Wall clock time and date at job start Sat Apr 11 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00165 * 2 1 4 4 C 1.52999 * 109.46491 * 66.05077 * 3 2 1 5 5 C 1.53004 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.53346 * 109.41904 * 295.13027 * 5 4 3 7 7 C 1.53195 * 109.14901 * 178.67276 * 6 5 4 8 8 N 1.46919 * 108.89273 * 54.57640 * 7 6 5 9 9 C 1.34778 * 120.63255 * 126.34238 * 8 7 6 10 10 O 1.21279 * 120.00169 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00023 * 179.97438 * 9 8 7 12 12 S 1.81004 * 109.47124 * 179.97438 * 11 9 8 13 13 C 1.76202 * 100.00170 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99850 * 179.97438 * 13 12 11 16 16 N 1.31629 * 119.99522 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00089 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47079 * 90.00027 * 17 15 13 19 19 H 1.48499 * 109.47158 * 209.99871 * 17 15 13 20 20 H 1.48500 * 109.47338 * 329.99825 * 17 15 13 21 21 C 1.46933 * 118.74003 * 306.32349 * 8 7 6 22 22 C 1.53034 * 109.46014 * 174.99893 * 5 4 3 23 23 C 1.46913 * 110.99856 * 236.05168 * 2 1 3 24 24 C 1.52996 * 109.46823 * 293.95574 * 23 2 1 25 25 C 1.53001 * 117.49357 * 243.61919 * 24 23 2 26 26 C 1.52995 * 60.00119 * 252.50875 * 25 24 23 27 27 H 1.08997 * 109.47449 * 59.99572 * 1 2 3 28 28 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47017 * 299.99502 * 1 2 3 30 30 H 1.08991 * 109.47076 * 306.05089 * 3 2 1 31 31 H 1.08999 * 109.46965 * 186.04619 * 3 2 1 32 32 H 1.09001 * 109.47533 * 60.00207 * 4 3 2 33 33 H 1.08997 * 109.47446 * 299.99874 * 4 3 2 34 34 H 1.09001 * 109.45799 * 55.03056 * 5 4 3 35 35 H 1.08997 * 109.68637 * 58.70485 * 6 5 4 36 36 H 1.09002 * 109.47277 * 298.50741 * 6 5 4 37 37 H 1.09002 * 109.58720 * 294.71670 * 7 6 5 38 38 H 1.08996 * 109.58651 * 174.43567 * 7 6 5 39 39 H 1.09001 * 109.47488 * 299.99559 * 11 9 8 40 40 H 1.09001 * 109.47269 * 59.99982 * 11 9 8 41 41 H 0.97002 * 119.99660 * 180.02562 * 16 15 13 42 42 H 1.08994 * 109.58580 * 173.39910 * 21 8 7 43 43 H 1.09006 * 109.57831 * 293.67403 * 21 8 7 44 44 H 1.08994 * 109.50232 * 61.43679 * 22 5 4 45 45 H 1.09000 * 109.49784 * 301.33744 * 22 5 4 46 46 H 1.08997 * 109.47022 * 53.95108 * 23 2 1 47 47 H 1.08994 * 109.46907 * 173.95056 * 23 2 1 48 48 H 1.09000 * 115.55308 * 29.32650 * 24 23 2 49 49 H 1.08997 * 117.50394 * 0.02562 * 25 24 23 50 50 H 1.09007 * 117.49587 * 145.02306 * 25 24 23 51 51 H 1.09001 * 117.50550 * 252.51065 * 26 25 24 52 52 H 1.09005 * 117.49682 * 107.48908 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3184 5 6 2.1804 3.4855 1.3187 6 6 3.7130 3.4427 1.2893 7 6 4.2551 4.8751 1.2563 8 7 3.6923 5.6230 2.3888 9 6 4.4989 6.2708 3.2527 10 8 5.7015 6.2396 3.0994 11 6 3.9063 7.0341 4.4091 12 16 5.2357 7.7872 5.3795 13 6 4.2861 8.5920 6.6266 14 1 3.2087 8.5185 6.6165 15 6 4.9229 9.3196 7.6224 16 7 4.2135 9.9204 8.5543 17 14 6.7865 9.4462 7.6401 18 1 7.2098 10.6298 6.8496 19 1 7.2595 9.5912 9.0403 20 1 7.3718 8.2181 7.0446 21 6 2.2335 5.6516 2.5615 22 6 1.7110 4.2117 2.5814 23 6 1.9954 -0.7659 -1.1378 24 6 1.6314 -2.2425 -0.9706 25 6 2.7806 -3.2391 -0.8061 26 6 1.9900 -3.1925 -2.1151 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5611 1.9273 -0.8308 31 1 3.0797 1.3443 -0.1082 32 1 2.0659 1.5013 2.1492 33 1 0.5473 2.0843 1.4267 34 1 1.8156 4.0149 0.4385 35 1 4.0483 2.9062 0.4017 36 1 4.0795 2.9355 2.1817 37 1 3.9646 5.3544 0.3214 38 1 5.3421 4.8563 1.3348 39 1 3.2463 7.8141 4.0296 40 1 3.3372 6.3522 5.0410 41 1 4.6585 10.4292 9.2500 42 1 1.9865 6.1430 3.5025 43 1 1.7783 6.1964 1.7343 44 1 2.0962 3.6971 3.4616 45 1 0.6215 4.2205 2.6123 46 1 1.5610 -0.3871 -2.0629 47 1 3.0796 -0.6610 -1.1758 48 1 0.7106 -2.4405 -0.4219 49 1 3.7959 -2.8428 -0.8165 50 1 2.6160 -4.0931 -0.1489 51 1 1.3052 -4.0157 -2.3193 52 1 2.4852 -2.7654 -2.9872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268200433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:46 Heat of formation + Delta-G solvation = -19.649992 kcal Electronic energy + Delta-G solvation = -26888.904440 eV Core-core repulsion = 23207.842965 eV Total energy + Delta-G solvation = -3681.061475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.09574 -38.99446 -37.74917 -36.45161 -34.02026 -32.42875 -31.58984 -30.31664 -28.76549 -27.97861 -26.15794 -25.59355 -23.66524 -23.27489 -22.78224 -21.41873 -20.67095 -20.47261 -19.09203 -17.68750 -16.87422 -16.60050 -15.95886 -15.70089 -15.58773 -15.35277 -14.95538 -14.85918 -14.64090 -14.27833 -13.89274 -13.78238 -13.73285 -13.51760 -13.20527 -12.99321 -12.82198 -12.70629 -12.34407 -12.27113 -12.10449 -11.94584 -11.87941 -11.48883 -11.40294 -11.28464 -11.21116 -11.03611 -10.99725 -10.79664 -10.58420 -10.54179 -10.44804 -10.37835 -9.84533 -9.42180 -8.99343 -8.72357 -8.55324 -8.47303 -6.90611 -6.28030 -3.99529 2.74238 2.96789 3.21485 3.24027 3.34221 3.51791 3.57795 3.61110 4.25916 4.34075 4.39785 4.47284 4.50138 4.53538 4.61649 4.68124 4.83682 4.84778 4.90561 4.93626 5.03996 5.07434 5.11173 5.11522 5.16999 5.20078 5.24056 5.26933 5.28960 5.32657 5.42513 5.47799 5.50810 5.54972 5.61358 5.66846 5.68431 5.72638 5.76886 5.81088 5.82237 5.90778 5.95081 5.99097 6.01059 6.23798 6.62020 6.64006 6.67763 7.51190 7.95021 8.42231 8.47765 9.18352 10.81175 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.001707 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.883202 B =16395.651241 C =16667.432011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.054 3.946 4 C -0.110 4.110 5 C -0.085 4.085 6 C -0.129 4.129 7 C 0.112 3.888 8 N -0.617 5.617 9 C 0.533 3.467 10 O -0.521 6.521 11 C -0.121 4.121 12 S -0.144 6.144 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.107 3.893 22 C -0.129 4.129 23 C 0.085 3.915 24 C -0.148 4.148 25 C -0.174 4.174 26 C -0.184 4.184 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.270 0.730 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 -22.857 -22.127 33.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.073 4.073 4 C -0.147 4.147 5 C -0.104 4.104 6 C -0.167 4.167 7 C -0.010 4.010 8 N -0.353 5.353 9 C 0.321 3.679 10 O -0.396 6.396 11 C -0.272 4.272 12 S 0.083 5.917 13 C -0.668 4.668 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.017 4.017 22 C -0.167 4.167 23 C -0.042 4.042 24 C -0.167 4.167 25 C -0.211 4.211 26 C -0.221 4.221 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.093 0.907 48 H 0.126 0.874 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.735 -23.006 -21.752 32.592 hybrid contribution -1.154 0.620 -0.337 1.353 sum -8.890 -22.386 -22.089 32.682 Atomic orbital electron populations 1.22481 0.87564 1.02011 1.00818 1.61941 1.07917 1.13763 1.42732 1.22220 1.00318 0.87492 0.97304 1.21627 1.00879 0.94683 0.97555 1.21178 0.95421 0.95507 0.98313 1.22078 0.95191 0.96705 1.02739 1.21512 1.00287 0.90904 0.88335 1.48065 1.06655 1.52368 1.28260 1.20290 0.86679 0.78429 0.82486 1.90680 1.14487 1.60917 1.73505 1.23308 1.03967 1.02048 0.97837 1.84794 1.10570 1.65379 1.30985 1.22313 0.95984 1.36442 1.12098 0.89419 1.24706 0.98909 0.93673 0.93972 1.69940 1.36099 1.31839 1.13826 0.86735 0.85365 0.81336 0.78429 1.19222 1.19948 1.15923 1.21740 0.79957 0.97014 1.02947 1.21957 1.00776 0.95566 0.98430 1.21675 0.99873 0.91303 0.91379 1.22295 1.00188 0.91518 1.02669 1.22999 0.96627 1.01705 0.99758 1.22981 1.04120 1.02245 0.92767 0.95755 0.91355 0.90970 0.94943 0.90503 0.90893 0.91824 0.91178 0.90893 0.91221 0.92025 0.89018 0.88614 0.88539 0.91963 0.89161 0.91495 0.91086 0.90702 0.94579 0.90656 0.87424 0.88741 0.88881 0.88824 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.15 60.06 0.55 0.67 16 2 N -0.54 -3.93 4.76 -242.92 -1.16 -5.09 16 3 C 0.05 0.37 4.72 -3.82 -0.02 0.36 16 4 C -0.11 -0.78 4.61 -26.73 -0.12 -0.90 16 5 C -0.09 -0.65 2.15 -90.42 -0.19 -0.85 16 6 C -0.13 -1.16 5.16 -26.45 -0.14 -1.29 16 7 C 0.11 1.29 6.42 -3.71 -0.02 1.27 16 8 N -0.62 -8.45 2.97 -172.77 -0.51 -8.96 16 9 C 0.53 9.84 7.72 -10.99 -0.08 9.75 16 10 O -0.52 -11.51 15.27 5.56 0.08 -11.42 16 11 C -0.12 -2.39 4.50 36.00 0.16 -2.23 16 12 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 13 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 14 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 15 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 16 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 17 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 21 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 22 C -0.13 -1.11 5.36 -26.62 -0.14 -1.25 16 23 C 0.09 0.56 5.24 -3.82 -0.02 0.54 16 24 C -0.15 -0.92 5.68 -90.62 -0.51 -1.44 16 25 C -0.17 -1.04 10.18 -26.73 -0.27 -1.31 16 26 C -0.18 -0.98 10.25 -26.73 -0.27 -1.25 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.39 6.22 -51.93 -0.32 0.07 16 29 H 0.07 0.44 6.47 -51.93 -0.34 0.10 16 30 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 31 H 0.08 0.54 6.32 -51.93 -0.33 0.21 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.43 6.55 -51.93 -0.34 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.54 6.52 -51.93 -0.34 0.20 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 39 H 0.10 1.76 7.94 -51.92 -0.41 1.35 16 40 H 0.10 1.78 7.69 -51.91 -0.40 1.38 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.04 0.23 8.12 -51.93 -0.42 -0.19 16 47 H 0.08 0.50 7.66 -51.93 -0.40 0.10 16 48 H 0.11 0.69 6.36 -51.93 -0.33 0.36 16 49 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 50 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 51 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 412.08 15.07 6.21 6.21 Total: -1.00 -33.34 412.08 -11.58 -44.92 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -9.37 Total: -2.48 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.90 Total: -8.87 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.90 Total: -39.88 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.34 -11.58 -44.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268200433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.266 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds