Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.46879 * 2 1 4 4 C 1.46903 * 111.00035 * 61.59202 * 3 2 1 5 5 C 1.53003 * 109.47026 * 66.03933 * 4 3 2 6 6 N 1.46506 * 109.46999 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99857 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00124 * 359.73034 * 7 6 5 9 9 C 1.50696 * 119.99727 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47257 * 179.72693 * 9 7 6 11 11 C 1.76198 * 100.00303 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99796 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99975 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00050 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00242 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46820 * 89.99809 * 15 13 11 17 17 H 1.48494 * 109.47264 * 209.99799 * 15 13 11 18 18 H 1.48496 * 109.47031 * 330.00067 * 15 13 11 19 19 C 1.46894 * 111.00479 * 297.63381 * 3 2 1 20 20 C 1.52998 * 109.47193 * 288.23581 * 19 3 2 21 21 H 1.08997 * 109.61463 * 57.23206 * 20 19 3 22 22 C 1.53295 * 109.61490 * 296.86667 * 20 19 3 23 23 C 1.52882 * 108.57968 * 165.82553 * 22 20 19 24 24 C 1.52719 * 110.15166 * 54.52592 * 23 22 20 25 25 H 1.08996 * 115.38949 * 127.16842 * 24 23 22 26 26 C 1.53644 * 116.02817 * 269.79392 * 24 23 22 27 27 C 1.49175 * 60.26684 * 111.29509 * 26 24 23 28 28 H 1.08998 * 116.23673 * 106.61965 * 27 26 24 29 29 C 1.52490 * 121.53926 * 250.73942 * 27 26 24 30 30 H 1.09003 * 109.46960 * 180.82941 * 1 2 3 31 31 H 1.08994 * 109.47476 * 300.83237 * 1 2 3 32 32 H 1.09007 * 109.47436 * 60.83363 * 1 2 3 33 33 H 1.08997 * 109.47104 * 240.00666 * 2 1 3 34 34 H 1.08994 * 109.47377 * 119.99963 * 2 1 3 35 35 H 1.09001 * 109.46644 * 306.04905 * 4 3 2 36 36 H 1.08993 * 109.47435 * 186.04594 * 4 3 2 37 37 H 1.09004 * 109.47090 * 60.00780 * 5 4 3 38 38 H 1.08993 * 109.47553 * 300.00588 * 5 4 3 39 39 H 0.97004 * 119.99957 * 0.02562 * 6 5 4 40 40 H 1.09006 * 109.47450 * 299.72711 * 9 7 6 41 41 H 1.08997 * 109.47238 * 59.72649 * 9 7 6 42 42 H 0.96996 * 120.00295 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.46681 * 48.23499 * 19 3 2 44 44 H 1.09002 * 109.47370 * 168.23033 * 19 3 2 45 45 H 1.08997 * 109.62438 * 285.55423 * 22 20 19 46 46 H 1.09005 * 109.61642 * 45.92282 * 22 20 19 47 47 H 1.09001 * 109.35460 * 174.73210 * 23 22 20 48 48 H 1.08993 * 109.36311 * 294.31641 * 23 22 20 49 49 H 1.08997 * 117.53927 * 219.05841 * 26 24 23 50 50 H 1.09001 * 117.54359 * 4.31618 * 26 24 23 51 51 H 1.08996 * 108.52899 * 288.97723 * 29 27 26 52 52 H 1.09002 * 110.48139 * 169.23141 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.5799 2.0989 1.2063 5 6 2.2440 1.4779 2.4369 6 7 1.8050 2.1894 3.6400 7 6 2.2644 1.8141 4.8502 8 8 3.0375 0.8843 4.9437 9 6 1.8124 2.5456 6.0877 10 16 2.5924 1.8065 7.5442 11 6 1.9073 2.8250 8.8083 12 1 1.2242 3.6205 8.5497 13 6 2.2463 2.6055 10.1362 14 7 1.7348 3.3666 11.0805 15 14 3.4283 1.2299 10.5834 16 1 4.8194 1.7497 10.5728 17 1 3.1017 0.7174 11.9382 18 1 3.3037 0.1291 9.5944 19 6 1.5954 2.0935 -1.2149 20 6 2.3812 1.5626 -2.4155 21 1 2.2310 0.4867 -2.5044 22 6 3.8731 1.8602 -2.2264 23 6 4.6672 1.0285 -3.2337 24 6 4.1567 1.2885 -4.6494 25 1 4.9179 1.5727 -5.3759 26 6 3.0280 0.3680 -5.1387 27 6 2.7465 1.8096 -4.8782 28 1 2.6081 2.4399 -5.7566 29 6 1.9001 2.2551 -3.6907 30 1 -0.3633 -1.0276 0.0149 31 1 -0.3634 0.5267 0.8824 32 1 -0.3634 0.5008 -0.8974 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.4967 2.0210 1.2999 36 1 1.8636 3.1485 1.1311 37 1 3.3272 1.5557 2.3433 38 1 1.9602 0.4282 2.5121 39 1 1.1836 2.9306 3.5656 40 1 2.0994 3.5947 6.0149 41 1 0.7288 2.4708 6.1786 42 1 1.9720 3.2135 12.0085 43 1 0.5299 1.9304 -1.3772 44 1 1.7861 3.1604 -1.0987 45 1 4.0597 2.9201 -2.3990 46 1 4.1732 1.5961 -1.2123 47 1 5.7214 1.2992 -3.1744 48 1 4.5543 -0.0296 -2.9976 49 1 3.0610 0.0385 -6.1772 50 1 2.6212 -0.3520 -4.4287 51 1 0.8632 1.9781 -3.8810 52 1 1.9650 3.3353 -3.5598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267236963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -26.377233 kcal Electronic energy + Delta-G solvation = -27007.404205 eV Core-core repulsion = 23326.051014 eV Total energy + Delta-G solvation = -3681.353190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.39997 -39.37765 -38.38596 -34.90299 -33.73889 -32.43269 -31.44758 -30.98709 -29.85438 -28.11675 -25.81127 -25.56710 -24.67537 -23.71548 -22.05543 -21.25769 -20.57554 -19.91890 -18.89395 -17.83189 -16.62324 -16.59205 -16.48268 -16.17464 -15.55533 -15.22244 -14.94539 -14.70050 -14.59728 -14.36173 -14.10175 -13.84300 -13.62947 -13.46261 -13.12814 -13.09439 -12.79091 -12.64906 -12.58385 -12.25282 -12.21081 -12.05578 -11.74372 -11.56452 -11.52868 -11.25869 -11.19070 -11.03908 -10.99838 -10.79814 -10.61237 -10.50874 -10.17601 -9.95670 -9.85182 -9.52297 -9.00782 -8.93138 -8.61216 -8.49141 -6.90963 -6.28373 -4.00024 2.74093 2.99913 3.19291 3.33995 3.38202 3.51313 3.54842 3.87174 4.19137 4.30999 4.33965 4.36650 4.54946 4.62785 4.65579 4.72922 4.79880 4.83546 4.85927 4.96231 5.00111 5.05580 5.10747 5.14533 5.17236 5.19794 5.22618 5.25600 5.30749 5.33448 5.43149 5.53690 5.58507 5.62352 5.64635 5.73849 5.75958 5.80068 5.81731 5.82511 5.85492 5.93155 5.99050 6.02023 6.11422 6.18686 6.50301 6.71959 6.73992 7.61766 7.94655 8.42025 8.51052 9.17894 10.80829 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.001667 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.881286 B =16797.051811 C =17035.855657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.527 5.527 4 C 0.041 3.959 5 C 0.125 3.875 6 N -0.737 5.737 7 C 0.531 3.469 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.055 3.945 20 C -0.083 4.083 21 H 0.071 0.929 22 C -0.108 4.108 23 C -0.089 4.089 24 C -0.153 4.153 25 H 0.099 0.901 26 C -0.179 4.179 27 C -0.137 4.137 28 H 0.092 0.908 29 C -0.084 4.084 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.398 0.602 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.062 0.938 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -2.719 -34.495 34.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.085 4.085 3 N -0.251 5.251 4 C -0.088 4.088 5 C 0.001 3.999 6 N -0.392 5.392 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C -0.073 4.073 20 C -0.101 4.101 21 H 0.089 0.911 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.171 4.171 25 H 0.117 0.883 26 C -0.216 4.216 27 C -0.156 4.156 28 H 0.111 0.889 29 C -0.122 4.122 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.080 0.920 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.321 -4.248 -34.143 34.407 hybrid contribution -1.754 1.061 0.140 2.055 sum -1.433 -3.187 -34.003 34.182 Atomic orbital electron populations 1.22425 0.98257 1.02642 1.02018 1.22274 0.92925 0.90093 1.03258 1.62054 1.59426 1.02295 1.01286 1.22300 0.98167 0.98567 0.89732 1.21197 1.00043 0.96165 0.82522 1.45884 1.49956 1.37319 1.06064 1.20246 0.80380 0.83791 0.83889 1.90704 1.33910 1.28486 1.86191 1.23276 1.04815 1.03302 0.96061 1.84795 1.62733 1.46628 0.97383 1.22323 1.32953 1.19447 0.92215 0.89402 1.24711 0.95412 0.95997 0.95169 1.69938 1.42898 1.38196 1.00681 0.86734 0.81779 0.83746 0.79593 1.19187 1.19949 1.15919 1.22203 0.97330 0.98288 0.89443 1.21188 0.95884 1.00198 0.92878 0.91075 1.21541 0.93618 0.99563 0.99811 1.21037 0.99443 1.00164 0.91962 1.22238 0.91279 1.05039 0.98540 0.88288 1.22597 1.03475 0.93534 1.01946 1.21286 0.97333 0.97005 0.99929 0.88942 1.20963 0.98341 1.00265 0.92612 0.91927 0.92176 0.92451 0.90476 0.90061 0.93648 0.90183 0.90766 0.91649 0.76839 0.88495 0.88513 0.91953 0.94045 0.90821 0.92333 0.89913 0.91729 0.91831 0.89210 0.88865 0.91965 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 9.28 37.15 0.34 -1.00 16 2 C 0.04 0.31 5.71 -3.83 -0.02 0.29 16 3 N -0.53 -3.96 3.86 -234.64 -0.91 -4.87 16 4 C 0.04 0.32 4.85 -3.82 -0.02 0.30 16 5 C 0.13 1.39 5.60 -4.04 -0.02 1.37 16 6 N -0.74 -9.21 5.56 -60.29 -0.33 -9.54 16 7 C 0.53 9.42 7.85 -10.99 -0.09 9.34 16 8 O -0.52 -11.29 15.86 5.56 0.09 -11.21 16 9 C -0.12 -2.39 6.16 36.00 0.22 -2.16 16 10 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 11 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 12 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 13 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 14 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 15 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 19 C 0.06 0.35 4.26 -3.83 -0.02 0.33 16 20 C -0.08 -0.51 1.92 -90.53 -0.17 -0.68 16 21 H 0.07 0.48 5.60 -51.93 -0.29 0.19 16 22 C -0.11 -0.75 5.25 -26.64 -0.14 -0.89 16 23 C -0.09 -0.59 5.83 -26.94 -0.16 -0.75 16 24 C -0.15 -0.97 6.29 -90.90 -0.57 -1.54 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 C -0.18 -1.06 9.56 -28.28 -0.27 -1.33 16 27 C -0.14 -0.82 5.82 -93.24 -0.54 -1.36 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 C -0.08 -0.47 5.29 -27.06 -0.14 -0.62 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 6.27 -51.93 -0.33 0.13 16 32 H 0.06 0.37 6.27 -51.93 -0.33 0.04 16 33 H 0.08 0.53 6.56 -51.93 -0.34 0.19 16 34 H 0.08 0.69 6.40 -51.93 -0.33 0.36 16 35 H 0.05 0.34 6.03 -51.93 -0.31 0.03 16 36 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.80 6.52 -51.93 -0.34 0.46 16 39 H 0.40 3.76 8.47 -40.82 -0.35 3.42 16 40 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.04 0.26 5.87 -51.93 -0.31 -0.05 16 44 H 0.07 0.47 7.81 -51.93 -0.41 0.06 16 45 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 46 H 0.08 0.68 7.38 -51.93 -0.38 0.30 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.57 7.27 -51.93 -0.38 0.19 16 51 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 52 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -32.99 407.86 -11.46 -44.45 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -9.13 Total: 0.05 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.38 Total: -10.74 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.47 Total: -40.24 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.99 -11.46 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267236963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.069 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds