Wall clock time and date at job start Sat Apr 11 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47650 * 2 1 4 4 C 1.46898 * 110.99787 * 61.58931 * 3 2 1 5 5 C 1.52998 * 109.47392 * 66.04378 * 4 3 2 6 6 N 1.46494 * 109.47163 * 180.02562 * 5 4 3 7 7 C 1.34786 * 119.99869 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99774 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99922 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47021 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99902 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.38793 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99987 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00121 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46973 * 60.00496 * 15 13 11 17 17 H 1.48497 * 109.47146 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47103 * 300.00410 * 15 13 11 19 19 C 1.46895 * 110.99801 * 297.63550 * 3 2 1 20 20 C 1.53000 * 109.47305 * 288.22614 * 19 3 2 21 21 H 1.08998 * 109.61703 * 57.27044 * 20 19 3 22 22 C 1.53295 * 109.62239 * 296.90786 * 20 19 3 23 23 C 1.52869 * 108.59398 * 165.82564 * 22 20 19 24 24 C 1.52074 * 110.51337 * 54.89152 * 23 22 20 25 25 H 1.09005 * 114.63629 * 194.37682 * 24 23 22 26 26 C 1.52304 * 119.84133 * 49.54958 * 24 23 22 27 27 C 1.52064 * 120.02066 * 338.29858 * 24 23 22 28 28 H 1.09000 * 117.25704 * 216.66892 * 27 24 23 29 29 C 1.52722 * 120.52194 * 5.29221 * 27 24 23 30 30 H 1.09006 * 109.47079 * 300.83642 * 1 2 3 31 31 H 1.09007 * 109.46837 * 60.82611 * 1 2 3 32 32 H 1.08993 * 109.47541 * 180.82599 * 1 2 3 33 33 H 1.09009 * 109.47031 * 240.00070 * 2 1 3 34 34 H 1.08999 * 109.47429 * 120.00579 * 2 1 3 35 35 H 1.09011 * 109.47021 * 306.04681 * 4 3 2 36 36 H 1.09001 * 109.47233 * 186.04773 * 4 3 2 37 37 H 1.09001 * 109.46591 * 60.00257 * 5 4 3 38 38 H 1.09001 * 109.47254 * 300.00382 * 5 4 3 39 39 H 0.97000 * 120.00572 * 359.97438 * 6 5 4 40 40 H 1.09001 * 109.47262 * 300.00024 * 9 7 6 41 41 H 1.08996 * 109.47135 * 59.99556 * 9 7 6 42 42 H 0.96999 * 120.00112 * 179.97438 * 14 13 11 43 43 H 1.08996 * 109.47692 * 48.22865 * 19 3 2 44 44 H 1.09002 * 109.46826 * 168.23267 * 19 3 2 45 45 H 1.09001 * 109.61749 * 285.55890 * 22 20 19 46 46 H 1.09004 * 109.61865 * 45.91295 * 22 20 19 47 47 H 1.09007 * 109.26934 * 175.15309 * 23 22 20 48 48 H 1.08997 * 109.26900 * 294.62405 * 23 22 20 49 49 H 1.08995 * 117.53586 * 357.56091 * 26 24 23 50 50 H 1.08996 * 117.53758 * 142.72862 * 26 24 23 51 51 H 1.08999 * 109.35446 * 218.32164 * 29 27 24 52 52 H 1.08996 * 109.35777 * 98.73797 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5801 2.0988 1.2063 5 6 2.2441 1.4778 2.4369 6 7 1.8051 2.1893 3.6398 7 6 2.2645 1.8140 4.8501 8 8 3.0409 0.8871 4.9432 9 6 1.8134 2.5463 6.0876 10 16 2.5988 1.8116 7.5434 11 6 1.9150 2.8313 8.8073 12 1 1.2290 3.6245 8.5491 13 6 2.2572 2.6145 10.1348 14 7 3.0929 1.6474 10.4496 15 14 1.5328 3.6959 11.4747 16 1 0.0528 3.5758 11.4615 17 1 2.0534 3.2623 12.7961 18 1 1.9170 5.1096 11.2314 19 6 1.5955 2.0933 -1.2149 20 6 2.3815 1.5624 -2.4155 21 1 2.2307 0.4866 -2.5049 22 6 3.8734 1.8592 -2.2261 23 6 4.6675 1.0275 -3.2334 24 6 4.1722 1.2877 -4.6475 25 1 4.5110 0.5633 -5.3881 26 6 4.0095 2.7190 -5.1421 27 6 2.7753 1.8441 -4.8739 28 1 2.2265 1.4776 -5.7415 29 6 1.9043 2.2590 -3.6900 30 1 -0.3633 0.5268 0.8824 31 1 -0.3633 0.5010 -0.8974 32 1 -0.3634 -1.0275 0.0148 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.4968 2.0211 1.2999 36 1 1.8639 3.1485 1.1310 37 1 3.3273 1.5555 2.3432 38 1 1.9602 0.4281 2.5121 39 1 1.1844 2.9310 3.5654 40 1 2.0970 3.5961 6.0122 41 1 0.7303 2.4685 6.1813 42 1 3.3323 1.4961 11.3773 43 1 0.5301 1.9303 -1.3774 44 1 1.7864 3.1602 -1.0988 45 1 4.0605 2.9191 -2.3983 46 1 4.1733 1.5947 -1.2120 47 1 5.7226 1.2936 -3.1673 48 1 4.5486 -0.0304 -2.9996 49 1 4.2203 3.5229 -4.4369 50 1 4.2661 2.9253 -6.1812 51 1 0.8692 1.9805 -3.8880 52 1 1.9665 3.3389 -3.5565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267236962.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:31 Heat of formation + Delta-G solvation = -26.711305 kcal Electronic energy + Delta-G solvation = -26912.238981 eV Core-core repulsion = 23230.871304 eV Total energy + Delta-G solvation = -3681.367677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.28258 -39.26176 -38.30628 -34.80842 -33.62669 -32.41715 -31.37931 -30.91107 -29.75481 -27.99811 -25.72341 -25.42615 -24.71752 -23.80974 -21.58580 -21.53908 -20.46768 -19.82496 -18.79163 -17.79790 -16.62725 -16.52841 -16.48124 -16.11472 -15.49600 -15.09235 -14.79369 -14.72152 -14.51294 -14.20810 -14.10773 -13.87553 -13.54414 -13.36951 -13.08865 -13.01720 -12.57807 -12.55381 -12.43760 -12.32867 -12.11268 -12.06988 -11.62670 -11.58849 -11.46099 -11.08225 -11.04959 -11.03377 -11.02693 -10.76308 -10.75611 -10.51152 -10.08782 -9.94883 -9.81330 -9.38995 -9.05220 -8.83821 -8.56807 -8.22447 -6.48585 -6.20304 -3.90936 2.97348 3.13290 3.24190 3.25930 3.29576 3.36546 3.54313 3.96331 4.19533 4.21668 4.39714 4.44320 4.58649 4.60565 4.66375 4.81241 4.85731 4.90046 4.96854 5.01182 5.04648 5.14629 5.16205 5.18832 5.23275 5.28035 5.29346 5.34652 5.39258 5.41643 5.49335 5.58104 5.61799 5.67240 5.69026 5.77129 5.82775 5.86131 5.87648 5.92227 5.94570 5.95271 6.04358 6.14356 6.15261 6.19699 6.59514 6.76537 6.79643 7.60258 7.72843 8.36104 8.64458 9.24740 10.87051 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028095 B = 0.001603 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.363405 B =17464.354816 C =17651.750376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.527 5.527 4 C 0.041 3.959 5 C 0.125 3.875 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.055 3.945 20 C -0.079 4.079 21 H 0.073 0.927 22 C -0.111 4.111 23 C -0.089 4.089 24 C -0.138 4.138 25 H 0.094 0.906 26 C -0.183 4.183 27 C -0.149 4.149 28 H 0.098 0.902 29 C -0.084 4.084 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.062 0.938 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 1.541 -32.543 32.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.086 4.086 3 N -0.250 5.250 4 C -0.087 4.087 5 C 0.001 3.999 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.073 4.073 20 C -0.098 4.098 21 H 0.092 0.908 22 C -0.148 4.148 23 C -0.127 4.127 24 C -0.156 4.156 25 H 0.112 0.888 26 C -0.220 4.220 27 C -0.167 4.167 28 H 0.116 0.884 29 C -0.122 4.122 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.107 0.893 51 H 0.081 0.919 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.248 -0.130 -32.240 32.319 hybrid contribution -2.623 2.165 0.532 3.442 sum -4.871 2.035 -31.709 32.145 Atomic orbital electron populations 1.22423 0.98303 1.02624 1.01967 1.22281 0.92895 0.90072 1.03327 1.62056 1.59415 1.02315 1.01259 1.22300 0.98129 0.98512 0.89787 1.21181 1.00008 0.96177 0.82571 1.45926 1.50133 1.37289 1.06121 1.20276 0.80346 0.83759 0.83799 1.90705 1.33584 1.28606 1.86152 1.23529 1.04944 1.03460 0.98455 1.85404 1.60120 1.44758 0.93030 1.22833 1.32582 1.19895 0.93178 0.90990 1.24986 0.94939 0.95654 0.97967 1.70009 1.31844 1.29352 1.19068 0.86228 0.79254 0.80179 0.79851 1.19963 1.20804 1.19950 1.22211 0.97361 0.98215 0.89523 1.21141 0.95672 1.00321 0.92652 0.90849 1.21583 0.93832 0.99373 1.00046 1.20862 0.99442 1.00461 0.91902 1.21854 0.98647 0.96605 0.98515 0.88798 1.23115 1.02961 0.94281 1.01660 1.22180 0.89913 1.04567 1.00053 0.88378 1.21057 0.98213 1.00076 0.92833 0.92212 0.92481 0.91928 0.90391 0.90025 0.93713 0.90282 0.90825 0.91691 0.77028 0.89228 0.89294 0.92132 0.94057 0.90953 0.92556 0.89747 0.91685 0.91563 0.88666 0.89297 0.91900 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 9.28 37.16 0.34 -1.06 16 2 C 0.04 0.33 5.70 -3.83 -0.02 0.31 16 3 N -0.53 -4.17 3.86 -234.63 -0.91 -5.08 16 4 C 0.04 0.35 4.85 -3.83 -0.02 0.33 16 5 C 0.13 1.47 5.60 -4.05 -0.02 1.45 16 6 N -0.74 -9.83 5.56 -60.30 -0.33 -10.16 16 7 C 0.53 10.01 7.85 -10.98 -0.09 9.92 16 8 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 9 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 15 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.05 0.37 4.26 -3.83 -0.02 0.35 16 20 C -0.08 -0.51 2.15 -90.53 -0.19 -0.70 16 21 H 0.07 0.52 6.53 -51.93 -0.34 0.18 16 22 C -0.11 -0.79 5.02 -26.65 -0.13 -0.93 16 23 C -0.09 -0.61 5.93 -27.27 -0.16 -0.77 16 24 C -0.14 -0.89 6.00 -91.92 -0.55 -1.45 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 C -0.18 -1.13 9.66 -26.75 -0.26 -1.39 16 27 C -0.15 -0.92 6.19 -90.90 -0.56 -1.48 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 C -0.08 -0.49 5.12 -26.94 -0.14 -0.63 16 30 H 0.06 0.48 6.27 -51.93 -0.33 0.15 16 31 H 0.06 0.38 6.26 -51.93 -0.33 0.06 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.57 6.56 -51.92 -0.34 0.23 16 34 H 0.08 0.73 6.40 -51.93 -0.33 0.40 16 35 H 0.04 0.36 6.03 -51.92 -0.31 0.04 16 36 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.84 6.52 -51.93 -0.34 0.50 16 39 H 0.40 4.02 8.47 -40.82 -0.35 3.68 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.04 0.27 5.87 -51.93 -0.31 -0.04 16 44 H 0.07 0.48 7.81 -51.93 -0.41 0.08 16 45 H 0.06 0.41 7.11 -51.93 -0.37 0.05 16 46 H 0.08 0.72 7.37 -51.93 -0.38 0.34 16 47 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.09 0.61 7.26 -51.93 -0.38 0.23 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 LS Contribution 410.64 15.07 6.19 6.19 Total: -1.00 -33.34 410.64 -11.97 -45.31 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -9.10 Total: 0.48 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.40 Total: -11.96 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.51 Total: -40.75 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.34 -11.97 -45.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267236962.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.594 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds