Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00132 * 2 1 4 4 C 1.52997 * 109.47144 * 124.99940 * 3 2 1 5 5 N 1.46903 * 109.47143 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00417 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47377 * 174.02285 * 6 5 4 8 8 N 1.46496 * 109.47059 * 301.87268 * 7 6 5 9 9 C 1.34772 * 120.00058 * 67.13274 * 8 7 6 10 10 O 1.21279 * 120.00213 * 355.83333 * 9 8 7 11 11 C 1.50703 * 120.00019 * 175.83016 * 9 8 7 12 12 S 1.81001 * 109.47159 * 179.97438 * 11 9 8 13 13 C 1.76203 * 99.99912 * 180.02562 * 12 11 9 14 14 H 1.07995 * 119.99875 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99732 * 180.02562 * 13 12 11 16 16 N 1.31630 * 119.99955 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 179.72508 * 15 13 12 18 18 H 1.48497 * 109.47118 * 180.27407 * 17 15 13 19 19 H 1.48502 * 109.46703 * 300.27316 * 17 15 13 20 20 H 1.48506 * 109.47154 * 60.27081 * 17 15 13 21 21 C 1.52998 * 109.47335 * 61.87227 * 7 6 5 22 22 C 1.52996 * 109.47335 * 179.97438 * 21 7 6 23 23 C 1.53004 * 109.47028 * 300.00098 * 22 21 7 24 24 C 1.52998 * 109.47143 * 59.99784 * 23 22 21 25 25 C 1.52996 * 109.47335 * 300.00027 * 24 23 22 26 26 H 1.08997 * 109.47084 * 300.00224 * 25 24 23 27 27 C 1.52998 * 109.47335 * 179.97438 * 25 24 23 28 28 H 1.07994 * 119.99505 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00135 * 180.02562 * 1 2 3 30 30 H 1.08009 * 119.99664 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47053 * 4.99572 * 3 2 1 32 32 H 1.09003 * 109.46710 * 244.99458 * 3 2 1 33 33 H 1.09008 * 109.47475 * 59.99946 * 4 3 2 34 34 H 1.08998 * 109.47378 * 299.99430 * 4 3 2 35 35 H 1.00905 * 110.99648 * 56.04264 * 5 4 3 36 36 H 1.09004 * 109.46842 * 54.02020 * 6 5 4 37 37 H 1.09005 * 109.47150 * 294.02277 * 6 5 4 38 38 H 0.97000 * 120.00055 * 247.13346 * 8 7 6 39 39 H 1.09001 * 109.47209 * 60.00236 * 11 9 8 40 40 H 1.08999 * 109.47482 * 300.00240 * 11 9 8 41 41 H 0.96996 * 120.00093 * 359.72455 * 16 15 13 42 42 H 1.09002 * 109.46897 * 300.00195 * 21 7 6 43 43 H 1.09006 * 109.47019 * 60.00032 * 21 7 6 44 44 H 1.08994 * 109.47155 * 180.02562 * 22 21 7 45 45 H 1.08997 * 109.47084 * 59.99776 * 22 21 7 46 46 H 1.08997 * 109.46925 * 299.99775 * 23 22 21 47 47 H 1.08997 * 109.46735 * 179.97438 * 23 22 21 48 48 H 1.09002 * 109.46897 * 179.97438 * 24 23 22 49 49 H 1.09006 * 109.47019 * 59.99996 * 24 23 22 50 50 H 1.09006 * 109.47019 * 299.99968 * 27 25 24 51 51 H 1.09002 * 109.46897 * 59.99805 * 27 25 24 52 52 H 1.08995 * 109.47385 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7700 2.6050 1.1813 6 6 4.7141 2.6679 2.3050 7 6 5.5633 3.9351 2.1873 8 7 6.2727 3.9303 0.9056 9 6 5.5827 4.0406 -0.2469 10 8 4.3704 4.0677 -0.2277 11 6 6.3177 4.1302 -1.5595 12 16 5.1227 4.2680 -2.9119 13 6 6.2233 4.3533 -4.2852 14 1 7.2906 4.3148 -4.1250 15 6 5.7186 4.4701 -5.5729 16 7 4.4176 4.5166 -5.7682 17 14 6.8855 4.5683 -7.0282 18 1 6.1020 4.6946 -8.2834 19 1 7.7691 5.7520 -6.8751 20 1 7.7132 3.3365 -7.0830 21 6 4.6570 5.1654 2.2640 22 6 5.5063 6.4326 2.1470 23 6 6.5206 6.4742 3.2917 24 6 7.4269 5.2439 3.2151 25 6 6.5776 3.9767 3.3321 26 1 6.0494 3.9801 4.2855 27 6 7.4838 2.7464 3.2548 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3587 2.1315 0.0895 32 1 2.6214 1.4024 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2356 2.1130 35 1 3.1354 3.3893 1.1982 36 1 5.3630 1.7923 2.2838 37 1 4.1606 2.6873 3.2438 38 1 7.2390 3.8477 0.8864 39 1 6.9223 3.2341 -1.6993 40 1 6.9643 5.0077 -1.5547 41 1 3.8117 4.4653 -5.0125 42 1 3.9341 5.1354 1.4487 43 1 4.1292 5.1690 3.2177 44 1 4.8607 7.3090 2.2021 45 1 6.0345 6.4292 1.1935 46 1 5.9924 6.4776 4.2452 47 1 7.1259 7.3768 3.2081 48 1 8.1498 5.2738 4.0304 49 1 7.9551 5.2406 2.2616 50 1 8.0117 2.7433 2.3011 51 1 8.2067 2.7759 4.0701 52 1 6.8788 1.8436 3.3377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267868558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -38.199956 kcal Electronic energy + Delta-G solvation = -29215.753306 eV Core-core repulsion = 25533.887444 eV Total energy + Delta-G solvation = -3681.865862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76282 -38.82018 -37.59597 -35.33636 -34.70516 -34.41347 -33.41706 -32.00115 -30.04649 -29.24313 -27.23913 -26.96032 -25.63064 -23.45019 -22.64164 -21.90874 -21.54743 -20.65399 -20.34817 -19.83594 -17.97374 -17.33947 -16.70161 -16.59241 -16.29455 -15.97759 -15.71477 -15.61999 -15.39614 -15.17619 -14.84826 -14.66686 -14.62328 -14.27855 -14.14490 -13.98725 -13.80664 -13.54820 -13.37916 -13.20771 -12.94425 -12.75900 -12.70700 -12.56821 -12.36436 -12.28386 -11.95589 -11.94377 -11.86485 -11.77860 -11.48453 -11.40230 -11.06607 -11.00531 -10.92871 -10.29586 -10.22875 -10.16471 -9.79844 -8.88448 -8.74704 -8.70343 -6.19273 1.36029 1.36925 1.54291 1.59801 1.80409 2.05065 2.37879 2.49992 3.05635 3.21740 3.31495 3.72726 3.78060 3.80866 3.97466 4.11328 4.15218 4.19937 4.29952 4.32929 4.34803 4.38033 4.46329 4.48933 4.49685 4.56149 4.62150 4.66232 4.69246 4.71537 4.86759 4.89367 4.91772 5.00221 5.11449 5.13156 5.17365 5.20221 5.21638 5.31405 5.33493 5.45659 5.50220 5.55952 5.67069 5.70013 5.86252 5.89708 6.19845 6.33585 6.67260 6.84927 7.10516 7.69234 8.55295 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.004113 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.865188 B = 6806.827285 C = 9435.057379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C -0.084 4.084 4 C 0.071 3.929 5 N -0.667 5.667 6 C 0.052 3.948 7 C 0.197 3.803 8 N -0.704 5.704 9 C 0.534 3.466 10 O -0.493 6.493 11 C -0.110 4.110 12 S -0.173 6.173 13 C -0.618 4.618 14 H 0.066 0.934 15 C -0.017 4.017 16 N -0.914 5.914 17 Si 1.132 2.868 18 H -0.279 1.279 19 H -0.265 1.265 20 H -0.265 1.265 21 C -0.134 4.134 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.082 4.082 26 H 0.095 0.905 27 C -0.149 4.149 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.345 0.655 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.401 0.599 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.052 0.948 51 H 0.073 0.927 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 -3.569 24.352 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.177 4.177 3 C -0.122 4.122 4 C -0.058 4.058 5 N -0.303 5.303 6 C -0.078 4.078 7 C 0.110 3.890 8 N -0.359 5.359 9 C 0.318 3.682 10 O -0.365 6.365 11 C -0.262 4.262 12 S 0.054 5.946 13 C -0.766 4.766 14 H 0.084 0.916 15 C -0.220 4.220 16 N -0.549 5.549 17 Si 0.950 3.050 18 H -0.204 1.204 19 H -0.190 1.190 20 H -0.190 1.190 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.102 4.102 26 H 0.113 0.887 27 C -0.207 4.207 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.167 0.833 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.237 0.763 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.092 0.908 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.275 -3.572 22.333 22.853 hybrid contribution 0.893 -0.047 1.770 1.983 sum 4.168 -3.619 24.103 24.727 Atomic orbital electron populations 1.23996 0.95699 1.02490 1.00914 1.22993 0.96420 0.98160 1.00157 1.20557 0.97556 0.95239 0.98826 1.21803 0.94899 0.93478 0.95653 1.61091 1.22047 1.03212 1.43961 1.22500 0.95147 0.98227 0.91925 1.20331 0.91931 0.93621 0.83090 1.45634 1.10007 1.76191 1.04092 1.19346 0.87681 0.76983 0.84188 1.90541 1.14011 1.45957 1.86041 1.23242 1.02040 1.04884 0.96066 1.84823 1.13895 1.96570 0.99354 1.24089 0.95425 1.61958 0.95111 0.91559 1.27701 0.99386 0.91927 1.03010 1.70913 1.03360 1.46046 1.34612 0.82771 0.72640 0.78250 0.71314 1.20407 1.18975 1.19035 1.21946 0.98698 0.94226 1.02348 1.21407 0.97883 0.97033 0.98792 1.21506 0.97128 0.98296 0.98109 1.21583 0.97662 0.93143 1.02468 1.21316 0.95620 0.96049 0.97166 0.88704 1.21901 0.99556 0.96847 1.02358 0.88893 0.86732 0.86556 0.92789 0.93173 0.92069 0.95383 0.83266 0.90827 0.94277 0.76314 0.89296 0.89077 0.92827 0.91801 0.90699 0.92852 0.94101 0.91023 0.91805 0.89932 0.92443 0.92918 0.90845 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.33 14.32 67.78 0.97 -3.36 16 2 C -0.16 -3.96 9.52 25.64 0.24 -3.72 16 3 C -0.08 -2.51 5.92 29.85 0.18 -2.33 16 4 C 0.07 1.87 5.65 86.30 0.49 2.36 16 5 N -0.67 -18.96 3.09 -513.88 -1.59 -20.55 16 6 C 0.05 1.13 4.53 86.30 0.39 1.52 16 7 C 0.20 3.95 0.35 3.60 0.00 3.95 16 8 N -0.70 -17.19 3.76 -422.94 -1.59 -18.77 16 9 C 0.53 18.64 6.79 87.66 0.60 19.24 16 10 O -0.49 -19.64 9.62 -3.03 -0.03 -19.66 16 11 C -0.11 -4.51 6.16 71.24 0.44 -4.07 16 12 S -0.17 -9.53 19.60 -56.49 -1.11 -10.63 16 13 C -0.62 -36.47 9.50 67.95 0.65 -35.82 16 14 H 0.07 3.73 7.80 -2.91 -0.02 3.71 16 15 C -0.02 -1.00 5.49 84.86 0.47 -0.54 16 16 N -0.91 -58.75 13.67 21.65 0.30 -58.45 16 17 Si 1.13 50.49 29.92 68.60 2.05 52.54 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 C -0.13 -3.03 4.14 30.59 0.13 -2.90 16 22 C -0.11 -2.47 5.77 30.59 0.18 -2.30 16 23 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 24 C -0.11 -1.47 5.03 30.59 0.15 -1.32 16 25 C -0.08 -1.12 2.01 -10.79 -0.02 -1.14 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 C -0.15 -1.80 8.67 71.98 0.62 -1.18 16 28 H 0.09 2.09 7.84 -2.91 -0.02 2.06 16 29 H 0.11 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.05 1.66 7.79 -2.39 -0.02 1.64 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.35 10.75 6.14 -89.69 -0.55 10.20 16 36 H 0.07 1.57 6.31 -2.39 -0.02 1.55 16 37 H 0.04 0.74 8.14 -2.38 -0.02 0.73 16 38 H 0.40 8.22 6.21 -92.71 -0.58 7.64 16 39 H 0.09 3.49 8.14 -2.40 -0.02 3.47 16 40 H 0.09 3.53 8.14 -2.40 -0.02 3.51 16 41 H 0.26 17.39 7.12 -92.71 -0.66 16.73 16 42 H 0.06 1.93 4.86 -2.39 -0.01 1.92 16 43 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.04 1.08 7.40 -2.39 -0.02 1.06 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.86 7.02 -2.38 -0.02 0.84 16 50 H 0.05 0.69 6.72 -2.38 -0.02 0.68 16 51 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.06 0.74 6.38 -2.39 -0.02 0.73 16 Total: -1.00 -72.08 404.29 3.57 -68.51 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.12 Total: 40.17 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 5.66 Total: -33.15 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -2.88 Total: -97.77 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.03 Total: -19.66 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.54 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.11 Total: -10.63 kcal Total: -72.08 3.57 -68.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267868558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.312 kcal (2) G-P(sol) polarization free energy of solvation -72.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds