Wall clock time and date at job start Sat Apr 11 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47096 * 2 1 4 4 F 1.39897 * 109.47387 * 120.00273 * 2 1 3 5 5 C 1.50700 * 109.47071 * 240.00518 * 2 1 3 6 6 O 1.21288 * 119.99782 * 316.09400 * 5 2 1 7 7 N 1.34777 * 120.00464 * 136.09247 * 5 2 1 8 8 C 1.46930 * 120.64351 * 185.24464 * 7 5 2 9 9 C 1.52727 * 109.01864 * 233.65917 * 8 7 5 10 10 C 1.52951 * 109.43479 * 305.70787 * 9 8 7 11 11 C 1.53249 * 109.48404 * 300.84764 * 10 9 8 12 12 C 1.53069 * 108.46076 * 172.81774 * 11 10 9 13 13 C 1.50179 * 109.90573 * 48.80281 * 12 11 10 14 14 O 1.21277 * 118.23525 * 162.31947 * 13 12 11 15 15 N 1.33350 * 123.52783 * 342.34341 * 13 12 11 16 16 C 1.46506 * 117.94824 * 182.30638 * 15 13 12 17 17 C 1.53005 * 109.46769 * 90.00596 * 16 15 13 18 18 C 1.50705 * 109.46838 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99744 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99854 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99928 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47223 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47417 * 119.99527 * 22 20 18 25 25 H 1.48505 * 109.46877 * 239.99355 * 22 20 18 26 26 C 1.45761 * 124.09494 * 2.30783 * 15 13 12 27 27 C 1.52951 * 109.70615 * 61.00039 * 10 9 8 28 28 C 1.46932 * 120.63669 * 5.52568 * 7 5 2 29 29 H 1.09005 * 109.47457 * 299.99279 * 1 2 3 30 30 H 1.08999 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47828 * 59.99883 * 1 2 3 32 32 H 1.08994 * 109.58783 * 353.49322 * 8 7 5 33 33 H 1.09002 * 109.58243 * 113.92235 * 8 7 5 34 34 H 1.09001 * 109.55952 * 185.65820 * 9 8 7 35 35 H 1.08995 * 109.34400 * 65.63691 * 9 8 7 36 36 H 1.09005 * 109.62975 * 292.51019 * 11 10 9 37 37 H 1.08999 * 109.63993 * 53.12002 * 11 10 9 38 38 H 1.08998 * 109.39960 * 168.93292 * 12 11 10 39 39 H 1.08997 * 109.40106 * 288.76139 * 12 11 10 40 40 H 1.09000 * 109.46702 * 209.99683 * 16 15 13 41 41 H 1.08993 * 109.47418 * 329.99802 * 16 15 13 42 42 H 1.09000 * 109.46763 * 299.99050 * 17 16 15 43 43 H 1.09000 * 109.47430 * 59.99473 * 17 16 15 44 44 H 0.97000 * 119.99930 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.26717 * 220.74033 * 26 15 13 46 46 H 1.09005 * 109.26505 * 101.26885 * 26 15 13 47 47 H 1.09002 * 109.49401 * 178.90494 * 27 10 9 48 48 H 1.09004 * 109.50984 * 58.84475 * 27 10 9 49 49 H 1.09001 * 109.58488 * 246.07750 * 28 7 5 50 50 H 1.09000 * 109.59483 * 6.36165 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0323 -0.7103 -1.2305 6 8 1.5209 -1.7531 -1.5800 7 7 3.0498 -0.1868 -1.9428 8 6 3.4753 -0.8047 -3.2061 9 6 4.9753 -1.0851 -3.1425 10 6 5.7194 0.2037 -2.7894 11 6 5.4257 1.2704 -3.8497 12 6 6.0307 2.5969 -3.3833 13 6 7.4526 2.3856 -2.9488 14 8 8.1761 3.3550 -2.8619 15 7 7.9626 1.1893 -2.6537 16 6 9.3520 1.1299 -2.1929 17 6 9.3894 1.2552 -0.6684 18 6 10.8186 1.1934 -0.1942 19 1 11.6199 1.0761 -0.9087 20 6 11.1029 1.2857 1.1517 21 7 10.1270 1.4281 2.0218 22 14 12.8743 1.2084 1.7395 23 1 13.7768 1.0458 0.5716 24 1 13.2132 2.4640 2.4564 25 1 13.0410 0.0536 2.6581 26 6 7.2242 -0.0628 -2.7612 27 6 5.2597 0.7059 -1.4198 28 6 3.7588 1.0092 -1.4677 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 -0.8899 32 1 2.9362 -1.7402 -3.3551 33 1 3.2682 -0.1254 -4.0330 34 1 5.3196 -1.4503 -4.1101 35 1 5.1697 -1.8383 -2.3790 36 1 5.8742 0.9767 -4.7987 37 1 4.3479 1.3812 -3.9691 38 1 6.0056 3.3144 -4.2034 39 1 5.4513 2.9843 -2.5453 40 1 9.7930 0.1784 -2.4900 41 1 9.9181 1.9477 -2.6387 42 1 8.9485 2.2067 -0.3712 43 1 8.8233 0.4373 -0.2226 44 1 10.3271 1.4933 2.9686 45 1 7.4616 -0.6950 -1.9056 46 1 7.5160 -0.5749 -3.6782 47 1 5.8061 1.6135 -1.1630 48 1 5.4522 -0.0595 -0.6679 49 1 3.5752 1.8383 -2.1510 50 1 3.4050 1.2721 -0.4708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270573541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:29 Heat of formation + Delta-G solvation = -148.375107 kcal Electronic energy + Delta-G solvation = -31576.252083 eV Core-core repulsion = 27323.395492 eV Total energy + Delta-G solvation = -4252.856591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -48.96032 -42.28715 -40.90606 -39.19592 -36.99711 -35.91404 -34.69872 -33.57470 -32.41278 -31.78728 -31.47509 -28.78664 -26.95793 -25.95678 -25.25212 -24.66332 -23.79286 -23.08673 -21.23825 -20.06509 -19.29422 -18.69906 -18.44769 -17.68767 -17.55211 -17.30722 -16.93753 -16.70484 -16.48794 -16.18301 -15.74091 -15.58858 -15.49059 -15.37031 -14.80786 -14.57258 -14.46251 -14.32556 -14.17850 -13.99841 -13.69063 -13.59250 -13.30681 -13.28212 -13.08021 -12.94503 -12.88747 -12.81435 -12.58369 -12.31044 -12.15288 -12.06829 -12.00817 -11.89235 -11.76452 -11.43751 -11.36599 -11.31683 -10.75854 -10.60873 -10.56524 -9.74069 -9.53509 -8.24592 -6.36483 1.24574 1.37085 1.38289 1.51395 1.74757 1.78240 2.16495 2.40328 3.08956 3.09767 3.44687 3.48794 3.56617 3.60602 3.66850 3.75155 3.94274 4.02017 4.05989 4.24632 4.26133 4.34823 4.39306 4.46678 4.50522 4.59906 4.63072 4.70139 4.72562 4.77047 4.78636 4.83522 4.87949 4.91485 4.94220 4.96558 5.08691 5.11275 5.12236 5.25009 5.30129 5.38058 5.47624 5.48399 5.58837 5.81082 6.15566 6.16676 6.66390 6.78988 6.88015 7.31459 7.33625 8.87455 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.003133 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.376559 B = 8933.615156 C =10251.398336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.064 3.936 3 H 0.137 0.863 4 F -0.211 7.211 5 C 0.491 3.509 6 O -0.564 6.564 7 N -0.596 5.596 8 C 0.109 3.891 9 C -0.112 4.112 10 C -0.063 4.063 11 C -0.104 4.104 12 C -0.125 4.125 13 C 0.498 3.502 14 O -0.614 6.614 15 N -0.595 5.595 16 C 0.124 3.876 17 C 0.032 3.968 18 C -0.544 4.544 19 H 0.062 0.938 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.274 1.274 26 C 0.119 3.881 27 C -0.128 4.128 28 C 0.102 3.898 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.054 0.946 42 H -0.025 1.025 43 H -0.004 1.004 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.112 0.888 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.173 -2.443 -13.086 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.026 3.974 3 H 0.154 0.846 4 F -0.192 7.192 5 C 0.277 3.723 6 O -0.443 6.443 7 N -0.329 5.329 8 C -0.013 4.013 9 C -0.150 4.150 10 C -0.063 4.063 11 C -0.141 4.141 12 C -0.165 4.165 13 C 0.288 3.712 14 O -0.497 6.497 15 N -0.325 5.325 16 C 0.001 3.999 17 C -0.006 4.006 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.791 3.209 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.200 1.200 26 C -0.003 4.003 27 C -0.166 4.166 28 C -0.019 4.019 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.073 0.927 42 H -0.006 1.006 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.130 0.870 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.113 -2.526 -13.060 24.954 hybrid contribution 1.475 -0.137 1.323 1.986 sum -19.638 -2.664 -11.737 23.033 Atomic orbital electron populations 1.22251 0.90243 1.04246 1.05638 1.22050 0.98337 0.97725 0.79306 0.84616 1.92874 1.90554 1.83889 1.51853 1.21342 0.80253 0.85125 0.85553 1.90694 1.59121 1.23881 1.70584 1.48280 1.31772 1.29364 1.23439 1.21752 0.94409 1.00028 0.85080 1.21736 0.94093 0.95290 1.03878 1.20729 0.92577 0.97363 0.95673 1.21844 1.03321 0.91016 0.97964 1.21729 0.89381 1.01149 1.04201 1.21114 0.91723 0.81875 0.76452 1.90699 1.61933 1.40685 1.56349 1.47489 1.13514 1.07474 1.64065 1.21426 0.82019 1.01217 0.95260 1.19088 0.95783 0.94123 0.91556 1.21584 0.93547 1.50302 0.92797 0.91977 1.25976 1.02131 0.94479 0.97073 1.70110 1.33839 1.50782 1.02313 0.85366 0.79154 0.77828 0.78507 1.18438 1.20592 1.19960 1.21632 0.91489 0.84596 1.02594 1.21943 0.96166 1.01566 0.96965 1.22100 0.90398 0.87159 1.02257 0.88610 0.92124 0.88532 0.89887 0.87526 0.87261 0.92680 0.89229 0.87046 0.86942 0.87340 0.90149 0.92743 1.00620 0.98595 0.92760 0.92337 0.89185 0.91940 0.93242 0.86972 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.41 71.98 0.68 -1.45 16 2 C 0.06 1.07 3.83 29.85 0.11 1.18 16 3 H 0.14 1.34 5.71 -2.39 -0.01 1.32 16 4 F -0.21 -5.08 17.07 44.97 0.77 -4.31 16 5 C 0.49 10.11 7.04 87.66 0.62 10.72 16 6 O -0.56 -15.79 15.90 -3.06 -0.05 -15.84 16 7 N -0.60 -9.35 2.98 -819.75 -2.44 -11.80 16 8 C 0.11 1.39 5.95 86.21 0.51 1.90 16 9 C -0.11 -1.50 4.88 30.49 0.15 -1.35 16 10 C -0.06 -1.07 0.52 -52.18 -0.03 -1.10 16 11 C -0.10 -1.28 4.18 30.70 0.13 -1.15 16 12 C -0.13 -2.47 5.36 29.71 0.16 -2.31 16 13 C 0.50 17.03 6.65 87.72 0.58 17.62 16 14 O -0.61 -28.24 16.18 -3.02 -0.05 -28.29 16 15 N -0.60 -20.23 2.68 -826.77 -2.21 -22.45 16 16 C 0.12 5.37 5.16 86.38 0.45 5.81 16 17 C 0.03 1.78 5.29 29.85 0.16 1.93 16 18 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 19 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 20 C 0.00 0.09 5.46 84.65 0.46 0.55 16 21 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 22 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 26 C 0.12 2.90 5.00 86.47 0.43 3.34 16 27 C -0.13 -2.66 4.29 30.64 0.13 -2.53 16 28 C 0.10 1.37 5.65 86.36 0.49 1.86 16 29 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 1.03 7.90 -2.39 -0.02 1.01 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.35 7.00 -2.39 -0.02 1.33 16 33 H 0.11 0.73 6.56 -2.39 -0.02 0.72 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 0.93 8.13 -2.38 -0.02 0.91 16 37 H 0.11 0.69 5.09 -2.39 -0.01 0.68 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 1.91 6.35 -2.39 -0.02 1.89 16 40 H 0.08 3.13 8.01 -2.39 -0.02 3.11 16 41 H 0.05 2.60 7.13 -2.39 -0.02 2.58 16 42 H -0.02 -1.55 8.14 -2.39 -0.02 -1.57 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 44 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.06 1.68 8.08 -2.39 -0.02 1.66 16 46 H 0.09 1.73 8.11 -2.38 -0.02 1.71 16 47 H 0.06 1.63 5.84 -2.39 -0.01 1.62 16 48 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.11 0.84 6.30 -2.39 -0.02 0.82 16 50 H 0.10 1.16 5.43 -2.39 -0.01 1.14 16 Total: -1.00 -85.22 383.55 4.53 -80.68 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.94 Total: 8.80 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.27 Total: 3.43 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -4.37 Total: -91.72 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.10 Total: -44.13 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.77 Total: -4.31 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -85.22 4.53 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270573541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.691 kcal (2) G-P(sol) polarization free energy of solvation -85.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds