82133 * 26 13 12 50 50 H 1.09001 * 109.59014 * 173.39008 * 26 13 12 51 51 H 1.09005 * 109.49419 * 301.34031 * 27 10 2 52 52 H 1.08997 * 109.49674 * 61.40085 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5963 -0.5329 -3.5740 7 6 2.6623 0.4204 -4.7690 8 6 1.7567 0.1183 -5.9646 9 6 3.2648 -0.1169 -6.0688 10 6 2.0399 -0.7212 1.2493 11 6 1.5311 -2.1646 1.2482 12 6 2.0719 -2.8934 2.4823 13 7 1.7085 -2.1263 3.6816 14 6 1.0550 -2.7163 4.7021 15 8 0.7602 -2.0721 5.6866 16 6 0.6907 -4.1762 4.6200 17 16 -0.1730 -4.6685 6.1326 18 6 -0.4705 -6.3682 5.7756 19 1 -0.1367 -6.7897 4.8390 20 6 -1.1348 -7.1650 6.6977 21 7 -1.3576 -8.4346 6.4309 22 14 -1.7128 -6.4357 8.3175 23 1 -3.0901 -5.9038 8.1574 24 1 -1.7074 -7.4887 9.3645 25 1 -0.8005 -5.3346 8.7182 26 6 2.0705 -0.7039 3.7470 27 6 1.5296 0.0004 2.4987 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.9174 -1.1205 -1.0287 32 1 1.0872 0.6163 -2.5525 33 1 2.7589 1.0462 -2.1181 34 1 3.5918 -0.9263 -3.3682 35 1 1.9203 -1.3567 -3.8029 36 1 2.8427 1.4674 -4.5258 37 1 1.1134 -0.7593 -5.8996 38 1 1.3408 0.9667 -6.5080 39 1 3.8412 0.5769 -6.6808 40 1 3.6142 -1.1493 -6.0726 41 1 3.1300 -0.7207 1.2494 42 1 0.4414 -2.1661 1.2732 43 1 1.8755 -2.6711 0.3466 44 1 3.1569 -2.9722 2.4138 45 1 1.6340 -3.8899 2.5393 46 1 0.0404 -4.3407 3.7608 47 1 1.5971 -4.7712 4.5088 48 1 -1.8214 -8.9915 7.0755 49 1 3.1554 -0.6041 3.7817 50 1 1.6316 -0.2557 4.6384 51 1 1.8730 1.0349 2.4871 52 1 0.4400 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267172489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -28.219250 kcal Electronic energy + Delta-G solvation = -27118.132785 eV Core-core repulsion = 23436.699719 eV Total energy + Delta-G solvation = -3681.433066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.22848 -38.70415 -37.95484 -36.14533 -33.60977 -32.42120 -31.66716 -30.58749 -29.13057 -28.42165 -25.69908 -25.45638 -23.51721 -23.13541 -22.76416 -21.84545 -20.91402 -19.95974 -18.83611 -17.66478 -16.90540 -16.46688 -15.85140 -15.59773 -15.50614 -15.39384 -15.17748 -14.93125 -14.57189 -14.30429 -13.98376 -13.81629 -13.64349 -13.24613 -13.01329 -12.92637 -12.73717 -12.37456 -12.31814 -12.20080 -12.02859 -11.97076 -11.83365 -11.71591 -11.64490 -11.24575 -11.11454 -10.99419 -10.88047 -10.73148 -10.65974 -10.54945 -10.37545 -10.29619 -9.84057 -9.41984 -8.98732 -8.77965 -8.53692 -8.46610 -6.89875 -6.27262 -3.98764 2.74996 2.97488 3.23498 3.33311 3.34647 3.52069 3.61231 3.67419 4.33282 4.34678 4.39708 4.44546 4.48290 4.49968 4.57204 4.74795 4.77759 4.88317 4.95260 4.97338 5.08473 5.11824 5.12546 5.15785 5.20825 5.22781 5.25665 5.30605 5.42269 5.44246 5.49008 5.52497 5.61477 5.63380 5.67074 5.69716 5.73571 5.75880 5.77363 5.80646 5.91416 5.93620 6.01443 6.02837 6.03462 6.29041 6.63041 6.71245 7.03766 7.52015 7.95801 8.43223 8.48400 9.19071 10.81938 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019164 B = 0.001883 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.748676 B =14862.771455 C =15784.389656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 H 0.042 0.958 4 N -0.685 5.685 5 C 0.063 3.937 6 C -0.087 4.087 7 C -0.153 4.153 8 C -0.180 4.180 9 C -0.182 4.182 10 C -0.087 4.087 11 C -0.125 4.125 12 C 0.105 3.895 13 N -0.617 5.617 14 C 0.533 3.467 15 O -0.522 6.522 16 C -0.121 4.121 17 S -0.144 6.144 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.114 3.886 27 C -0.129 4.129 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.340 0.660 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.270 0.730 49 H 0.061 0.939 50 H 0.092 0.908 51 H 0.070 0.930 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.555 19.872 -22.481 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 H 0.060 0.940 4 N -0.316 5.316 5 C -0.066 4.066 6 C -0.125 4.125 7 C -0.172 4.172 8 C -0.217 4.217 9 C -0.219 4.219 10 C -0.106 4.106 11 C -0.163 4.163 12 C -0.019 4.019 13 N -0.353 5.353 14 C 0.321 3.679 15 O -0.397 6.397 16 C -0.271 4.271 17 S 0.082 5.918 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.009 4.009 27 C -0.168 4.168 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.111 0.889 51 H 0.089 0.911 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.419 20.396 -21.120 30.834 hybrid contribution 0.824 -0.168 -0.437 0.948 sum 10.243 20.228 -21.557 31.286 Atomic orbital electron populations 1.21906 0.94384 1.02842 1.01065 1.21513 0.96273 0.95309 0.88747 0.94046 1.60517 1.33205 1.33399 1.04489 1.21966 1.00723 0.93642 0.90318 1.21142 1.01414 0.97489 0.92436 1.22281 1.05172 1.00062 0.89675 1.23045 0.93244 1.03444 1.01970 1.22963 0.96175 1.02323 1.00423 1.21303 0.99758 0.95730 0.93772 1.21958 1.01976 0.94690 0.97654 1.21797 0.99966 0.95912 0.84187 1.48069 1.58818 1.10328 1.18095 1.20294 0.76453 0.89105 0.82019 1.90681 1.52818 1.65243 1.30936 1.23303 1.04463 0.94378 1.04981 1.84787 1.73911 1.12582 1.20490 1.22314 1.43817 0.92309 1.08349 0.89396 1.24708 0.94200 0.94134 0.98240 1.69938 1.40201 1.05334 1.36235 0.86739 0.81188 0.80534 0.83411 1.19228 1.19961 1.15937 1.21488 0.99320 0.81033 0.99026 1.22009 1.02016 0.98845 0.93883 0.91422 0.92264 0.93202 0.84163 0.90927 0.95504 0.91766 0.90797 0.88023 0.88622 0.89004 0.88956 0.88740 0.91309 0.90854 0.89842 0.91647 0.89171 0.88561 0.88578 0.91968 0.92027 0.88932 0.91091 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.71 37.16 0.32 -0.86 16 2 C 0.09 0.66 2.44 -67.71 -0.17 0.49 16 3 H 0.04 0.30 7.80 -51.93 -0.40 -0.10 16 4 N -0.68 -4.64 5.57 -106.73 -0.59 -5.23 16 5 C 0.06 0.39 5.44 -3.83 -0.02 0.37 16 6 C -0.09 -0.51 5.75 -26.73 -0.15 -0.66 16 7 C -0.15 -0.87 5.74 -90.62 -0.52 -1.39 16 8 C -0.18 -1.01 10.18 -26.74 -0.27 -1.28 16 9 C -0.18 -0.98 10.25 -26.73 -0.27 -1.25 16 10 C -0.09 -0.66 1.83 -90.58 -0.17 -0.82 16 11 C -0.12 -1.09 4.82 -26.61 -0.13 -1.22 16 12 C 0.10 1.10 6.34 -3.72 -0.02 1.08 16 13 N -0.62 -8.37 2.97 -172.77 -0.51 -8.88 16 14 C 0.53 9.80 7.72 -10.99 -0.08 9.72 16 15 O -0.52 -11.48 15.28 5.55 0.08 -11.39 16 16 C -0.12 -2.39 4.50 36.00 0.16 -2.23 16 17 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 18 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 22 Si 0.86 21.93 27.74 -169.99 -4.71 17.22 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 26 C 0.11 1.30 6.43 -3.71 -0.02 1.27 16 27 C -0.13 -1.14 4.97 -26.61 -0.13 -1.27 16 28 H 0.07 0.63 6.46 -51.93 -0.34 0.29 16 29 H 0.06 0.49 6.46 -51.93 -0.34 0.15 16 30 H 0.05 0.40 7.45 -51.93 -0.39 0.01 16 31 H 0.34 2.06 8.19 -39.29 -0.32 1.74 16 32 H 0.07 0.51 7.44 -51.93 -0.39 0.12 16 33 H 0.03 0.17 8.06 -51.93 -0.42 -0.25 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.50 7.88 -51.93 -0.41 0.09 16 36 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.10 0.54 8.03 -51.93 -0.42 0.13 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.07 0.76 6.51 -51.93 -0.34 0.42 16 43 H 0.08 0.66 7.44 -51.93 -0.39 0.28 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 46 H 0.10 1.78 7.69 -51.92 -0.40 1.38 16 47 H 0.10 1.78 7.94 -51.92 -0.41 1.36 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.07 0.75 6.51 -51.93 -0.34 0.41 16 LS Contribution 412.02 15.07 6.21 6.21 Total: -1.00 -32.93 412.02 -11.35 -44.28 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -9.34 Total: -0.56 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.26 Total: -10.08 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.33 Total: -39.98 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.93 -11.35 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267172489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.058 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds