Wall clock time and date at job start Sat Apr 11 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47096 * 2 1 4 4 F 1.39897 * 109.47387 * 120.00273 * 2 1 3 5 5 C 1.50700 * 109.47071 * 240.00518 * 2 1 3 6 6 O 1.21288 * 119.99782 * 316.09400 * 5 2 1 7 7 N 1.34777 * 120.00464 * 136.09247 * 5 2 1 8 8 C 1.46930 * 120.64351 * 185.24464 * 7 5 2 9 9 C 1.52727 * 109.01864 * 233.65917 * 8 7 5 10 10 C 1.52951 * 109.43479 * 305.70787 * 9 8 7 11 11 C 1.53249 * 109.48404 * 300.84764 * 10 9 8 12 12 C 1.53069 * 108.46076 * 172.81774 * 11 10 9 13 13 C 1.50179 * 109.90573 * 48.80281 * 12 11 10 14 14 O 1.21277 * 118.23525 * 162.31947 * 13 12 11 15 15 N 1.33350 * 123.52783 * 342.34341 * 13 12 11 16 16 C 1.46506 * 117.94824 * 182.30638 * 15 13 12 17 17 C 1.53005 * 109.46769 * 90.00596 * 16 15 13 18 18 C 1.50705 * 109.46838 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99744 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99854 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99928 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47223 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47417 * 119.99527 * 22 20 18 25 25 H 1.48505 * 109.46877 * 239.99355 * 22 20 18 26 26 C 1.45761 * 124.09494 * 2.30783 * 15 13 12 27 27 C 1.52951 * 109.70615 * 61.00039 * 10 9 8 28 28 C 1.46932 * 120.63669 * 5.52568 * 7 5 2 29 29 H 1.09005 * 109.47457 * 299.99279 * 1 2 3 30 30 H 1.08999 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47828 * 59.99883 * 1 2 3 32 32 H 1.08994 * 109.58783 * 353.49322 * 8 7 5 33 33 H 1.09002 * 109.58243 * 113.92235 * 8 7 5 34 34 H 1.09001 * 109.55952 * 185.65820 * 9 8 7 35 35 H 1.08995 * 109.34400 * 65.63691 * 9 8 7 36 36 H 1.09005 * 109.62975 * 292.51019 * 11 10 9 37 37 H 1.08999 * 109.63993 * 53.12002 * 11 10 9 38 38 H 1.08998 * 109.39960 * 168.93292 * 12 11 10 39 39 H 1.08997 * 109.40106 * 288.76139 * 12 11 10 40 40 H 1.09000 * 109.46702 * 209.99683 * 16 15 13 41 41 H 1.08993 * 109.47418 * 329.99802 * 16 15 13 42 42 H 1.09000 * 109.46763 * 299.99050 * 17 16 15 43 43 H 1.09000 * 109.47430 * 59.99473 * 17 16 15 44 44 H 0.97000 * 119.99930 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.26717 * 220.74033 * 26 15 13 46 46 H 1.09005 * 109.26505 * 101.26885 * 26 15 13 47 47 H 1.09002 * 109.49401 * 178.90494 * 27 10 9 48 48 H 1.09004 * 109.50984 * 58.84475 * 27 10 9 49 49 H 1.09001 * 109.58488 * 246.07750 * 28 7 5 50 50 H 1.09000 * 109.59483 * 6.36165 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0323 -0.7103 -1.2305 6 8 1.5209 -1.7531 -1.5800 7 7 3.0498 -0.1868 -1.9428 8 6 3.4753 -0.8047 -3.2061 9 6 4.9753 -1.0851 -3.1425 10 6 5.7194 0.2037 -2.7894 11 6 5.4257 1.2704 -3.8497 12 6 6.0307 2.5969 -3.3833 13 6 7.4526 2.3856 -2.9488 14 8 8.1761 3.3550 -2.8619 15 7 7.9626 1.1893 -2.6537 16 6 9.3520 1.1299 -2.1929 17 6 9.3894 1.2552 -0.6684 18 6 10.8186 1.1934 -0.1942 19 1 11.6199 1.0761 -0.9087 20 6 11.1029 1.2857 1.1517 21 7 10.1270 1.4281 2.0218 22 14 12.8743 1.2084 1.7395 23 1 13.7768 1.0458 0.5716 24 1 13.2132 2.4640 2.4564 25 1 13.0410 0.0536 2.6581 26 6 7.2242 -0.0628 -2.7612 27 6 5.2597 0.7059 -1.4198 28 6 3.7588 1.0092 -1.4677 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 -0.8899 32 1 2.9362 -1.7402 -3.3551 33 1 3.2682 -0.1254 -4.0330 34 1 5.3196 -1.4503 -4.1101 35 1 5.1697 -1.8383 -2.3790 36 1 5.8742 0.9767 -4.7987 37 1 4.3479 1.3812 -3.9691 38 1 6.0056 3.3144 -4.2034 39 1 5.4513 2.9843 -2.5453 40 1 9.7930 0.1784 -2.4900 41 1 9.9181 1.9477 -2.6387 42 1 8.9485 2.2067 -0.3712 43 1 8.8233 0.4373 -0.2226 44 1 10.3271 1.4933 2.9686 45 1 7.4616 -0.6950 -1.9056 46 1 7.5160 -0.5749 -3.6782 47 1 5.8061 1.6135 -1.1630 48 1 5.4522 -0.0595 -0.6679 49 1 3.5752 1.8383 -2.1510 50 1 3.4050 1.2721 -0.4708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270573541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:32 Heat of formation + Delta-G solvation = -124.821803 kcal Electronic energy + Delta-G solvation = -31575.230736 eV Core-core repulsion = 27323.395492 eV Total energy + Delta-G solvation = -4251.835243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -48.13112 -41.32414 -39.87302 -38.12217 -35.69347 -34.54864 -32.97795 -32.68584 -31.66164 -30.87467 -29.71886 -27.74679 -25.36118 -25.11210 -24.04649 -23.80002 -22.97623 -21.36402 -20.25909 -19.02661 -18.47865 -17.61413 -16.89460 -16.65055 -16.33518 -16.17737 -15.75528 -15.71399 -15.29106 -14.89535 -14.79840 -14.64469 -14.43369 -14.29411 -13.77234 -13.47675 -13.22064 -13.07337 -12.91348 -12.78170 -12.70780 -12.59564 -12.39321 -12.24732 -12.16892 -11.91509 -11.52030 -11.42864 -11.30444 -11.24465 -11.02343 -10.93536 -10.70696 -10.57109 -10.55465 -9.96913 -9.87936 -9.84831 -9.36764 -9.08858 -8.93214 -8.36373 -8.03436 -6.01779 -4.04293 2.06809 2.47811 3.09328 3.31039 3.38109 3.41729 3.49186 3.81572 4.13875 4.18864 4.33299 4.35903 4.43583 4.46364 4.61628 4.70123 4.73261 4.77542 4.92092 5.04541 5.16599 5.21450 5.23290 5.28710 5.34844 5.36438 5.42075 5.45273 5.49525 5.65813 5.66484 5.68238 5.70132 5.74983 5.83537 5.91665 5.99261 6.11818 6.15800 6.23937 6.56380 6.83987 6.89419 6.91598 7.61609 7.66418 7.72763 7.98405 8.03716 8.36386 8.67526 9.02337 9.59636 11.09682 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.003133 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.376559 B = 8933.615156 C =10251.398336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.105 0.895 4 F -0.189 7.189 5 C 0.496 3.504 6 O -0.525 6.525 7 N -0.601 5.601 8 C 0.111 3.889 9 C -0.121 4.121 10 C -0.071 4.071 11 C -0.116 4.116 12 C -0.135 4.135 13 C 0.508 3.492 14 O -0.552 6.552 15 N -0.596 5.596 16 C 0.109 3.891 17 C 0.017 3.983 18 C -0.519 4.519 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.126 3.874 27 C -0.128 4.128 28 C 0.099 3.901 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.020 0.980 43 H 0.014 0.986 44 H 0.260 0.740 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.111 -2.595 -11.085 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.123 0.877 4 F -0.170 7.170 5 C 0.282 3.718 6 O -0.400 6.400 7 N -0.335 5.335 8 C -0.011 4.011 9 C -0.159 4.159 10 C -0.071 4.071 11 C -0.153 4.153 12 C -0.175 4.175 13 C 0.296 3.704 14 O -0.431 6.431 15 N -0.328 5.328 16 C -0.012 4.012 17 C -0.021 4.021 18 C -0.558 4.558 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.002 3.998 27 C -0.166 4.166 28 C -0.023 4.023 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.036 -2.657 -11.034 23.027 hybrid contribution 1.108 -0.084 0.659 1.292 sum -18.928 -2.740 -10.375 21.758 Atomic orbital electron populations 1.22244 0.91594 1.05020 1.03904 1.21709 0.97113 0.96810 0.80995 0.87729 1.92921 1.90171 1.83230 1.50632 1.20978 0.80123 0.85547 0.85160 1.90714 1.57620 1.22194 1.69481 1.48189 1.32582 1.29382 1.23361 1.21600 0.95164 0.99605 0.84750 1.21794 0.94055 0.96926 1.03140 1.20769 0.94925 0.95753 0.95691 1.21819 1.01311 0.93793 0.98373 1.21699 0.93802 0.98816 1.03198 1.19912 0.89626 0.83041 0.77854 1.90732 1.59825 1.38834 1.53710 1.47457 1.14851 1.05628 1.64820 1.21919 0.79068 1.01235 0.98940 1.19328 0.97258 0.97462 0.88048 1.21133 0.92366 1.50178 0.92124 0.92538 1.24988 0.97199 0.95179 0.96909 1.69976 1.31296 1.50089 1.01860 0.86520 0.85019 0.77597 0.78768 1.19697 1.20972 1.21031 1.21346 0.89511 0.86701 1.02229 1.22017 0.94123 1.03659 0.96838 1.22016 0.92829 0.86826 1.00634 0.90236 0.90109 0.90393 0.88746 0.90778 0.89926 0.90665 0.90902 0.90602 0.88698 0.88626 0.92062 0.90566 0.96139 0.96766 0.93055 0.90178 0.91970 0.89418 0.90366 0.90319 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.41 37.16 0.35 -0.87 16 2 C 0.07 0.65 3.83 -27.88 -0.11 0.55 16 3 H 0.11 0.65 5.71 -51.93 -0.30 0.35 16 4 F -0.19 -2.27 17.07 2.25 0.04 -2.24 16 5 C 0.50 5.42 7.04 -10.98 -0.08 5.34 16 6 O -0.52 -7.43 15.90 5.55 0.09 -7.34 16 7 N -0.60 -5.45 2.98 -173.04 -0.52 -5.96 16 8 C 0.11 0.89 5.95 -3.95 -0.02 0.86 16 9 C -0.12 -0.97 4.88 -26.90 -0.13 -1.10 16 10 C -0.07 -0.68 0.52 -154.51 -0.08 -0.76 16 11 C -0.12 -0.96 4.18 -26.57 -0.11 -1.07 16 12 C -0.14 -1.52 5.36 -28.10 -0.15 -1.67 16 13 C 0.51 8.67 6.65 -11.87 -0.08 8.59 16 14 O -0.55 -12.24 16.18 5.56 0.09 -12.15 16 15 N -0.60 -9.99 2.68 -175.00 -0.47 -10.45 16 16 C 0.11 2.28 5.16 -4.04 -0.02 2.26 16 17 C 0.02 0.44 5.29 -27.88 -0.15 0.29 16 18 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.13 1.58 5.00 -4.52 -0.02 1.56 16 27 C -0.13 -1.37 4.29 -26.65 -0.11 -1.49 16 28 C 0.10 0.79 5.65 -3.70 -0.02 0.77 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.70 7.90 -51.93 -0.41 0.29 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.87 7.00 -51.93 -0.36 0.51 16 33 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.08 0.49 5.09 -51.93 -0.26 0.22 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.97 6.35 -51.93 -0.33 0.64 16 40 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 41 H 0.08 1.73 7.13 -51.93 -0.37 1.36 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 46 H 0.06 0.68 8.11 -51.93 -0.42 0.25 16 47 H 0.09 1.13 5.84 -51.93 -0.30 0.83 16 48 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.08 0.49 6.30 -51.93 -0.33 0.16 16 50 H 0.09 0.63 5.43 -51.93 -0.28 0.35 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -36.03 383.55 -8.31 -44.34 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.89 Total: -2.45 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.15 Total: -0.17 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.25 Total: -42.54 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.18 Total: -19.49 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.03 -8.31 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270573541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.483 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds