Wall clock time and date at job start Sat Apr 11 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99769 * 2 1 4 4 C 1.53000 * 109.47146 * 125.00236 * 3 2 1 5 5 N 1.46896 * 109.47102 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99854 * 179.97438 * 5 4 3 7 7 C 1.53009 * 109.46870 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47201 * 54.69414 * 7 6 5 9 9 C 1.34784 * 120.00001 * 61.75917 * 8 7 6 10 10 O 1.21279 * 120.00014 * 355.34921 * 9 8 7 11 11 C 1.50695 * 119.99736 * 175.34849 * 9 8 7 12 12 S 1.81003 * 109.47114 * 180.02562 * 11 9 8 13 13 C 1.76201 * 100.00354 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00087 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99876 * 0.26428 * 15 13 12 17 17 Si 1.86804 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47189 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46965 * 119.99833 * 17 15 13 20 20 H 1.48497 * 109.46754 * 239.99323 * 17 15 13 21 21 C 1.52999 * 109.46863 * 294.69150 * 7 6 5 22 22 C 1.53001 * 109.46630 * 180.02562 * 21 7 6 23 23 C 1.52997 * 109.46992 * 60.00517 * 22 21 7 24 24 C 1.52994 * 109.47067 * 299.99591 * 23 22 21 25 25 C 1.52997 * 109.47136 * 60.00118 * 24 23 22 26 26 H 1.09001 * 109.46819 * 179.97438 * 25 24 23 27 27 C 1.53002 * 109.46959 * 60.00377 * 25 24 23 28 28 H 1.08002 * 119.99918 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99825 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00232 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47320 * 4.99874 * 3 2 1 32 32 H 1.09005 * 109.47245 * 244.99960 * 3 2 1 33 33 H 1.08992 * 109.47447 * 59.99640 * 4 3 2 34 34 H 1.09009 * 109.46704 * 299.99495 * 4 3 2 35 35 H 1.00905 * 111.00306 * 303.94912 * 5 4 3 36 36 H 1.08996 * 109.47139 * 60.00026 * 6 5 4 37 37 H 1.08994 * 109.47162 * 299.99389 * 6 5 4 38 38 H 0.96998 * 120.00045 * 241.75813 * 8 7 6 39 39 H 1.09005 * 109.47352 * 60.00528 * 11 9 8 40 40 H 1.09002 * 109.47840 * 299.99981 * 11 9 8 41 41 H 0.97001 * 119.99975 * 359.73853 * 16 15 13 42 42 H 1.09002 * 109.47392 * 300.00029 * 21 7 6 43 43 H 1.08998 * 109.46992 * 60.00472 * 21 7 6 44 44 H 1.08990 * 109.47856 * 299.99998 * 22 21 7 45 45 H 1.09007 * 109.47115 * 179.97438 * 22 21 7 46 46 H 1.09008 * 109.47255 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47487 * 59.99736 * 23 22 21 48 48 H 1.08999 * 109.47272 * 299.99907 * 24 23 22 49 49 H 1.09009 * 109.47254 * 180.02562 * 24 23 22 50 50 H 1.09001 * 109.46907 * 299.99397 * 27 25 24 51 51 H 1.08998 * 109.47563 * 59.99811 * 27 25 24 52 52 H 1.09000 * 109.46651 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 7 3.7690 2.6056 1.1819 6 6 4.7131 2.6684 2.3057 7 6 5.4575 4.0048 2.2722 8 7 4.4884 5.1033 2.2538 9 6 3.6344 5.2658 3.2838 10 8 3.6103 4.4550 4.1853 11 6 2.7095 6.4552 3.3151 12 16 1.6957 6.3919 4.8133 13 6 0.7378 7.8548 4.5966 14 1 0.8867 8.4734 3.7241 15 6 -0.2075 8.2125 5.5479 16 7 -0.3846 7.4617 6.6145 17 14 -1.2226 9.7639 5.3186 18 1 -0.8294 10.4298 4.0509 19 1 -2.6636 9.4091 5.2657 20 1 -0.9813 10.6860 6.4572 21 6 6.3285 4.0720 1.0162 22 6 7.0734 5.4080 0.9831 23 6 7.9589 5.5291 2.2249 24 6 7.0879 5.4619 3.4809 25 6 6.3430 4.1259 3.5140 26 1 5.7228 4.0779 4.4091 27 6 7.3547 2.9782 3.5330 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4027 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4771 1.2357 2.1130 35 1 4.2428 2.7501 0.3028 36 1 5.4299 1.8515 2.2241 37 1 4.1666 2.5800 3.2446 38 1 4.4614 5.7136 1.5004 39 1 2.0631 6.4360 2.4376 40 1 3.2974 7.3730 3.3133 41 1 0.1428 6.6564 6.7338 42 1 7.0496 3.2546 1.0299 43 1 5.6977 3.9852 0.1315 44 1 6.3528 6.2256 0.9696 45 1 7.6944 5.4558 0.0885 46 1 8.4900 6.4808 2.2011 47 1 8.6797 4.7115 2.2384 48 1 6.3672 6.2795 3.4675 49 1 7.7187 5.5486 4.3656 50 1 7.9752 3.0261 2.6381 51 1 7.9856 3.0645 4.4177 52 1 6.8239 2.0265 3.5561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267868557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:06 Heat of formation + Delta-G solvation = -64.641350 kcal Electronic energy + Delta-G solvation = -28764.839917 eV Core-core repulsion = 25081.827470 eV Total energy + Delta-G solvation = -3683.012447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.90966 -39.23432 -37.75386 -35.50630 -34.74485 -34.49123 -33.08947 -32.07520 -30.34059 -29.44452 -27.29490 -26.90341 -25.69116 -23.59266 -22.84643 -22.45458 -21.62050 -20.65805 -20.40236 -19.21569 -18.08920 -17.45150 -17.09131 -16.70650 -16.40331 -16.13458 -16.00319 -15.74762 -15.39903 -15.24332 -14.96491 -14.72312 -14.56964 -14.39616 -14.21762 -13.93683 -13.88524 -13.70049 -13.50847 -13.40430 -13.02221 -12.76446 -12.75156 -12.66868 -12.47082 -12.29220 -12.04765 -11.95030 -11.93827 -11.86994 -11.53052 -11.27236 -11.12481 -11.10982 -11.07285 -10.43739 -10.29275 -10.26744 -9.82264 -9.30568 -8.92596 -8.83099 -6.25776 1.26708 1.35734 1.51167 1.60841 1.74446 1.77659 2.31457 2.37110 3.02634 3.14187 3.17528 3.59222 3.73174 3.83256 4.00864 4.03330 4.14154 4.16434 4.20782 4.20831 4.26663 4.36066 4.40392 4.42448 4.46771 4.47868 4.55426 4.60894 4.66021 4.74396 4.81237 4.89276 4.96898 4.98583 5.04923 5.08408 5.13237 5.13780 5.19772 5.24595 5.34785 5.41383 5.46521 5.55502 5.64672 5.70573 5.75131 5.86179 6.02587 6.15320 6.57329 6.66541 7.06912 7.39471 8.51031 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007736 B = 0.003691 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.754086 B = 7584.775049 C =10256.943709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.085 4.085 4 C 0.071 3.929 5 N -0.689 5.689 6 C 0.054 3.946 7 C 0.196 3.804 8 N -0.688 5.688 9 C 0.544 3.456 10 O -0.556 6.556 11 C -0.109 4.109 12 S -0.190 6.190 13 C -0.614 4.614 14 H 0.071 0.929 15 C -0.018 4.018 16 N -0.914 5.914 17 Si 1.140 2.860 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.111 4.111 25 C -0.104 4.104 26 H 0.046 0.954 27 C -0.142 4.142 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.348 0.652 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.408 0.592 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.260 0.740 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.040 0.960 49 H 0.054 0.946 50 H 0.083 0.917 51 H 0.055 0.945 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.837 -10.451 -19.519 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.178 4.178 3 C -0.122 4.122 4 C -0.058 4.058 5 N -0.322 5.322 6 C -0.076 4.076 7 C 0.109 3.891 8 N -0.340 5.340 9 C 0.329 3.671 10 O -0.434 6.434 11 C -0.261 4.261 12 S 0.037 5.963 13 C -0.761 4.761 14 H 0.089 0.911 15 C -0.221 4.221 16 N -0.550 5.550 17 Si 0.959 3.041 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.124 4.124 26 H 0.065 0.935 27 C -0.199 4.199 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.168 0.832 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.245 0.755 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.073 0.927 50 H 0.102 0.898 51 H 0.074 0.926 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.178 -10.555 -17.029 25.751 hybrid contribution 1.272 -0.369 -1.491 1.994 sum 17.450 -10.924 -18.521 27.692 Atomic orbital electron populations 1.24033 0.96350 1.02277 1.01012 1.23020 0.96136 0.98634 0.99996 1.20651 0.98032 0.95330 0.98224 1.21768 0.95813 0.90084 0.98156 1.60226 1.30939 1.34741 1.06251 1.22302 0.94035 0.96405 0.94814 1.20341 0.87091 0.85042 0.96582 1.45566 1.35054 1.32120 1.21228 1.19640 0.80100 0.85182 0.82206 1.90617 1.69125 1.44800 1.38890 1.23227 1.00323 1.00604 1.01951 1.84970 1.46531 1.35709 1.29100 1.24096 1.27227 1.11002 1.13810 0.91111 1.27809 0.97219 1.05959 0.91151 1.70858 1.40734 1.15091 1.28273 0.82669 0.74515 0.70084 0.76881 1.18829 1.19919 1.19897 1.21883 0.98502 0.99910 0.95203 1.21528 0.98802 0.96594 0.98461 1.21550 0.97716 1.02506 0.93395 1.21474 0.98294 0.96017 0.99058 1.21393 0.96555 0.96706 0.97720 0.93502 1.21928 0.98334 0.96651 1.02982 0.87237 0.89306 0.86040 0.92533 0.89410 0.93939 0.94087 0.83210 0.93090 0.93105 0.75492 0.88179 0.88086 0.92875 0.88633 0.89729 0.92332 0.89481 0.91609 0.90406 0.94086 0.92686 0.89819 0.92631 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.16 -2.86 9.52 25.65 0.24 -2.62 16 3 C -0.08 -1.60 5.92 29.85 0.18 -1.42 16 4 C 0.07 1.52 5.67 86.30 0.49 2.01 16 5 N -0.69 -14.81 6.22 -513.89 -3.19 -18.01 16 6 C 0.05 1.30 3.86 86.31 0.33 1.63 16 7 C 0.20 4.08 0.20 3.61 0.00 4.08 16 8 N -0.69 -17.43 3.73 -422.92 -1.58 -19.01 16 9 C 0.54 20.30 7.26 87.65 0.64 20.93 16 10 O -0.56 -25.30 12.16 -3.03 -0.04 -25.33 16 11 C -0.11 -4.57 6.16 71.23 0.44 -4.14 16 12 S -0.19 -10.77 19.60 -56.49 -1.11 -11.88 16 13 C -0.61 -36.49 9.50 67.95 0.65 -35.85 16 14 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 15 C -0.02 -1.09 5.49 84.86 0.47 -0.63 16 16 N -0.91 -59.27 13.67 21.65 0.30 -58.97 16 17 Si 1.14 50.72 29.92 68.60 2.05 52.78 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.12 -1.43 4.28 30.59 0.13 -1.30 16 22 C -0.12 -1.34 5.75 30.59 0.18 -1.16 16 23 C -0.11 -1.60 5.65 30.59 0.17 -1.43 16 24 C -0.11 -2.39 5.29 30.59 0.16 -2.22 16 25 C -0.10 -2.46 2.01 -10.79 -0.02 -2.48 16 26 H 0.05 1.60 6.21 -2.39 -0.01 1.58 16 27 C -0.14 -2.50 8.15 71.98 0.59 -1.92 16 28 H 0.11 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.09 1.82 7.84 -2.91 -0.02 1.79 16 30 H 0.12 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.06 1.30 7.79 -2.39 -0.02 1.29 16 32 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.35 5.44 7.00 -89.69 -0.63 4.81 16 36 H 0.05 1.01 6.72 -2.39 -0.02 0.99 16 37 H 0.05 1.74 6.31 -2.39 -0.02 1.73 16 38 H 0.41 8.23 7.38 -92.71 -0.68 7.54 16 39 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 40 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.26 17.59 7.12 -92.71 -0.66 16.93 16 42 H 0.10 0.91 6.43 -2.39 -0.02 0.89 16 43 H 0.08 0.83 6.68 -2.39 -0.02 0.81 16 44 H 0.06 0.76 6.90 -2.39 -0.02 0.75 16 45 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.08 0.89 6.43 -2.39 -0.02 0.88 16 48 H 0.04 1.06 7.61 -2.39 -0.02 1.04 16 49 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 50 H 0.08 1.04 4.81 -2.39 -0.01 1.03 16 51 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 52 H 0.05 0.95 6.55 -2.39 -0.02 0.94 16 Total: -1.00 -78.25 404.60 1.75 -76.50 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.29 Total: 33.21 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 5.61 Total: -29.30 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -4.48 Total: -95.98 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.04 Total: -25.33 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.78 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.11 Total: -11.88 kcal Total: -78.25 1.75 -76.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267868557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.863 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds