Wall clock time and date at job start Sat Apr 11 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.46879 * 2 1 4 4 C 1.46903 * 111.00035 * 61.59202 * 3 2 1 5 5 C 1.53003 * 109.47026 * 66.03933 * 4 3 2 6 6 N 1.46506 * 109.46999 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99857 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00124 * 359.73034 * 7 6 5 9 9 C 1.50696 * 119.99727 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47257 * 179.72693 * 9 7 6 11 11 C 1.76198 * 100.00303 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99796 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99975 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00050 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00242 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46820 * 89.99809 * 15 13 11 17 17 H 1.48494 * 109.47264 * 209.99799 * 15 13 11 18 18 H 1.48496 * 109.47031 * 330.00067 * 15 13 11 19 19 C 1.46894 * 111.00479 * 297.63381 * 3 2 1 20 20 C 1.52998 * 109.47193 * 288.23581 * 19 3 2 21 21 H 1.08997 * 109.61463 * 57.23206 * 20 19 3 22 22 C 1.53295 * 109.61490 * 296.86667 * 20 19 3 23 23 C 1.52882 * 108.57968 * 165.82553 * 22 20 19 24 24 C 1.52719 * 110.15166 * 54.52592 * 23 22 20 25 25 H 1.08996 * 115.38949 * 127.16842 * 24 23 22 26 26 C 1.53644 * 116.02817 * 269.79392 * 24 23 22 27 27 C 1.49175 * 60.26684 * 111.29509 * 26 24 23 28 28 H 1.08998 * 116.23673 * 106.61965 * 27 26 24 29 29 C 1.52490 * 121.53926 * 250.73942 * 27 26 24 30 30 H 1.09003 * 109.46960 * 180.82941 * 1 2 3 31 31 H 1.08994 * 109.47476 * 300.83237 * 1 2 3 32 32 H 1.09007 * 109.47436 * 60.83363 * 1 2 3 33 33 H 1.08997 * 109.47104 * 240.00666 * 2 1 3 34 34 H 1.08994 * 109.47377 * 119.99963 * 2 1 3 35 35 H 1.09001 * 109.46644 * 306.04905 * 4 3 2 36 36 H 1.08993 * 109.47435 * 186.04594 * 4 3 2 37 37 H 1.09004 * 109.47090 * 60.00780 * 5 4 3 38 38 H 1.08993 * 109.47553 * 300.00588 * 5 4 3 39 39 H 0.97004 * 119.99957 * 0.02562 * 6 5 4 40 40 H 1.09006 * 109.47450 * 299.72711 * 9 7 6 41 41 H 1.08997 * 109.47238 * 59.72649 * 9 7 6 42 42 H 0.96996 * 120.00295 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.46681 * 48.23499 * 19 3 2 44 44 H 1.09002 * 109.47370 * 168.23033 * 19 3 2 45 45 H 1.08997 * 109.62438 * 285.55423 * 22 20 19 46 46 H 1.09005 * 109.61642 * 45.92282 * 22 20 19 47 47 H 1.09001 * 109.35460 * 174.73210 * 23 22 20 48 48 H 1.08993 * 109.36311 * 294.31641 * 23 22 20 49 49 H 1.08997 * 117.53927 * 219.05841 * 26 24 23 50 50 H 1.09001 * 117.54359 * 4.31618 * 26 24 23 51 51 H 1.08996 * 108.52899 * 288.97723 * 29 27 26 52 52 H 1.09002 * 110.48139 * 169.23141 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.5799 2.0989 1.2063 5 6 2.2440 1.4779 2.4369 6 7 1.8050 2.1894 3.6400 7 6 2.2644 1.8141 4.8502 8 8 3.0375 0.8843 4.9437 9 6 1.8124 2.5456 6.0877 10 16 2.5924 1.8065 7.5442 11 6 1.9073 2.8250 8.8083 12 1 1.2242 3.6205 8.5497 13 6 2.2463 2.6055 10.1362 14 7 1.7348 3.3666 11.0805 15 14 3.4283 1.2299 10.5834 16 1 4.8194 1.7497 10.5728 17 1 3.1017 0.7174 11.9382 18 1 3.3037 0.1291 9.5944 19 6 1.5954 2.0935 -1.2149 20 6 2.3812 1.5626 -2.4155 21 1 2.2310 0.4867 -2.5044 22 6 3.8731 1.8602 -2.2264 23 6 4.6672 1.0285 -3.2337 24 6 4.1567 1.2885 -4.6494 25 1 4.9179 1.5727 -5.3759 26 6 3.0280 0.3680 -5.1387 27 6 2.7465 1.8096 -4.8782 28 1 2.6081 2.4399 -5.7566 29 6 1.9001 2.2551 -3.6907 30 1 -0.3633 -1.0276 0.0149 31 1 -0.3634 0.5267 0.8824 32 1 -0.3634 0.5008 -0.8974 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.4967 2.0210 1.2999 36 1 1.8636 3.1485 1.1311 37 1 3.3272 1.5557 2.3433 38 1 1.9602 0.4282 2.5121 39 1 1.1836 2.9306 3.5656 40 1 2.0994 3.5947 6.0149 41 1 0.7288 2.4708 6.1786 42 1 1.9720 3.2135 12.0085 43 1 0.5299 1.9304 -1.3772 44 1 1.7861 3.1604 -1.0987 45 1 4.0597 2.9201 -2.3990 46 1 4.1732 1.5961 -1.2123 47 1 5.7214 1.2992 -3.1744 48 1 4.5543 -0.0296 -2.9976 49 1 3.0610 0.0385 -6.1772 50 1 2.6212 -0.3520 -4.4287 51 1 0.8632 1.9781 -3.8810 52 1 1.9650 3.3353 -3.5598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267236963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:38 Heat of formation + Delta-G solvation = -46.510074 kcal Electronic energy + Delta-G solvation = -27008.277230 eV Core-core repulsion = 23326.051014 eV Total energy + Delta-G solvation = -3682.226216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.96915 -40.59874 -39.10725 -35.96925 -34.66908 -34.39588 -32.06083 -31.88791 -30.82904 -29.06245 -27.84223 -26.37316 -25.25285 -24.38933 -22.64079 -21.88097 -21.79510 -20.59939 -19.83512 -19.38150 -17.88412 -17.44294 -17.24809 -17.06673 -16.96758 -16.53649 -16.35545 -15.65182 -15.31715 -15.16498 -15.00509 -14.90807 -14.72350 -14.57753 -14.38396 -14.04745 -13.65503 -13.55429 -13.34394 -13.18064 -13.07010 -13.01222 -12.89081 -12.65825 -12.61841 -12.45066 -12.20081 -12.09664 -11.86668 -11.75859 -11.57589 -11.36037 -11.16783 -11.10978 -10.97381 -10.65469 -10.52987 -10.43166 -10.12244 -9.18833 -8.99287 -8.51247 -6.22036 0.99138 1.31771 1.47071 1.55760 1.57000 2.15676 2.25736 2.70528 2.87056 2.91020 3.08112 3.72112 3.78436 3.81677 3.89121 3.95923 4.04315 4.14235 4.16205 4.23954 4.29456 4.30773 4.40915 4.45338 4.47200 4.47677 4.55240 4.62554 4.66420 4.72156 4.76376 4.80310 4.90059 4.92758 4.98372 5.06373 5.09499 5.11248 5.14057 5.28644 5.29703 5.34071 5.38461 5.39487 5.44579 5.57596 5.63666 5.71040 6.11007 6.11697 6.15253 6.47276 6.94083 7.20028 8.61037 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.001667 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.881286 B =16797.051811 C =17035.855657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 N -0.535 5.535 4 C 0.051 3.949 5 C 0.129 3.871 6 N -0.711 5.711 7 C 0.535 3.465 8 O -0.564 6.564 9 C -0.110 4.110 10 S -0.178 6.178 11 C -0.529 4.529 12 H 0.063 0.937 13 C 0.046 3.954 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.237 1.237 19 C 0.059 3.941 20 C -0.076 4.076 21 H 0.065 0.935 22 C -0.104 4.104 23 C -0.088 4.088 24 C -0.161 4.161 25 H 0.102 0.898 26 C -0.178 4.178 27 C -0.137 4.137 28 H 0.098 0.902 29 C -0.082 4.082 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.417 0.583 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.277 0.723 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.068 0.932 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -2.603 -36.486 36.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.084 4.084 3 N -0.259 5.259 4 C -0.077 4.077 5 C 0.005 3.995 6 N -0.365 5.365 7 C 0.321 3.679 8 O -0.442 6.442 9 C -0.261 4.261 10 S 0.049 5.951 11 C -0.677 4.677 12 H 0.081 0.919 13 C -0.159 4.159 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.161 1.161 19 C -0.069 4.069 20 C -0.095 4.095 21 H 0.084 0.916 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.179 4.179 25 H 0.120 0.880 26 C -0.215 4.215 27 C -0.156 4.156 28 H 0.116 0.884 29 C -0.119 4.119 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.114 0.886 50 H 0.108 0.892 51 H 0.087 0.913 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.261 -4.097 -36.173 36.405 hybrid contribution -1.631 1.085 0.602 2.049 sum -1.892 -3.012 -35.571 35.749 Atomic orbital electron populations 1.22368 0.97575 1.02782 1.02052 1.22227 0.93409 0.90014 1.02747 1.62019 1.59843 1.02410 1.01584 1.22186 0.98359 0.98795 0.88394 1.21239 0.99452 0.95879 0.82968 1.45620 1.48853 1.37155 1.04867 1.19948 0.80105 0.83129 0.84765 1.90696 1.36189 1.30493 1.86851 1.23264 1.05254 1.03828 0.93792 1.84741 1.63717 1.47059 0.99596 1.22466 1.32419 1.19209 0.93585 0.91870 1.25548 0.96953 0.98171 0.95230 1.70013 1.44296 1.39810 1.01312 0.85877 0.79799 0.80965 0.79799 1.18714 1.18312 1.16136 1.22202 0.97642 0.98317 0.88707 1.21112 0.95225 0.99909 0.93233 0.91636 1.21470 0.94318 0.99365 0.98964 1.21012 0.99431 0.99791 0.92326 1.22258 0.91673 1.05720 0.98266 0.88028 1.22622 1.03087 0.93554 1.02249 1.21360 0.96882 0.97049 1.00279 0.88375 1.20953 0.98557 1.00419 0.92013 0.91804 0.92744 0.91675 0.90085 0.91535 0.92533 0.88954 0.92303 0.92596 0.74599 0.86721 0.86708 0.91377 0.93353 0.90361 0.92537 0.91395 0.91862 0.92341 0.88555 0.89155 0.91328 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 9.28 71.98 0.67 -1.58 16 2 C 0.04 0.60 5.71 86.30 0.49 1.09 16 3 N -0.54 -7.15 3.86 -896.26 -3.46 -10.61 16 4 C 0.05 0.69 4.85 86.30 0.42 1.11 16 5 C 0.13 2.68 5.60 86.38 0.48 3.16 16 6 N -0.71 -16.24 5.56 -463.05 -2.57 -18.81 16 7 C 0.54 18.27 7.85 87.66 0.69 18.96 16 8 O -0.56 -24.36 15.86 -3.04 -0.05 -24.41 16 9 C -0.11 -4.10 6.16 71.23 0.44 -3.66 16 10 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 11 C -0.53 -30.80 10.04 67.95 0.68 -30.12 16 12 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 13 C 0.05 2.73 5.50 84.86 0.47 3.19 16 14 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 15 Si 0.91 45.13 27.74 68.60 1.90 47.04 16 16 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 19 C 0.06 0.62 4.26 86.30 0.37 0.98 16 20 C -0.08 -0.81 1.92 -10.74 -0.02 -0.83 16 21 H 0.07 0.79 5.60 -2.39 -0.01 0.78 16 22 C -0.10 -1.34 5.25 30.65 0.16 -1.18 16 23 C -0.09 -1.12 5.83 30.46 0.18 -0.94 16 24 C -0.16 -1.86 6.29 -10.98 -0.07 -1.93 16 25 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 26 C -0.18 -1.88 9.56 29.59 0.28 -1.60 16 27 C -0.14 -1.41 5.82 -12.49 -0.07 -1.49 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 C -0.08 -0.76 5.29 30.38 0.16 -0.60 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.71 6.27 -2.39 -0.01 0.70 16 32 H 0.06 0.68 6.27 -2.38 -0.01 0.66 16 33 H 0.08 1.04 6.56 -2.39 -0.02 1.02 16 34 H 0.07 1.11 6.40 -2.39 -0.02 1.09 16 35 H 0.06 0.68 6.03 -2.39 -0.01 0.66 16 36 H 0.09 1.07 7.86 -2.39 -0.02 1.05 16 37 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.06 1.32 6.52 -2.39 -0.02 1.30 16 39 H 0.42 6.56 8.47 -92.71 -0.79 5.78 16 40 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 41 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 42 H 0.28 15.58 8.31 -92.71 -0.77 14.80 16 43 H 0.05 0.46 5.87 -2.39 -0.01 0.45 16 44 H 0.08 0.78 7.81 -2.39 -0.02 0.76 16 45 H 0.06 0.75 8.05 -2.39 -0.02 0.73 16 46 H 0.07 1.09 7.38 -2.38 -0.02 1.07 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.79 8.06 -2.39 -0.02 0.77 16 49 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.09 1.01 7.27 -2.39 -0.02 0.99 16 51 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -71.38 407.86 0.48 -70.90 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.08 Total: 16.84 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 5.33 Total: -15.44 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -5.73 Total: -84.88 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -71.38 0.48 -70.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267236963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.386 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds