Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99769 * 2 1 4 4 C 1.53000 * 109.47146 * 125.00236 * 3 2 1 5 5 N 1.46896 * 109.47102 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99854 * 179.97438 * 5 4 3 7 7 C 1.53009 * 109.46870 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47201 * 54.69414 * 7 6 5 9 9 C 1.34784 * 120.00001 * 61.75917 * 8 7 6 10 10 O 1.21279 * 120.00014 * 355.34921 * 9 8 7 11 11 C 1.50695 * 119.99736 * 175.34849 * 9 8 7 12 12 S 1.81003 * 109.47114 * 180.02562 * 11 9 8 13 13 C 1.76201 * 100.00354 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00087 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99876 * 0.26428 * 15 13 12 17 17 Si 1.86804 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47189 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46965 * 119.99833 * 17 15 13 20 20 H 1.48497 * 109.46754 * 239.99323 * 17 15 13 21 21 C 1.52999 * 109.46863 * 294.69150 * 7 6 5 22 22 C 1.53001 * 109.46630 * 180.02562 * 21 7 6 23 23 C 1.52997 * 109.46992 * 60.00517 * 22 21 7 24 24 C 1.52994 * 109.47067 * 299.99591 * 23 22 21 25 25 C 1.52997 * 109.47136 * 60.00118 * 24 23 22 26 26 H 1.09001 * 109.46819 * 179.97438 * 25 24 23 27 27 C 1.53002 * 109.46959 * 60.00377 * 25 24 23 28 28 H 1.08002 * 119.99918 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99825 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00232 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47320 * 4.99874 * 3 2 1 32 32 H 1.09005 * 109.47245 * 244.99960 * 3 2 1 33 33 H 1.08992 * 109.47447 * 59.99640 * 4 3 2 34 34 H 1.09009 * 109.46704 * 299.99495 * 4 3 2 35 35 H 1.00905 * 111.00306 * 303.94912 * 5 4 3 36 36 H 1.08996 * 109.47139 * 60.00026 * 6 5 4 37 37 H 1.08994 * 109.47162 * 299.99389 * 6 5 4 38 38 H 0.96998 * 120.00045 * 241.75813 * 8 7 6 39 39 H 1.09005 * 109.47352 * 60.00528 * 11 9 8 40 40 H 1.09002 * 109.47840 * 299.99981 * 11 9 8 41 41 H 0.97001 * 119.99975 * 359.73853 * 16 15 13 42 42 H 1.09002 * 109.47392 * 300.00029 * 21 7 6 43 43 H 1.08998 * 109.46992 * 60.00472 * 21 7 6 44 44 H 1.08990 * 109.47856 * 299.99998 * 22 21 7 45 45 H 1.09007 * 109.47115 * 179.97438 * 22 21 7 46 46 H 1.09008 * 109.47255 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47487 * 59.99736 * 23 22 21 48 48 H 1.08999 * 109.47272 * 299.99907 * 24 23 22 49 49 H 1.09009 * 109.47254 * 180.02562 * 24 23 22 50 50 H 1.09001 * 109.46907 * 299.99397 * 27 25 24 51 51 H 1.08998 * 109.47563 * 59.99811 * 27 25 24 52 52 H 1.09000 * 109.46651 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 7 3.7690 2.6056 1.1819 6 6 4.7131 2.6684 2.3057 7 6 5.4575 4.0048 2.2722 8 7 4.4884 5.1033 2.2538 9 6 3.6344 5.2658 3.2838 10 8 3.6103 4.4550 4.1853 11 6 2.7095 6.4552 3.3151 12 16 1.6957 6.3919 4.8133 13 6 0.7378 7.8548 4.5966 14 1 0.8867 8.4734 3.7241 15 6 -0.2075 8.2125 5.5479 16 7 -0.3846 7.4617 6.6145 17 14 -1.2226 9.7639 5.3186 18 1 -0.8294 10.4298 4.0509 19 1 -2.6636 9.4091 5.2657 20 1 -0.9813 10.6860 6.4572 21 6 6.3285 4.0720 1.0162 22 6 7.0734 5.4080 0.9831 23 6 7.9589 5.5291 2.2249 24 6 7.0879 5.4619 3.4809 25 6 6.3430 4.1259 3.5140 26 1 5.7228 4.0779 4.4091 27 6 7.3547 2.9782 3.5330 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4027 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4771 1.2357 2.1130 35 1 4.2428 2.7501 0.3028 36 1 5.4299 1.8515 2.2241 37 1 4.1666 2.5800 3.2446 38 1 4.4614 5.7136 1.5004 39 1 2.0631 6.4360 2.4376 40 1 3.2974 7.3730 3.3133 41 1 0.1428 6.6564 6.7338 42 1 7.0496 3.2546 1.0299 43 1 5.6977 3.9852 0.1315 44 1 6.3528 6.2256 0.9696 45 1 7.6944 5.4558 0.0885 46 1 8.4900 6.4808 2.2011 47 1 8.6797 4.7115 2.2384 48 1 6.3672 6.2795 3.4675 49 1 7.7187 5.5486 4.3656 50 1 7.9752 3.0261 2.6381 51 1 7.9856 3.0645 4.4177 52 1 6.8239 2.0265 3.5561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267868557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -43.079912 kcal Electronic energy + Delta-G solvation = -28763.904943 eV Core-core repulsion = 25081.827470 eV Total energy + Delta-G solvation = -3682.077473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85656 -37.92658 -36.88851 -34.63169 -33.31855 -32.47350 -32.31740 -31.01703 -28.89863 -28.62350 -26.22828 -24.83746 -24.75723 -22.75060 -22.03372 -21.38146 -20.43652 -19.88320 -18.29939 -18.15897 -16.76333 -16.49905 -16.04276 -15.45117 -15.18552 -15.07554 -14.63082 -14.44176 -14.21850 -13.90254 -13.83462 -13.71291 -13.36612 -13.22769 -12.98840 -12.82304 -12.69201 -12.38812 -12.28898 -12.04382 -11.84040 -11.80119 -11.79419 -11.58022 -11.40489 -11.22871 -11.11777 -11.05651 -10.86727 -10.47551 -10.26757 -10.17860 -10.14399 -9.50687 -9.49626 -9.07957 -8.96013 -8.63180 -8.38791 -8.13951 -6.58408 -6.57143 -3.93228 2.11668 3.05326 3.22079 3.38077 3.43271 3.55644 3.72000 4.05893 4.29601 4.44904 4.54868 4.59098 4.82395 4.95663 4.96965 4.99276 5.06841 5.10162 5.19104 5.20386 5.24967 5.27611 5.28595 5.38756 5.43510 5.46941 5.49912 5.53861 5.67813 5.68332 5.74645 5.77582 5.83311 5.88041 5.90458 5.93856 5.96054 5.98799 6.05306 6.13936 6.16233 6.23605 6.33098 6.43623 6.46837 6.61416 6.82867 6.98075 7.35597 7.88926 7.99033 8.55677 8.76331 9.32684 10.86997 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007736 B = 0.003691 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.754086 B = 7584.775049 C =10256.943709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C -0.091 4.091 4 C 0.066 3.934 5 N -0.680 5.680 6 C 0.047 3.953 7 C 0.196 3.804 8 N -0.712 5.712 9 C 0.542 3.458 10 O -0.519 6.519 11 C -0.130 4.130 12 S -0.115 6.115 13 C -0.606 4.606 14 H 0.065 0.935 15 C 0.035 3.965 16 N -0.887 5.887 17 Si 1.089 2.911 18 H -0.288 1.288 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.104 4.104 26 H 0.096 0.904 27 C -0.148 4.148 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.331 0.669 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.395 0.605 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.278 0.722 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.839 -10.767 -15.968 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.175 4.175 3 C -0.129 4.129 4 C -0.063 4.063 5 N -0.310 5.310 6 C -0.083 4.083 7 C 0.109 3.891 8 N -0.365 5.365 9 C 0.328 3.672 10 O -0.394 6.394 11 C -0.281 4.281 12 S 0.111 5.889 13 C -0.754 4.754 14 H 0.083 0.917 15 C -0.175 4.175 16 N -0.522 5.522 17 Si 0.915 3.085 18 H -0.214 1.214 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.163 4.163 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.149 4.149 25 C -0.123 4.123 26 H 0.114 0.886 27 C -0.205 4.205 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.229 0.771 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.132 -10.862 -13.420 22.311 hybrid contribution 1.803 -0.207 -2.576 3.151 sum 15.935 -11.069 -15.996 25.146 Atomic orbital electron populations 1.23909 0.96009 1.01999 1.00676 1.22870 0.96082 0.98202 1.00334 1.20717 0.98556 0.95759 0.97859 1.21860 0.95580 0.89563 0.99279 1.60328 1.30751 1.34240 1.05728 1.22498 0.94085 0.95155 0.96525 1.20140 0.87506 0.86563 0.94897 1.45779 1.36417 1.31685 1.22628 1.19998 0.79587 0.86233 0.81334 1.90602 1.67885 1.43814 1.37139 1.23306 1.00663 0.98504 1.05629 1.84753 1.44647 1.35506 1.23974 1.23778 1.27169 1.10784 1.13678 0.91697 1.26015 0.96139 1.03346 0.92027 1.70733 1.39937 1.14825 1.26661 0.83269 0.75768 0.73872 0.75572 1.21436 1.20930 1.20943 1.21877 0.98607 0.98824 0.97027 1.21503 0.98781 0.97241 0.97983 1.21571 0.97928 1.01483 0.94753 1.21492 0.98516 0.97514 0.97350 1.21472 0.96386 0.95053 0.99423 0.88572 1.21968 0.98851 0.98035 1.01681 0.88613 0.88303 0.87717 0.90421 0.91516 0.95733 0.90714 0.85103 0.95078 0.88370 0.77094 0.89304 0.89527 0.90940 0.90542 0.91366 0.91744 0.92007 0.92255 0.91892 0.91687 0.92118 0.92443 0.92614 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 14.32 29.02 0.42 -1.40 16 2 C -0.16 -1.49 9.52 -36.02 -0.34 -1.83 16 3 C -0.09 -0.91 5.92 -27.88 -0.16 -1.08 16 4 C 0.07 0.73 5.67 -3.83 -0.02 0.71 16 5 N -0.68 -7.72 6.22 -113.78 -0.71 -8.43 16 6 C 0.05 0.57 3.86 -3.82 -0.01 0.56 16 7 C 0.20 2.17 0.20 -131.82 -0.03 2.14 16 8 N -0.71 -9.25 3.73 -47.61 -0.18 -9.43 16 9 C 0.54 9.83 7.26 -10.98 -0.08 9.75 16 10 O -0.52 -11.07 12.16 5.56 0.07 -11.00 16 11 C -0.13 -2.67 6.16 36.00 0.22 -2.45 16 12 S -0.12 -3.12 19.60 -107.50 -2.11 -5.23 16 13 C -0.61 -17.72 9.50 30.94 0.29 -17.42 16 14 H 0.06 1.84 7.80 -52.49 -0.41 1.43 16 15 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 16 N -0.89 -27.91 13.67 55.49 0.76 -27.15 16 17 Si 1.09 25.43 29.92 -169.99 -5.09 20.35 16 18 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.13 -1.02 4.28 -26.73 -0.11 -1.13 16 22 C -0.12 -0.92 5.75 -26.73 -0.15 -1.07 16 23 C -0.12 -1.03 5.65 -26.74 -0.15 -1.18 16 24 C -0.11 -1.23 5.29 -26.74 -0.14 -1.37 16 25 C -0.10 -1.23 2.01 -90.62 -0.18 -1.41 16 26 H 0.10 1.52 6.21 -51.93 -0.32 1.20 16 27 C -0.15 -1.42 8.15 37.16 0.30 -1.12 16 28 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.10 0.98 7.84 -52.49 -0.41 0.57 16 30 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.08 0.90 7.79 -51.93 -0.40 0.49 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.33 3.10 7.00 -39.29 -0.27 2.83 16 36 H 0.03 0.34 6.72 -51.93 -0.35 -0.01 16 37 H 0.10 1.59 6.31 -51.93 -0.33 1.26 16 38 H 0.39 4.37 7.38 -40.82 -0.30 4.07 16 39 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 40 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 41 H 0.28 8.94 7.12 -40.82 -0.29 8.65 16 42 H 0.08 0.57 6.43 -51.93 -0.33 0.23 16 43 H 0.07 0.50 6.68 -51.93 -0.35 0.16 16 44 H 0.06 0.53 6.90 -51.93 -0.36 0.18 16 45 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 47 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 48 H 0.06 0.84 7.61 -51.93 -0.39 0.44 16 49 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 50 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 51 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.05 0.53 6.55 -51.93 -0.34 0.19 16 LS Contribution 404.60 15.07 6.10 6.10 Total: -1.00 -33.46 404.60 -10.31 -43.76 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -8.90 Total: 8.40 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.25 Total: -17.37 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.13 Total: -45.00 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.35 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.46 -10.31 -43.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267868557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.683 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds