Wall clock time and date at job start Sat Apr 11 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47650 * 2 1 4 4 C 1.46898 * 110.99787 * 61.58931 * 3 2 1 5 5 C 1.52998 * 109.47392 * 66.04378 * 4 3 2 6 6 N 1.46494 * 109.47163 * 180.02562 * 5 4 3 7 7 C 1.34786 * 119.99869 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99774 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99922 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47021 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99902 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.38793 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99987 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00121 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46973 * 60.00496 * 15 13 11 17 17 H 1.48497 * 109.47146 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47103 * 300.00410 * 15 13 11 19 19 C 1.46895 * 110.99801 * 297.63550 * 3 2 1 20 20 C 1.53000 * 109.47305 * 288.22614 * 19 3 2 21 21 H 1.08998 * 109.61703 * 57.27044 * 20 19 3 22 22 C 1.53295 * 109.62239 * 296.90786 * 20 19 3 23 23 C 1.52869 * 108.59398 * 165.82564 * 22 20 19 24 24 C 1.52074 * 110.51337 * 54.89152 * 23 22 20 25 25 H 1.09005 * 114.63629 * 194.37682 * 24 23 22 26 26 C 1.52304 * 119.84133 * 49.54958 * 24 23 22 27 27 C 1.52064 * 120.02066 * 338.29858 * 24 23 22 28 28 H 1.09000 * 117.25704 * 216.66892 * 27 24 23 29 29 C 1.52722 * 120.52194 * 5.29221 * 27 24 23 30 30 H 1.09006 * 109.47079 * 300.83642 * 1 2 3 31 31 H 1.09007 * 109.46837 * 60.82611 * 1 2 3 32 32 H 1.08993 * 109.47541 * 180.82599 * 1 2 3 33 33 H 1.09009 * 109.47031 * 240.00070 * 2 1 3 34 34 H 1.08999 * 109.47429 * 120.00579 * 2 1 3 35 35 H 1.09011 * 109.47021 * 306.04681 * 4 3 2 36 36 H 1.09001 * 109.47233 * 186.04773 * 4 3 2 37 37 H 1.09001 * 109.46591 * 60.00257 * 5 4 3 38 38 H 1.09001 * 109.47254 * 300.00382 * 5 4 3 39 39 H 0.97000 * 120.00572 * 359.97438 * 6 5 4 40 40 H 1.09001 * 109.47262 * 300.00024 * 9 7 6 41 41 H 1.08996 * 109.47135 * 59.99556 * 9 7 6 42 42 H 0.96999 * 120.00112 * 179.97438 * 14 13 11 43 43 H 1.08996 * 109.47692 * 48.22865 * 19 3 2 44 44 H 1.09002 * 109.46826 * 168.23267 * 19 3 2 45 45 H 1.09001 * 109.61749 * 285.55890 * 22 20 19 46 46 H 1.09004 * 109.61865 * 45.91295 * 22 20 19 47 47 H 1.09007 * 109.26934 * 175.15309 * 23 22 20 48 48 H 1.08997 * 109.26900 * 294.62405 * 23 22 20 49 49 H 1.08995 * 117.53586 * 357.56091 * 26 24 23 50 50 H 1.08996 * 117.53758 * 142.72862 * 26 24 23 51 51 H 1.08999 * 109.35446 * 218.32164 * 29 27 24 52 52 H 1.08996 * 109.35777 * 98.73797 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5801 2.0988 1.2063 5 6 2.2441 1.4778 2.4369 6 7 1.8051 2.1893 3.6398 7 6 2.2645 1.8140 4.8501 8 8 3.0409 0.8871 4.9432 9 6 1.8134 2.5463 6.0876 10 16 2.5988 1.8116 7.5434 11 6 1.9150 2.8313 8.8073 12 1 1.2290 3.6245 8.5491 13 6 2.2572 2.6145 10.1348 14 7 3.0929 1.6474 10.4496 15 14 1.5328 3.6959 11.4747 16 1 0.0528 3.5758 11.4615 17 1 2.0534 3.2623 12.7961 18 1 1.9170 5.1096 11.2314 19 6 1.5955 2.0933 -1.2149 20 6 2.3815 1.5624 -2.4155 21 1 2.2307 0.4866 -2.5049 22 6 3.8734 1.8592 -2.2261 23 6 4.6675 1.0275 -3.2334 24 6 4.1722 1.2877 -4.6475 25 1 4.5110 0.5633 -5.3881 26 6 4.0095 2.7190 -5.1421 27 6 2.7753 1.8441 -4.8739 28 1 2.2265 1.4776 -5.7415 29 6 1.9043 2.2590 -3.6900 30 1 -0.3633 0.5268 0.8824 31 1 -0.3633 0.5010 -0.8974 32 1 -0.3634 -1.0275 0.0148 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.4968 2.0211 1.2999 36 1 1.8639 3.1485 1.1310 37 1 3.3273 1.5555 2.3432 38 1 1.9602 0.4281 2.5121 39 1 1.1844 2.9310 3.5654 40 1 2.0970 3.5961 6.0122 41 1 0.7303 2.4685 6.1813 42 1 3.3323 1.4961 11.3773 43 1 0.5301 1.9303 -1.3774 44 1 1.7864 3.1602 -1.0988 45 1 4.0605 2.9191 -2.3983 46 1 4.1733 1.5947 -1.2120 47 1 5.7226 1.2936 -3.1673 48 1 4.5486 -0.0304 -2.9996 49 1 4.2203 3.5229 -4.4369 50 1 4.2661 2.9253 -6.1812 51 1 0.8692 1.9805 -3.8880 52 1 1.9665 3.3389 -3.5565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267236962.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:28 Heat of formation + Delta-G solvation = -47.088605 kcal Electronic energy + Delta-G solvation = -26913.122607 eV Core-core repulsion = 23230.871304 eV Total energy + Delta-G solvation = -3682.251303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.90031 -40.53369 -39.07668 -35.94438 -34.57664 -34.32017 -32.00290 -31.85578 -30.79730 -29.01738 -27.64524 -26.30106 -25.29348 -24.56739 -22.27187 -22.02559 -21.83857 -20.54885 -19.77727 -19.31466 -17.82596 -17.39729 -17.23455 -17.07673 -16.86910 -16.53828 -16.34718 -15.70885 -15.32105 -15.24325 -14.78405 -14.73344 -14.69352 -14.41695 -14.25880 -14.01697 -13.63807 -13.48913 -13.16223 -13.14890 -12.95946 -12.93416 -12.85858 -12.72523 -12.60592 -12.47895 -12.21612 -12.05730 -11.76103 -11.72109 -11.59885 -11.33214 -11.12084 -11.11051 -10.94329 -10.57969 -10.45034 -10.27068 -10.10122 -9.18008 -8.66139 -8.33544 -6.12027 1.27159 1.44709 1.47314 1.56987 1.61960 2.19471 2.28766 2.86327 3.00448 3.08822 3.35052 3.68438 3.83257 3.90485 3.93944 4.00222 4.04645 4.10432 4.14906 4.28358 4.30646 4.32506 4.39232 4.43242 4.46669 4.51641 4.51729 4.62719 4.71260 4.75726 4.81022 4.82922 4.90883 4.94532 4.95393 5.00284 5.08732 5.11029 5.12164 5.27620 5.33326 5.36023 5.41896 5.42548 5.42623 5.46073 5.58662 5.61244 6.11622 6.16346 6.20455 6.51376 7.07460 7.25436 8.75424 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028095 B = 0.001603 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.363405 B =17464.354816 C =17651.750376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.043 3.957 3 N -0.536 5.536 4 C 0.052 3.948 5 C 0.128 3.872 6 N -0.711 5.711 7 C 0.534 3.466 8 O -0.567 6.567 9 C -0.129 4.129 10 S -0.153 6.153 11 C -0.548 4.548 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.059 3.941 20 C -0.073 4.073 21 H 0.067 0.933 22 C -0.106 4.106 23 C -0.089 4.089 24 C -0.145 4.145 25 H 0.097 0.903 26 C -0.183 4.183 27 C -0.149 4.149 28 H 0.104 0.896 29 C -0.081 4.081 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.071 0.929 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 3.556 -33.939 34.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.084 4.084 3 N -0.259 5.259 4 C -0.076 4.076 5 C 0.004 3.996 6 N -0.366 5.366 7 C 0.319 3.681 8 O -0.445 6.445 9 C -0.280 4.280 10 S 0.074 5.926 11 C -0.696 4.696 12 H 0.102 0.898 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.069 4.069 20 C -0.091 4.091 21 H 0.086 0.914 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.164 4.164 25 H 0.115 0.885 26 C -0.220 4.220 27 C -0.167 4.167 28 H 0.123 0.877 29 C -0.119 4.119 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.114 0.886 51 H 0.090 0.910 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.365 1.920 -33.692 34.028 hybrid contribution -1.959 1.518 0.810 2.608 sum -6.325 3.439 -32.882 33.661 Atomic orbital electron populations 1.22364 0.97522 1.02789 1.02055 1.22234 0.93467 0.89988 1.02757 1.62016 1.59880 1.02436 1.01580 1.22174 0.98339 0.98736 0.88337 1.21223 0.99345 0.95863 0.83145 1.45627 1.49006 1.37129 1.04838 1.20069 0.80028 0.83089 0.84886 1.90695 1.36072 1.30847 1.86904 1.23365 1.05290 1.03859 0.95468 1.85606 1.62345 1.47092 0.97565 1.23184 1.32706 1.20020 0.93643 0.89821 1.26133 0.95144 0.97077 1.00783 1.70182 1.33484 1.31403 1.19702 0.85000 0.78743 0.78193 0.76027 1.18627 1.20432 1.18649 1.22209 0.97736 0.98212 0.88715 1.21068 0.95015 1.00026 0.93029 0.91422 1.21507 0.94537 0.99211 0.99142 1.20837 0.99292 1.00207 0.92285 1.21868 0.99245 0.97045 0.98211 0.88508 1.23145 1.02998 0.93909 1.01965 1.22259 0.89820 1.04263 1.00391 0.87746 1.21041 0.98569 1.00072 0.92220 0.92816 0.91546 0.91801 0.89915 0.91716 0.92477 0.88974 0.92562 0.92794 0.74645 0.87085 0.87109 0.92005 0.93249 0.90507 0.92727 0.91354 0.92019 0.91879 0.88976 0.88630 0.91043 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 9.28 71.98 0.67 -1.73 16 2 C 0.04 0.64 5.70 86.30 0.49 1.13 16 3 N -0.54 -7.72 3.86 -896.23 -3.46 -11.18 16 4 C 0.05 0.77 4.85 86.30 0.42 1.19 16 5 C 0.13 2.92 5.60 86.38 0.48 3.41 16 6 N -0.71 -17.70 5.56 -463.07 -2.57 -20.27 16 7 C 0.53 19.81 7.85 87.66 0.69 20.49 16 8 O -0.57 -26.82 15.86 -3.01 -0.05 -26.87 16 9 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 10 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 11 C -0.55 -31.32 9.50 67.95 0.65 -30.67 16 12 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 13 C 0.01 0.76 5.49 84.86 0.47 1.23 16 14 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 15 Si 1.00 43.52 29.55 68.60 2.03 45.54 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 C 0.06 0.66 4.26 86.30 0.37 1.02 16 20 C -0.07 -0.82 2.15 -10.74 -0.02 -0.84 16 21 H 0.07 0.87 6.53 -2.39 -0.02 0.85 16 22 C -0.11 -1.45 5.02 30.65 0.15 -1.29 16 23 C -0.09 -1.18 5.93 30.25 0.18 -1.00 16 24 C -0.15 -1.74 6.00 -11.64 -0.07 -1.81 16 25 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 26 C -0.18 -2.03 9.66 30.58 0.30 -1.73 16 27 C -0.15 -1.60 6.19 -10.98 -0.07 -1.66 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 C -0.08 -0.79 5.12 30.46 0.16 -0.64 16 30 H 0.05 0.75 6.27 -2.38 -0.01 0.73 16 31 H 0.07 0.72 6.26 -2.38 -0.01 0.71 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.13 6.56 -2.38 -0.02 1.12 16 34 H 0.06 1.17 6.40 -2.39 -0.02 1.16 16 35 H 0.06 0.74 6.03 -2.38 -0.01 0.73 16 36 H 0.09 1.17 7.86 -2.39 -0.02 1.15 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.39 6.52 -2.39 -0.02 1.37 16 39 H 0.42 7.16 8.47 -92.71 -0.79 6.37 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.05 0.50 5.87 -2.39 -0.01 0.48 16 44 H 0.08 0.82 7.81 -2.39 -0.02 0.81 16 45 H 0.05 0.76 7.11 -2.39 -0.02 0.74 16 46 H 0.07 1.16 7.37 -2.38 -0.02 1.14 16 47 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.09 1.07 7.26 -2.39 -0.02 1.06 16 50 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 Total: -1.00 -74.38 410.64 0.48 -73.90 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.12 Total: 22.08 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 5.29 Total: -17.54 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -5.74 Total: -87.38 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -74.38 0.48 -73.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267236962.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.807 kcal (2) G-P(sol) polarization free energy of solvation -74.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds