Wall clock time and date at job start Sat Apr 11 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99742 * 2 1 4 4 C 1.53002 * 109.46975 * 125.00139 * 3 2 1 5 5 C 1.53002 * 109.47024 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46780 * 180.02562 * 5 4 3 7 7 C 1.46900 * 111.00497 * 293.95444 * 6 5 4 8 8 C 1.46910 * 110.99649 * 170.00090 * 6 5 4 9 9 C 1.52992 * 109.46910 * 199.76920 * 8 6 5 10 10 C 1.53351 * 109.40785 * 185.55523 * 9 8 6 11 11 C 1.53188 * 109.15161 * 178.68291 * 10 9 8 12 12 N 1.46928 * 108.89175 * 54.58034 * 11 10 9 13 13 C 1.34776 * 120.62938 * 126.33951 * 12 11 10 14 14 O 1.21287 * 120.00256 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00315 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.47628 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00287 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99806 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00194 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99757 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47030 * 60.00182 * 21 19 17 23 23 H 1.48499 * 109.47322 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47381 * 299.99930 * 21 19 17 25 25 C 1.46924 * 118.74081 * 306.32042 * 12 11 10 26 26 C 1.53039 * 109.45946 * 65.44193 * 9 8 6 27 27 H 1.07998 * 120.00278 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99381 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00750 * 180.02562 * 2 1 3 30 30 H 1.09009 * 109.46979 * 5.00791 * 3 2 1 31 31 H 1.08996 * 109.47873 * 245.00762 * 3 2 1 32 32 H 1.09000 * 109.46519 * 60.00531 * 4 3 2 33 33 H 1.08994 * 109.47263 * 300.00173 * 4 3 2 34 34 H 1.09009 * 109.46941 * 60.00645 * 5 4 3 35 35 H 1.08994 * 109.47353 * 300.00741 * 5 4 3 36 36 H 1.09007 * 109.47080 * 301.84999 * 7 6 5 37 37 H 1.09002 * 109.46564 * 61.84754 * 7 6 5 38 38 H 1.08996 * 109.47064 * 181.84488 * 7 6 5 39 39 H 1.09008 * 109.46501 * 79.77406 * 8 6 5 40 40 H 1.08995 * 109.46967 * 319.77756 * 8 6 5 41 41 H 1.09001 * 109.46588 * 305.46447 * 9 8 6 42 42 H 1.09008 * 109.68274 * 58.71981 * 10 9 8 43 43 H 1.08993 * 109.47483 * 298.52544 * 10 9 8 44 44 H 1.08994 * 109.59194 * 294.72209 * 11 10 9 45 45 H 1.09002 * 109.58833 * 174.43535 * 11 10 9 46 46 H 1.09002 * 109.46809 * 300.00283 * 15 13 12 47 47 H 1.09003 * 109.47066 * 59.99467 * 15 13 12 48 48 H 0.97001 * 119.99905 * 180.02562 * 20 19 17 49 49 H 1.08998 * 109.58531 * 173.39519 * 25 12 11 50 50 H 1.08996 * 109.58586 * 293.67831 * 25 12 11 51 51 H 1.09001 * 109.50351 * 61.41683 * 26 9 8 52 52 H 1.09004 * 109.52655 * 301.33492 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6579 1.1813 6 7 4.7337 2.6845 2.3154 7 6 4.0092 2.6998 3.5933 8 6 5.6503 3.8282 2.2162 9 6 6.8819 3.5718 3.0870 10 6 7.7710 4.8212 3.0928 11 6 8.9852 4.5698 3.9923 12 7 9.6641 3.3462 3.5441 13 6 10.9806 3.3577 3.2561 14 8 11.6167 4.3845 3.3663 15 6 11.6625 2.0947 2.7970 16 16 13.4147 2.4312 2.4929 17 6 13.9497 0.8316 1.9831 18 1 13.2443 0.0150 1.9391 19 6 15.2775 0.6211 1.6380 20 7 16.1371 1.6166 1.6912 21 14 15.8447 -1.0748 1.0983 22 1 15.0897 -1.4872 -0.1123 23 1 17.2960 -1.0354 0.7863 24 1 15.5991 -2.0499 2.1909 25 6 8.8805 2.1099 3.4163 26 6 7.6671 2.3855 2.5227 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0897 31 1 2.6212 1.4029 -0.9314 32 1 3.7400 0.5067 1.0919 33 1 2.4773 1.2356 2.1130 34 1 3.0957 3.4848 1.2708 35 1 4.3581 2.7551 0.2499 36 1 3.3510 3.5681 3.6274 37 1 3.4157 1.7902 3.6852 38 1 4.7232 2.7525 4.4151 39 1 5.1440 4.7304 2.5597 40 1 5.9591 3.9574 1.1789 41 1 6.5660 3.3467 4.1056 42 1 7.2060 5.6721 3.4737 43 1 8.1076 5.0324 2.0779 44 1 8.6565 4.4481 5.0244 45 1 9.6713 5.4140 3.9245 46 1 11.5683 1.3300 3.5680 47 1 11.1948 1.7429 1.8774 48 1 17.0650 1.4696 1.4497 49 1 9.4968 1.3317 2.9661 50 1 8.5454 1.7863 4.4017 51 1 8.0045 2.6196 1.5131 52 1 7.0267 1.5038 2.4970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267597841.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:46 Heat of formation + Delta-G solvation = -49.420559 kcal Electronic energy + Delta-G solvation = -26934.590033 eV Core-core repulsion = 23252.237609 eV Total energy + Delta-G solvation = -3682.352424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.18376 -39.45983 -38.01327 -36.35545 -34.58381 -34.35003 -32.52546 -31.80659 -30.55032 -28.44960 -27.71212 -27.53880 -25.26566 -24.19385 -23.09715 -21.67455 -21.34189 -20.59517 -20.27854 -19.46714 -18.11817 -16.99313 -16.88302 -16.83854 -16.69928 -16.40957 -15.92496 -15.80506 -15.65933 -15.26095 -14.96703 -14.76883 -14.48895 -14.46768 -14.16124 -14.07174 -13.88540 -13.47169 -13.33404 -13.16476 -12.99144 -12.86172 -12.80472 -12.70650 -12.60959 -12.43967 -12.20491 -12.16661 -11.88351 -11.72458 -11.59372 -11.50137 -11.34871 -11.20427 -11.12402 -10.81873 -10.26394 -10.18336 -9.64462 -9.20097 -8.67198 -8.33848 -6.12580 1.26234 1.42551 1.44410 1.46273 1.56207 1.58708 2.14477 2.28263 2.96202 2.99988 3.26360 3.67559 3.77229 3.88319 3.94497 4.01179 4.09013 4.17933 4.25231 4.29937 4.34275 4.37133 4.42385 4.44924 4.48275 4.53853 4.61104 4.64687 4.66518 4.75982 4.77262 4.86173 4.89291 4.91240 4.95423 5.05429 5.05802 5.08968 5.11621 5.17400 5.27961 5.31235 5.41786 5.42177 5.52260 5.65517 5.78423 5.91784 6.17941 6.20041 6.20084 6.32554 7.06924 7.16326 8.75177 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.001994 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.316340 B =14039.586511 C =15935.885677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.092 4.092 4 C -0.103 4.103 5 C 0.057 3.943 6 N -0.547 5.547 7 C 0.022 3.978 8 C 0.065 3.935 9 C -0.072 4.072 10 C -0.120 4.120 11 C 0.109 3.891 12 N -0.606 5.606 13 C 0.531 3.469 14 O -0.570 6.570 15 C -0.123 4.123 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.100 3.900 26 C -0.111 4.111 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.271 0.729 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.049 0.951 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.211 -0.858 1.188 34.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.179 4.179 3 C -0.130 4.130 4 C -0.141 4.141 5 C -0.071 4.071 6 N -0.271 5.271 7 C -0.126 4.126 8 C -0.063 4.063 9 C -0.091 4.091 10 C -0.159 4.159 11 C -0.013 4.013 12 N -0.340 5.340 13 C 0.319 3.681 14 O -0.449 6.449 15 C -0.274 4.274 16 S 0.075 5.925 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.022 4.022 26 C -0.149 4.149 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.068 0.932 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -32.851 0.294 1.320 32.879 hybrid contribution -0.360 -1.059 -0.478 1.216 sum -33.211 -0.764 0.842 33.230 Atomic orbital electron populations 1.24001 0.96050 1.02358 1.01398 1.23074 0.96265 0.98842 0.99715 1.20722 0.98083 0.95293 0.98893 1.21446 0.97286 0.97277 0.98090 1.22161 0.94032 0.97080 0.93836 1.61918 1.19502 1.42772 1.02866 1.22480 0.97848 1.00880 0.91403 1.22095 0.92795 0.91312 1.00116 1.21103 0.93727 0.94020 1.00204 1.21942 0.95316 0.98930 0.99668 1.21673 0.94244 0.86668 0.98685 1.48148 1.06910 1.12482 1.66437 1.20127 0.82459 0.89122 0.76420 1.90663 1.65237 1.34855 1.54121 1.23361 0.99924 0.99105 1.04996 1.85565 1.01583 1.17696 1.87647 1.23163 0.98149 0.95731 1.52430 0.89942 1.26136 0.95519 1.02722 0.94727 1.70183 1.04340 1.33798 1.46410 0.85005 0.77187 0.76663 0.79150 1.18626 1.20351 1.18586 1.22049 0.93363 0.85100 1.01700 1.21782 0.95188 1.00030 0.97867 0.88282 0.87977 0.87247 0.91438 0.90810 0.91613 0.91914 0.94868 0.91013 0.95675 0.90939 0.90923 0.93977 0.91427 0.89870 0.88789 0.92863 0.89758 0.91496 0.87599 0.87736 0.91990 0.89891 0.89397 0.93199 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 14.32 67.78 0.97 -1.01 16 2 C -0.16 -1.71 9.52 25.64 0.24 -1.46 16 3 C -0.09 -0.90 5.66 29.85 0.17 -0.73 16 4 C -0.10 -1.07 5.12 30.60 0.16 -0.91 16 5 C 0.06 0.63 4.94 86.30 0.43 1.06 16 6 N -0.55 -6.67 4.14 -922.42 -3.82 -10.49 16 7 C 0.02 0.22 9.12 127.69 1.16 1.39 16 8 C 0.06 0.82 4.39 86.30 0.38 1.20 16 9 C -0.07 -1.01 2.21 -10.67 -0.02 -1.03 16 10 C -0.12 -2.05 5.39 30.77 0.17 -1.88 16 11 C 0.11 2.55 6.42 86.36 0.55 3.10 16 12 N -0.61 -17.06 2.97 -818.92 -2.43 -19.49 16 13 C 0.53 21.01 7.72 87.66 0.68 21.68 16 14 O -0.57 -27.71 15.27 -3.05 -0.05 -27.76 16 15 C -0.12 -5.13 4.50 71.24 0.32 -4.80 16 16 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 17 C -0.55 -31.72 9.50 67.95 0.65 -31.07 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 21 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 C 0.10 2.05 6.34 86.36 0.55 2.60 16 26 C -0.11 -1.88 5.27 30.67 0.16 -1.72 16 27 H 0.10 0.86 7.84 -2.91 -0.02 0.83 16 28 H 0.10 0.85 8.06 -2.91 -0.02 0.82 16 29 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.07 0.61 7.79 -2.38 -0.02 0.59 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.66 6.59 -2.39 -0.02 0.65 16 34 H 0.03 0.36 8.11 -2.38 -0.02 0.34 16 35 H 0.07 0.85 7.83 -2.39 -0.02 0.83 16 36 H 0.02 0.25 8.13 -2.38 -0.02 0.23 16 37 H 0.07 0.70 6.56 -2.39 -0.02 0.68 16 38 H 0.07 0.70 6.65 -2.39 -0.02 0.69 16 39 H 0.04 0.50 8.00 -2.38 -0.02 0.48 16 40 H 0.07 0.96 7.73 -2.39 -0.02 0.94 16 41 H 0.08 1.05 6.69 -2.39 -0.02 1.04 16 42 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 1.94 7.00 -2.39 -0.02 1.92 16 46 H 0.11 4.02 7.94 -2.39 -0.02 4.00 16 47 H 0.10 4.00 7.69 -2.39 -0.02 3.98 16 48 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 49 H 0.08 1.81 5.93 -2.39 -0.01 1.80 16 50 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.10 1.50 7.73 -2.39 -0.02 1.48 16 Total: -1.00 -75.12 420.41 2.73 -72.39 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.86 Total: 17.85 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 7.02 Total: -12.33 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -5.97 Total: -86.27 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -75.12 2.73 -72.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267597841.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.971 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds