Wall clock time and date at job start Sat Apr 11 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 119.99444 * 2 1 4 4 O 1.21282 * 119.99787 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00432 * 0.02562 * 3 2 1 6 6 S 1.80993 * 109.47123 * 179.97438 * 5 3 2 7 7 C 1.76206 * 99.99888 * 179.97438 * 6 5 3 8 8 H 1.07997 * 119.99482 * 359.97438 * 7 6 5 9 9 C 1.38792 * 119.99888 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00585 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99754 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47063 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46967 * 119.99770 * 11 9 7 14 14 H 1.48498 * 109.47269 * 239.99917 * 11 9 7 15 15 C 1.46500 * 120.00542 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.64391 * 178.30303 * 15 2 1 17 17 C 1.54597 * 110.71920 * 301.45225 * 15 2 1 18 18 C 1.53994 * 105.13867 * 140.31628 * 17 15 2 19 19 N 1.47906 * 107.05692 * 1.22245 * 18 17 15 20 20 C 1.46901 * 111.00115 * 214.15615 * 19 18 17 21 21 C 1.52992 * 109.47338 * 174.73392 * 20 19 18 22 22 C 1.52993 * 109.47611 * 174.72563 * 21 20 19 23 23 C 1.52992 * 109.47611 * 179.97438 * 22 21 20 24 24 C 1.53774 * 113.61708 * 274.13688 * 23 22 21 25 25 C 1.53957 * 87.02168 * 220.04821 * 24 23 22 26 26 C 1.53782 * 113.61527 * 176.52525 * 23 22 21 27 27 C 1.48530 * 105.81967 * 334.67214 * 19 18 17 28 28 H 1.08996 * 109.47331 * 269.99573 * 1 2 3 29 29 H 1.08997 * 109.47465 * 29.99821 * 1 2 3 30 30 H 1.09007 * 109.46562 * 149.99429 * 1 2 3 31 31 H 1.08999 * 109.46561 * 299.99862 * 5 3 2 32 32 H 1.09002 * 109.46793 * 59.99357 * 5 3 2 33 33 H 0.97001 * 120.00341 * 180.02562 * 10 9 7 34 34 H 1.09000 * 110.31305 * 21.40191 * 17 15 2 35 35 H 1.09003 * 110.39270 * 259.27589 * 17 15 2 36 36 H 1.09003 * 109.91676 * 241.87430 * 18 17 15 37 37 H 1.08993 * 110.08091 * 120.66690 * 18 17 15 38 38 H 1.09007 * 109.47061 * 294.73775 * 20 19 18 39 39 H 1.09000 * 109.46710 * 54.73397 * 20 19 18 40 40 H 1.09001 * 109.47064 * 294.72946 * 21 20 19 41 41 H 1.09007 * 109.47179 * 54.72251 * 21 20 19 42 42 H 1.09010 * 109.47014 * 300.00079 * 22 21 20 43 43 H 1.08999 * 109.47199 * 59.99301 * 22 21 20 44 44 H 1.09000 * 112.85043 * 45.33212 * 23 22 21 45 45 H 1.09004 * 113.61428 * 334.56428 * 24 23 22 46 46 H 1.08993 * 113.61702 * 105.46825 * 24 23 22 47 47 H 1.09002 * 113.53503 * 270.81009 * 25 24 23 48 48 H 1.09001 * 113.67083 * 139.93430 * 25 24 23 49 49 H 1.09004 * 113.61624 * 254.52636 * 26 23 22 50 50 H 1.09001 * 113.61456 * 25.43529 * 26 23 22 51 51 H 1.08998 * 110.66903 * 157.64363 * 27 19 18 52 52 H 1.09002 * 110.66553 * 280.76884 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3852 2.4724 0.0006 6 16 2.5614 3.8481 0.0012 7 6 1.4412 5.2083 0.0010 8 1 0.3759 5.0305 0.0002 9 6 1.9279 6.5081 0.0009 10 7 3.2261 6.7249 0.0013 11 14 0.7402 7.9501 0.0000 12 1 -0.6551 7.4421 0.0002 13 1 0.9654 8.7775 1.2124 14 1 0.9664 8.7769 -1.2126 15 6 2.1976 -1.2687 -0.0006 16 1 3.2727 -1.0916 -0.0307 17 6 1.8178 -2.1202 1.2326 18 6 1.7357 -3.5672 0.7123 19 7 2.0813 -3.5316 -0.7254 20 6 1.3174 -4.5375 -1.4756 21 6 1.6023 -4.3835 -2.9708 22 6 0.9119 -5.5112 -3.7404 23 6 1.1962 -5.3569 -5.2357 24 6 0.2165 -4.4149 -5.9551 25 6 0.2386 -5.4157 -7.1247 26 6 0.6150 -6.4930 -6.0938 27 6 1.7512 -2.1590 -1.1873 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5140 31 1 0.7583 2.5303 -0.8892 32 1 0.7588 2.5299 0.8908 33 1 3.5662 7.6333 0.0016 34 1 0.8519 -1.8047 1.6273 35 1 2.5854 -2.0378 2.0021 36 1 0.7238 -3.9514 0.8415 37 1 2.4438 -4.1985 1.2488 38 1 1.6128 -5.5350 -1.1502 39 1 0.2523 -4.3960 -1.2921 40 1 1.2219 -3.4221 -3.3160 41 1 2.6776 -4.4315 -3.1427 42 1 1.2924 -6.4727 -3.3952 43 1 -0.1634 -5.4632 -3.5685 44 1 2.2436 -5.1419 -5.4475 45 1 -0.7541 -4.3374 -5.4651 46 1 0.6459 -3.4440 -6.2019 47 1 1.0238 -5.2159 -7.8539 48 1 -0.7371 -5.5732 -7.5844 49 1 1.3657 -7.1972 -6.4525 50 1 -0.2464 -6.9847 -5.6418 51 1 2.3132 -1.9105 -2.0875 52 1 0.6798 -2.0591 -1.3616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269218541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:10 Heat of formation + Delta-G solvation = -40.749794 kcal Electronic energy + Delta-G solvation = -27053.446449 eV Core-core repulsion = 23371.470018 eV Total energy + Delta-G solvation = -3681.976431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.31207 -39.97960 -39.45477 -36.61414 -34.75489 -34.58957 -32.03285 -30.70340 -29.30888 -27.97271 -27.70588 -27.32573 -26.44063 -24.13960 -22.74794 -22.00560 -21.44321 -20.35360 -20.19349 -19.59339 -18.34687 -17.49501 -16.91508 -16.88400 -16.65177 -16.54336 -16.22572 -15.80076 -15.67031 -15.15014 -14.98623 -14.56604 -14.50934 -14.31898 -14.15899 -13.90940 -13.58746 -13.41721 -13.29219 -13.20361 -13.14639 -13.08718 -12.92236 -12.64630 -12.62548 -12.49324 -12.39156 -12.15357 -12.01696 -11.71907 -11.63133 -11.54025 -11.37447 -11.16319 -10.96591 -10.91394 -10.82687 -10.26748 -9.71528 -9.39501 -8.68141 -8.35027 -6.13600 1.24237 1.41316 1.44924 1.53507 1.56670 2.02569 2.26702 2.99148 3.02223 3.24749 3.51476 3.65487 3.70031 3.78369 3.80486 3.85590 3.99999 4.03112 4.10482 4.18396 4.20843 4.21958 4.31193 4.36050 4.44441 4.45707 4.55918 4.64300 4.68195 4.75423 4.76871 4.82101 4.85634 4.88654 4.91768 4.95557 4.97060 5.05231 5.05747 5.09511 5.13721 5.16143 5.28091 5.41615 5.41637 5.49682 5.50575 5.67132 5.87630 6.08800 6.19469 6.23930 7.06149 7.11324 8.74479 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.001993 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.393947 B =14044.049198 C =15437.267193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.532 3.468 4 O -0.566 6.566 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.255 1.255 13 H -0.274 1.274 14 H -0.274 1.274 15 C 0.132 3.868 16 H 0.078 0.922 17 C -0.136 4.136 18 C 0.045 3.955 19 N -0.530 5.530 20 C 0.052 3.948 21 C -0.113 4.113 22 C -0.099 4.099 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.135 4.135 27 C 0.039 3.961 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.071 0.929 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.658 -29.320 -6.176 32.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.320 3.680 4 O -0.444 6.444 5 C -0.273 4.273 6 S 0.073 5.927 7 C -0.692 4.692 8 H 0.102 0.898 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.822 3.178 12 H -0.179 1.179 13 H -0.200 1.200 14 H -0.199 1.199 15 C 0.028 3.972 16 H 0.097 0.903 17 C -0.175 4.175 18 C -0.083 4.083 19 N -0.254 5.254 20 C -0.076 4.076 21 C -0.151 4.151 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.179 4.179 25 C -0.184 4.184 26 C -0.172 4.172 27 C -0.090 4.090 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.090 0.910 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.215 -29.360 -6.252 31.709 hybrid contribution -2.138 1.381 0.084 2.547 sum -12.353 -27.979 -6.169 31.201 Atomic orbital electron populations 1.22084 0.77176 1.04645 1.03489 1.47762 1.08244 1.04210 1.73319 1.20201 0.87286 0.85491 0.75050 1.90680 1.15808 1.87414 1.50520 1.23367 1.02661 0.94769 1.06461 1.85631 1.12723 0.97361 1.97026 1.23223 0.94625 0.92559 1.58766 0.89815 1.26149 0.97618 1.01742 0.93756 1.70193 1.14143 1.22417 1.48058 0.84891 0.78199 0.76700 0.78060 1.17888 1.19958 1.19947 1.21928 0.97059 0.82204 0.96052 0.90347 1.22730 1.03082 0.94524 0.97114 1.22823 1.01081 0.95938 0.88478 1.64740 1.54436 1.02886 1.03374 1.22357 0.95523 0.95959 0.93767 1.21546 1.00853 0.99088 0.93603 1.21459 1.00517 0.98277 0.93463 1.22551 0.99047 0.97139 0.94407 1.23037 0.99825 0.97520 0.97560 1.22871 1.01926 0.96998 0.96602 1.22940 1.01056 0.96233 0.97001 1.23377 1.00014 0.88508 0.97080 0.90805 0.90190 0.88719 0.87277 0.87364 0.92003 0.89459 0.91140 0.91691 0.89596 0.89737 0.93770 0.92754 0.92375 0.91250 0.91422 0.90073 0.89850 0.92466 0.90422 0.91149 0.91439 0.89535 0.91040 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.15 127.77 1.17 2.37 16 2 N -0.60 -16.41 2.88 -815.86 -2.35 -18.76 16 3 C 0.53 20.56 7.69 87.66 0.67 21.23 16 4 O -0.57 -27.41 15.23 -3.03 -0.05 -27.45 16 5 C -0.12 -4.90 4.71 71.24 0.34 -4.57 16 6 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 7 C -0.54 -31.15 9.50 67.95 0.65 -30.50 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 C 0.01 0.68 5.49 84.86 0.47 1.15 16 10 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 11 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 12 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.13 3.32 3.47 46.20 0.16 3.48 16 16 H 0.08 2.59 6.99 -2.39 -0.02 2.57 16 17 C -0.14 -2.56 6.55 31.47 0.21 -2.35 16 18 C 0.04 0.67 6.70 86.45 0.58 1.25 16 19 N -0.53 -9.41 5.36 -883.03 -4.73 -14.14 16 20 C 0.05 0.68 4.87 86.30 0.42 1.10 16 21 C -0.11 -1.55 4.86 30.59 0.15 -1.41 16 22 C -0.10 -1.07 5.04 30.59 0.15 -0.91 16 23 C -0.11 -1.35 3.64 -10.27 -0.04 -1.39 16 24 C -0.14 -1.78 7.65 31.18 0.24 -1.54 16 25 C -0.15 -1.65 8.09 31.18 0.25 -1.40 16 26 C -0.13 -1.40 7.65 31.12 0.24 -1.16 16 27 C 0.04 0.78 4.85 86.65 0.42 1.20 16 28 H 0.07 1.10 7.90 -2.39 -0.02 1.09 16 29 H 0.08 1.43 6.44 -2.39 -0.02 1.42 16 30 H 0.09 1.20 6.06 -2.38 -0.01 1.18 16 31 H 0.11 3.95 7.40 -2.40 -0.02 3.94 16 32 H 0.11 3.94 8.11 -2.39 -0.02 3.92 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.09 1.41 6.99 -2.39 -0.02 1.39 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 0.75 7.65 -2.39 -0.02 0.73 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.04 0.51 7.95 -2.39 -0.02 0.49 16 40 H 0.05 0.84 7.17 -2.39 -0.02 0.83 16 41 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.07 0.66 7.87 -2.39 -0.02 0.64 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 0.96 7.92 -2.38 -0.02 0.95 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.09 0.78 8.10 -2.39 -0.02 0.76 16 51 H 0.07 1.67 7.77 -2.39 -0.02 1.65 16 52 H 0.07 1.12 5.95 -2.39 -0.01 1.10 16 Total: -1.00 -75.39 415.84 0.96 -74.43 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.87 Total: 19.66 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 6.07 Total: -13.44 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -6.80 Total: -88.97 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -75.39 0.96 -74.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269218541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.684 kcal (2) G-P(sol) polarization free energy of solvation -75.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds