Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99709 * 2 1 4 4 C 1.53004 * 109.46906 * 125.00055 * 3 2 1 5 5 N 1.46895 * 109.47100 * 179.97438 * 4 3 2 6 6 C 1.46895 * 111.00287 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47411 * 174.86839 * 6 5 4 8 8 N 1.46498 * 109.46897 * 185.45303 * 7 6 5 9 9 C 1.34770 * 120.00635 * 304.61442 * 8 7 6 10 10 O 1.21282 * 119.99690 * 354.71209 * 9 8 7 11 11 C 1.50694 * 120.00472 * 174.70499 * 9 8 7 12 12 S 1.81001 * 109.47375 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00283 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99934 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00107 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99954 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99985 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47030 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47451 * 119.99657 * 17 15 13 20 20 H 1.48499 * 109.47121 * 240.00031 * 17 15 13 21 21 C 1.52998 * 109.47211 * 65.45573 * 7 6 5 22 22 C 1.53000 * 109.47211 * 179.97438 * 21 7 6 23 23 C 1.53002 * 109.47167 * 60.00131 * 22 21 7 24 24 C 1.53006 * 109.46829 * 299.99816 * 23 22 21 25 25 C 1.53000 * 109.47096 * 60.00140 * 24 23 22 26 26 H 1.09004 * 109.47384 * 60.00009 * 25 24 23 27 27 C 1.52998 * 109.47211 * 179.97438 * 25 24 23 28 28 H 1.07997 * 120.00416 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99529 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00019 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46957 * 5.00015 * 3 2 1 32 32 H 1.08997 * 109.46857 * 244.99918 * 3 2 1 33 33 H 1.08998 * 109.46697 * 59.99864 * 4 3 2 34 34 H 1.08997 * 109.46989 * 300.00106 * 4 3 2 35 35 H 1.00901 * 110.99801 * 56.04574 * 5 4 3 36 36 H 1.09001 * 109.46830 * 294.86877 * 6 5 4 37 37 H 1.08997 * 109.46998 * 54.86584 * 6 5 4 38 38 H 0.97007 * 119.99703 * 124.61988 * 8 7 6 39 39 H 1.08999 * 109.47466 * 300.00637 * 11 9 8 40 40 H 1.08999 * 109.47074 * 60.00400 * 11 9 8 41 41 H 0.97000 * 120.00239 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46763 * 300.00155 * 21 7 6 43 43 H 1.09003 * 109.46968 * 59.99699 * 21 7 6 44 44 H 1.09000 * 109.46959 * 299.99983 * 22 21 7 45 45 H 1.09003 * 109.46663 * 179.97438 * 22 21 7 46 46 H 1.08996 * 109.47250 * 180.02562 * 23 22 21 47 47 H 1.08996 * 109.47395 * 59.99310 * 23 22 21 48 48 H 1.09000 * 109.47379 * 300.00198 * 24 23 22 49 49 H 1.08994 * 109.47136 * 179.97438 * 24 23 22 50 50 H 1.08996 * 109.47431 * 179.97438 * 27 25 24 51 51 H 1.08994 * 109.47255 * 299.99786 * 27 25 24 52 52 H 1.09000 * 109.47145 * 60.00131 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7699 2.6050 1.1813 6 6 4.7147 2.6675 2.3043 7 6 5.5494 3.9453 2.1982 8 7 6.5779 3.9447 3.2415 9 6 6.2262 3.8024 4.5347 10 8 5.0540 3.7712 4.8443 11 6 7.2893 3.6820 5.5959 12 16 6.5055 3.5037 7.2176 13 6 7.9370 3.3876 8.2383 14 1 8.9210 3.4352 7.7958 15 6 7.8000 3.2351 9.6111 16 7 6.6008 3.1777 10.1505 17 14 9.3177 3.1128 10.6933 18 1 10.5362 3.2045 9.8492 19 1 9.3135 4.2231 11.6793 20 1 9.3102 1.8130 11.4113 21 6 4.6417 5.1638 2.3778 22 6 5.4764 6.4416 2.2723 23 6 6.1451 6.5020 0.8975 24 6 7.0529 5.2835 0.7180 25 6 6.2182 4.0057 0.8235 26 1 5.4531 4.0063 0.0470 27 6 7.1258 2.7872 0.6434 28 1 -0.5401 0.9352 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3584 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5066 1.0920 34 1 2.4772 1.2356 2.1130 35 1 3.1352 3.3893 1.1983 36 1 4.1624 2.6712 3.2441 37 1 5.3735 1.7996 2.2735 38 1 7.5123 4.0469 3.0014 39 1 7.9074 2.8074 5.3934 40 1 7.9121 4.5765 5.5894 41 1 6.5050 3.0707 11.1098 42 1 3.8763 5.1641 1.6016 43 1 4.1656 5.1210 3.3574 44 1 6.2415 6.4409 3.0487 45 1 4.8296 7.3097 2.3998 46 1 6.7402 7.4121 0.8225 47 1 5.3802 6.5026 0.1210 48 1 7.8180 5.2828 1.4944 49 1 7.5290 5.3262 -0.2616 50 1 6.5312 1.8768 0.7189 51 1 7.6018 2.8303 -0.3362 52 1 7.8911 2.7863 1.4195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267868556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -59.848033 kcal Electronic energy + Delta-G solvation = -28443.528513 eV Core-core repulsion = 24760.723920 eV Total energy + Delta-G solvation = -3682.804593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.84851 -39.21081 -37.63870 -35.34469 -34.63886 -34.56900 -33.38870 -32.09806 -30.18901 -29.12926 -27.69359 -27.08473 -25.69390 -23.36443 -22.96206 -21.87245 -21.78576 -20.65245 -19.86206 -19.73430 -17.99328 -17.07802 -16.89836 -16.89193 -16.61778 -16.19729 -15.90422 -15.81275 -15.34143 -15.25335 -15.04693 -14.77552 -14.51264 -14.37154 -14.28269 -13.75614 -13.59818 -13.48280 -13.36803 -13.16588 -12.93348 -12.90880 -12.74964 -12.69467 -12.61040 -12.35474 -12.27424 -11.92448 -11.84365 -11.75874 -11.68471 -11.36910 -11.17013 -11.12241 -10.96640 -10.53202 -10.27140 -10.23595 -9.95246 -9.36234 -8.66201 -8.36035 -6.13076 1.26903 1.39579 1.39681 1.46575 1.57643 1.67711 2.25114 2.32807 2.98122 3.16413 3.35251 3.70164 3.76112 3.84038 3.98575 4.04264 4.17562 4.21690 4.26052 4.29398 4.36231 4.38729 4.46732 4.50512 4.52823 4.59842 4.67734 4.70582 4.77823 4.82068 4.87625 4.92372 4.94311 5.06008 5.12682 5.15754 5.16884 5.20658 5.23777 5.35635 5.40811 5.42420 5.46585 5.53223 5.58327 5.73305 5.75502 5.87011 5.98900 6.18763 6.37997 6.61008 7.05590 7.33247 8.73293 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.002801 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.262584 B = 9994.922603 C =11649.127123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.081 4.081 4 C 0.065 3.935 5 N -0.668 5.668 6 C 0.054 3.946 7 C 0.196 3.804 8 N -0.703 5.703 9 C 0.537 3.463 10 O -0.552 6.552 11 C -0.132 4.132 12 S -0.146 6.146 13 C -0.545 4.545 14 H 0.080 0.920 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.998 3.002 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.128 4.128 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.070 4.070 26 H 0.102 0.898 27 C -0.144 4.144 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.012 0.988 35 H 0.342 0.658 36 H 0.019 0.981 37 H 0.067 0.933 38 H 0.410 0.590 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.271 0.729 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.051 0.949 51 H 0.069 0.931 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 0.798 -27.086 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.182 4.182 3 C -0.119 4.119 4 C -0.065 4.065 5 N -0.300 5.300 6 C -0.076 4.076 7 C 0.110 3.890 8 N -0.358 5.358 9 C 0.322 3.678 10 O -0.429 6.429 11 C -0.283 4.283 12 S 0.081 5.919 13 C -0.693 4.693 14 H 0.099 0.901 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.819 3.181 18 H -0.181 1.181 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.166 4.166 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.089 4.089 26 H 0.120 0.880 27 C -0.201 4.201 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.161 0.839 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.248 0.752 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.070 0.930 51 H 0.088 0.912 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.439 0.498 -26.897 27.120 hybrid contribution 1.528 -0.047 1.782 2.348 sum -1.911 0.451 -25.114 25.191 Atomic orbital electron populations 1.24021 0.96021 1.02480 1.00910 1.23021 0.96299 0.98721 1.00110 1.20635 0.97297 0.95365 0.98590 1.21875 0.95500 0.92395 0.96695 1.60526 1.21039 1.04656 1.43732 1.22182 0.95508 0.97839 0.92099 1.20259 0.87667 0.93434 0.87662 1.45934 1.11278 1.74310 1.04276 1.19924 0.88950 0.75234 0.83672 1.90646 1.20297 1.49973 1.82011 1.23398 1.01314 1.06105 0.97495 1.85511 1.13724 1.95760 0.96892 1.23230 0.93451 1.57845 0.94778 0.90147 1.26115 1.00481 0.93876 0.98710 1.70184 1.24292 1.47714 1.12576 0.84922 0.77424 0.78096 0.77611 1.18098 1.19892 1.19913 1.21909 0.98404 0.94609 1.01682 1.21445 0.98855 0.96676 0.98253 1.21498 0.99125 0.98307 0.95965 1.21669 0.97707 0.93472 1.02542 1.21201 0.98340 0.95251 0.94064 0.87954 1.21817 0.98955 0.97418 1.01957 0.88305 0.87711 0.86941 0.91412 0.89392 0.91115 0.96997 0.83938 0.96266 0.91485 0.75187 0.87815 0.87838 0.92027 0.89838 0.93837 0.93743 0.92335 0.91416 0.90915 0.92419 0.89914 0.93010 0.91195 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.83 14.32 67.78 0.97 -1.86 16 2 C -0.16 -2.47 9.52 25.65 0.24 -2.22 16 3 C -0.08 -1.22 5.92 29.85 0.18 -1.04 16 4 C 0.06 1.24 5.66 86.31 0.49 1.73 16 5 N -0.67 -12.92 5.46 -513.91 -2.80 -15.73 16 6 C 0.05 1.37 3.88 86.30 0.33 1.70 16 7 C 0.20 4.32 0.17 3.60 0.00 4.32 16 8 N -0.70 -17.84 3.73 -422.94 -1.58 -19.41 16 9 C 0.54 19.47 7.26 87.66 0.64 20.11 16 10 O -0.55 -24.49 12.17 -3.04 -0.04 -24.52 16 11 C -0.13 -5.27 6.16 71.23 0.44 -4.83 16 12 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 13 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 14 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 15 C 0.01 0.74 5.49 84.86 0.47 1.20 16 16 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 17 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C -0.13 -3.03 4.36 30.59 0.13 -2.89 16 22 C -0.11 -2.42 5.77 30.59 0.18 -2.24 16 23 C -0.11 -1.65 5.92 30.60 0.18 -1.47 16 24 C -0.12 -1.58 5.03 30.60 0.15 -1.43 16 25 C -0.07 -1.09 1.79 -10.79 -0.02 -1.11 16 26 H 0.10 1.56 7.46 -2.38 -0.02 1.54 16 27 C -0.14 -2.17 8.67 71.98 0.62 -1.54 16 28 H 0.10 1.32 7.84 -2.91 -0.02 1.30 16 29 H 0.10 1.29 8.06 -2.91 -0.02 1.27 16 30 H 0.11 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.07 0.98 7.79 -2.39 -0.02 0.96 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.34 6.31 7.19 -89.69 -0.65 5.67 16 36 H 0.02 0.66 6.21 -2.39 -0.01 0.64 16 37 H 0.07 1.76 6.72 -2.39 -0.02 1.74 16 38 H 0.41 8.29 6.18 -92.70 -0.57 7.72 16 39 H 0.10 3.81 8.14 -2.40 -0.02 3.79 16 40 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.08 1.64 6.81 -2.38 -0.02 1.63 16 43 H 0.04 1.41 6.33 -2.39 -0.02 1.40 16 44 H 0.04 1.10 7.60 -2.39 -0.02 1.08 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.82 6.77 -2.39 -0.02 0.81 16 49 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.05 0.91 6.56 -2.39 -0.02 0.89 16 51 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.05 0.75 6.96 -2.39 -0.02 0.73 16 Total: -1.00 -72.22 409.52 2.06 -70.15 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.32 Total: 31.10 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 5.65 Total: -22.29 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -4.09 Total: -91.13 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.04 Total: -24.52 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -72.22 2.06 -70.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267868556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.305 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds