Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46899 * 109.47163 * 239.99970 * 2 1 3 5 5 C 1.46898 * 110.99771 * 85.00049 * 4 2 1 6 6 C 1.52997 * 109.46667 * 179.97438 * 5 4 2 7 7 C 1.53007 * 109.47048 * 180.02562 * 6 5 4 8 8 C 1.52995 * 117.49993 * 243.62060 * 7 6 5 9 9 C 1.52995 * 60.00279 * 252.51414 * 8 7 6 10 10 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 11 11 C 1.53042 * 109.46219 * 60.07410 * 10 2 1 12 12 C 1.53186 * 109.31492 * 178.61366 * 11 10 2 13 13 N 1.46921 * 108.77964 * 54.62905 * 12 11 10 14 14 C 1.34779 * 120.62881 * 126.37117 * 13 12 11 15 15 O 1.21286 * 119.99690 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99897 * 0.02562 * 14 13 12 17 17 S 1.81004 * 109.46675 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99840 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99765 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00092 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00199 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99916 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47032 * 90.00055 * 22 20 18 24 24 H 1.48500 * 109.47242 * 210.00171 * 22 20 18 25 25 H 1.48505 * 109.47278 * 330.00078 * 22 20 18 26 26 C 1.46925 * 118.73954 * 306.39208 * 13 12 11 27 27 C 1.53039 * 109.46608 * 300.00195 * 10 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.00901 * 110.99931 * 208.95582 * 4 2 1 32 32 H 1.08993 * 109.47394 * 299.99882 * 5 4 2 33 33 H 1.09003 * 109.47121 * 60.00162 * 5 4 2 34 34 H 1.09004 * 109.47658 * 300.00213 * 6 5 4 35 35 H 1.08997 * 109.47410 * 59.99983 * 6 5 4 36 36 H 1.08994 * 115.54882 * 29.33200 * 7 6 5 37 37 H 1.09004 * 117.49860 * 0.02562 * 8 7 6 38 38 H 1.08999 * 117.50065 * 145.01716 * 8 7 6 39 39 H 1.09005 * 117.49387 * 252.51450 * 9 8 7 40 40 H 1.08991 * 117.50358 * 107.49215 * 9 8 7 41 41 H 1.09002 * 109.45643 * 180.02562 * 10 2 1 42 42 H 1.09005 * 109.48997 * 298.56259 * 11 10 2 43 43 H 1.08998 * 109.49986 * 58.65446 * 11 10 2 44 44 H 1.09005 * 109.58288 * 294.83889 * 12 11 10 45 45 H 1.09000 * 109.58787 * 174.42316 * 12 11 10 46 46 H 1.08999 * 109.47059 * 299.99788 * 16 14 13 47 47 H 1.08994 * 109.47539 * 60.00460 * 16 14 13 48 48 H 0.96994 * 120.00129 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.59115 * 293.82133 * 26 13 12 50 50 H 1.09001 * 109.59014 * 173.39008 * 26 13 12 51 51 H 1.09005 * 109.49419 * 301.34031 * 27 10 2 52 52 H 1.08997 * 109.49674 * 61.40085 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5963 -0.5329 -3.5740 7 6 2.6623 0.4204 -4.7690 8 6 1.7567 0.1183 -5.9646 9 6 3.2648 -0.1169 -6.0688 10 6 2.0399 -0.7212 1.2493 11 6 1.5311 -2.1646 1.2482 12 6 2.0719 -2.8934 2.4823 13 7 1.7085 -2.1263 3.6816 14 6 1.0550 -2.7163 4.7021 15 8 0.7602 -2.0721 5.6866 16 6 0.6907 -4.1762 4.6200 17 16 -0.1730 -4.6685 6.1326 18 6 -0.4705 -6.3682 5.7756 19 1 -0.1367 -6.7897 4.8390 20 6 -1.1348 -7.1650 6.6977 21 7 -1.3576 -8.4346 6.4309 22 14 -1.7128 -6.4357 8.3175 23 1 -3.0901 -5.9038 8.1574 24 1 -1.7074 -7.4887 9.3645 25 1 -0.8005 -5.3346 8.7182 26 6 2.0705 -0.7039 3.7470 27 6 1.5296 0.0004 2.4987 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.9174 -1.1205 -1.0287 32 1 1.0872 0.6163 -2.5525 33 1 2.7589 1.0462 -2.1181 34 1 3.5918 -0.9263 -3.3682 35 1 1.9203 -1.3567 -3.8029 36 1 2.8427 1.4674 -4.5258 37 1 1.1134 -0.7593 -5.8996 38 1 1.3408 0.9667 -6.5080 39 1 3.8412 0.5769 -6.6808 40 1 3.6142 -1.1493 -6.0726 41 1 3.1300 -0.7207 1.2494 42 1 0.4414 -2.1661 1.2732 43 1 1.8755 -2.6711 0.3466 44 1 3.1569 -2.9722 2.4138 45 1 1.6340 -3.8899 2.5393 46 1 0.0404 -4.3407 3.7608 47 1 1.5971 -4.7712 4.5088 48 1 -1.8214 -8.9915 7.0755 49 1 3.1554 -0.6041 3.7817 50 1 1.6316 -0.2557 4.6384 51 1 1.8730 1.0349 2.4871 52 1 0.4400 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267172489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -47.495333 kcal Electronic energy + Delta-G solvation = -27118.968659 eV Core-core repulsion = 23436.699719 eV Total energy + Delta-G solvation = -3682.268940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.30308 -39.57331 -38.55661 -37.01882 -34.67681 -34.43275 -32.59856 -31.40729 -30.35031 -29.09433 -27.86373 -26.38768 -24.32477 -23.81719 -23.20566 -22.58076 -21.43319 -20.89340 -20.03796 -19.36592 -18.19465 -17.21075 -17.10211 -16.85378 -16.67752 -16.16279 -16.07553 -15.91185 -15.72605 -15.15279 -15.03182 -14.89612 -14.73169 -14.65375 -14.19430 -13.86662 -13.75122 -13.40804 -13.33750 -13.15751 -13.03278 -12.99479 -12.88245 -12.60052 -12.46177 -12.43497 -12.23276 -12.16904 -11.87779 -11.81419 -11.54307 -11.44778 -11.26808 -11.17345 -11.00191 -10.84462 -10.73397 -10.51742 -9.67241 -9.28510 -9.00570 -8.51580 -6.22719 0.97631 1.30982 1.46048 1.52958 1.54766 2.10424 2.25024 2.68451 2.86537 2.90472 3.14843 3.53992 3.73885 3.76637 3.89383 4.02796 4.04903 4.06316 4.15797 4.18499 4.23499 4.33883 4.36607 4.40853 4.41693 4.49175 4.51235 4.64140 4.68217 4.75424 4.80651 4.83892 4.86602 4.90974 4.94995 4.97994 5.06843 5.08667 5.10469 5.17538 5.21386 5.27982 5.31019 5.34646 5.46930 5.58412 5.62037 5.70777 6.11114 6.17626 6.28253 6.57388 6.93547 7.10281 8.60755 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019164 B = 0.001883 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.748676 B =14862.771455 C =15784.389656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.099 3.901 3 H 0.049 0.951 4 N -0.690 5.690 5 C 0.068 3.932 6 C -0.081 4.081 7 C -0.156 4.156 8 C -0.187 4.187 9 C -0.182 4.182 10 C -0.079 4.079 11 C -0.117 4.117 12 C 0.098 3.902 13 N -0.603 5.603 14 C 0.532 3.468 15 O -0.566 6.566 16 C -0.105 4.105 17 S -0.177 6.177 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.238 1.238 26 C 0.110 3.890 27 C -0.121 4.121 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.347 0.653 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.277 0.723 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.093 0.907 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.104 21.508 -23.575 34.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 H 0.067 0.933 4 N -0.322 5.322 5 C -0.062 4.062 6 C -0.118 4.118 7 C -0.175 4.175 8 C -0.224 4.224 9 C -0.219 4.219 10 C -0.097 4.097 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.337 5.337 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.256 4.256 17 S 0.049 5.951 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.162 1.162 26 C -0.012 4.012 27 C -0.160 4.160 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.166 0.834 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.111 0.889 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.997 22.033 -22.271 33.202 hybrid contribution 0.418 -0.636 -0.286 0.813 sum 11.414 21.397 -22.557 33.120 Atomic orbital electron populations 1.21888 0.95432 1.01857 1.00944 1.21391 0.95336 0.95652 0.88703 0.93321 1.60471 1.33775 1.33591 1.04368 1.21906 1.00330 0.93700 0.90220 1.21062 1.01303 0.97101 0.92361 1.22313 1.05249 1.00244 0.89658 1.23093 0.93479 1.03552 1.02258 1.23025 0.96004 1.02544 1.00310 1.21251 1.00725 0.94531 0.93239 1.21891 1.00848 0.95597 0.97171 1.22082 1.01610 0.95358 0.83389 1.48106 1.56626 1.11499 1.17472 1.20004 0.77091 0.88237 0.82700 1.90664 1.55167 1.65789 1.32928 1.23271 1.04451 0.96061 1.01828 1.84706 1.75268 1.10286 1.24818 1.22444 1.43555 0.94163 1.07443 0.91947 1.25545 0.94336 0.94521 1.01465 1.70012 1.41120 1.06509 1.37705 0.85878 0.80638 0.80064 0.79848 1.18742 1.18193 1.16186 1.21706 1.00680 0.79369 0.99432 1.21953 1.01012 0.99933 0.93088 0.92813 0.92512 0.93240 0.83351 0.91864 0.94911 0.91295 0.91890 0.87626 0.89018 0.88531 0.88263 0.88709 0.89405 0.92637 0.88420 0.88994 0.89988 0.87412 0.87145 0.91353 0.89595 0.91219 0.88852 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.71 71.98 0.63 -1.53 16 2 C 0.10 1.16 2.44 44.92 0.11 1.27 16 3 H 0.05 0.55 7.80 -2.39 -0.02 0.53 16 4 N -0.69 -7.60 5.57 -491.58 -2.74 -10.33 16 5 C 0.07 0.70 5.44 86.30 0.47 1.17 16 6 C -0.08 -0.80 5.75 30.60 0.18 -0.63 16 7 C -0.16 -1.53 5.74 -10.79 -0.06 -1.59 16 8 C -0.19 -1.90 10.18 30.59 0.31 -1.59 16 9 C -0.18 -1.70 10.25 30.59 0.31 -1.39 16 10 C -0.08 -0.95 1.83 -10.77 -0.02 -0.97 16 11 C -0.12 -1.77 4.82 30.67 0.15 -1.62 16 12 C 0.10 1.81 6.34 86.36 0.55 2.36 16 13 N -0.60 -15.37 2.97 -818.92 -2.43 -17.81 16 14 C 0.53 19.29 7.72 87.66 0.68 19.97 16 15 O -0.57 -25.08 15.28 -3.05 -0.05 -25.12 16 16 C -0.11 -4.13 4.50 71.23 0.32 -3.81 16 17 S -0.18 -9.17 18.55 -56.49 -1.05 -10.22 16 18 C -0.53 -31.13 10.04 67.95 0.68 -30.45 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 20 C 0.05 2.77 5.50 84.86 0.47 3.24 16 21 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 22 Si 0.91 45.47 27.74 68.60 1.90 47.37 16 23 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 26 C 0.11 2.28 6.43 86.36 0.56 2.83 16 27 C -0.12 -1.84 4.97 30.67 0.15 -1.69 16 28 H 0.05 0.96 6.46 -2.39 -0.02 0.94 16 29 H 0.06 0.87 6.46 -2.39 -0.02 0.86 16 30 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 31 H 0.35 3.06 8.19 -89.69 -0.73 2.33 16 32 H 0.06 0.79 7.44 -2.39 -0.02 0.77 16 33 H 0.03 0.32 8.06 -2.39 -0.02 0.30 16 34 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.06 0.78 7.88 -2.39 -0.02 0.76 16 36 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 37 H 0.09 0.99 8.03 -2.38 -0.02 0.97 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 42 H 0.05 1.07 6.51 -2.38 -0.02 1.06 16 43 H 0.10 1.26 7.44 -2.39 -0.02 1.24 16 44 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.08 1.68 5.93 -2.39 -0.01 1.67 16 46 H 0.11 3.96 7.69 -2.40 -0.02 3.95 16 47 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 48 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 49 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 1.81 7.01 -2.39 -0.02 1.80 16 51 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 52 H 0.06 1.10 6.51 -2.39 -0.02 1.08 16 Total: -1.00 -72.10 412.02 1.54 -70.56 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.12 Total: 15.68 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 5.48 Total: -14.43 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -4.87 Total: -83.84 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.22 kcal Total: -72.10 1.54 -70.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267172489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.066 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds