Wall clock time and date at job start Sat Apr 11 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47403 * 2 1 4 4 F 1.39906 * 109.47075 * 240.00568 * 2 1 3 5 5 C 1.50699 * 109.47536 * 120.00499 * 2 1 3 6 6 O 1.21285 * 119.99534 * 43.91022 * 5 2 1 7 7 N 1.34769 * 120.00444 * 223.91537 * 5 2 1 8 8 C 1.46931 * 120.63925 * 354.47776 * 7 5 2 9 9 C 1.53201 * 108.77262 * 233.72145 * 8 7 5 10 10 C 1.52941 * 109.36324 * 305.47976 * 9 8 7 11 11 C 1.53261 * 109.45326 * 181.20503 * 10 9 8 12 12 C 1.53069 * 108.45560 * 52.51527 * 11 10 9 13 13 C 1.50176 * 109.89530 * 48.83053 * 12 11 10 14 14 O 1.21274 * 118.23903 * 162.31010 * 13 12 11 15 15 N 1.33358 * 123.52382 * 342.33282 * 13 12 11 16 16 C 1.46503 * 117.94673 * 182.28186 * 15 13 12 17 17 C 1.53004 * 109.46585 * 90.00629 * 16 15 13 18 18 C 1.50699 * 109.46940 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00218 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00412 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99365 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00550 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46745 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47360 * 119.99742 * 22 20 18 25 25 H 1.48498 * 109.47001 * 239.99951 * 22 20 18 26 26 C 1.45766 * 124.10069 * 2.28727 * 15 13 12 27 27 C 1.52950 * 109.71317 * 61.11912 * 10 9 8 28 28 C 1.46926 * 120.64558 * 174.50310 * 7 5 2 29 29 H 1.09005 * 109.47119 * 299.99583 * 1 2 3 30 30 H 1.09005 * 109.47554 * 59.99585 * 1 2 3 31 31 H 1.08996 * 109.47431 * 179.97438 * 1 2 3 32 32 H 1.08988 * 109.59024 * 113.93408 * 8 7 5 33 33 H 1.09001 * 109.70283 * 353.57545 * 8 7 5 34 34 H 1.09001 * 109.49144 * 65.44981 * 9 8 7 35 35 H 1.09003 * 109.48936 * 185.50888 * 9 8 7 36 36 H 1.09001 * 109.64149 * 172.20213 * 11 10 9 37 37 H 1.09004 * 109.64283 * 292.81945 * 11 10 9 38 38 H 1.08995 * 109.40896 * 168.96362 * 12 11 10 39 39 H 1.09003 * 109.40048 * 288.79180 * 12 11 10 40 40 H 1.08992 * 109.46996 * 209.99822 * 16 15 13 41 41 H 1.09000 * 109.47503 * 330.00613 * 16 15 13 42 42 H 1.09001 * 109.47041 * 299.99369 * 17 16 15 43 43 H 1.08994 * 109.47873 * 59.99782 * 17 16 15 44 44 H 0.96998 * 120.00010 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.26774 * 220.77195 * 26 15 13 46 46 H 1.09000 * 109.26673 * 101.30235 * 26 15 13 47 47 H 1.08991 * 109.49403 * 178.91066 * 27 10 9 48 48 H 1.08999 * 109.50695 * 58.84972 * 27 10 9 49 49 H 1.09000 * 109.59015 * 246.05968 * 28 7 5 50 50 H 1.08997 * 109.58593 * 6.48435 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0323 -0.7105 1.2304 6 8 1.5211 -1.7534 1.5796 7 7 3.0497 -0.1871 1.9427 8 6 3.7585 1.0092 1.4680 9 6 5.2595 0.7062 1.4195 10 6 5.7197 0.2033 2.7886 11 6 7.2269 -0.0720 2.7511 12 6 7.9347 1.1778 2.2218 13 6 7.4427 2.3928 2.9547 14 8 8.1101 3.4040 2.9021 15 7 6.3115 2.4193 3.6606 16 6 5.9218 3.6857 4.2855 17 6 5.0527 4.4873 3.3144 18 6 4.6522 5.7903 3.9570 19 1 4.9840 6.0232 4.9581 20 6 3.8622 6.6852 3.2669 21 7 3.4586 6.4018 2.0477 22 14 3.3664 8.3006 4.0631 23 1 3.9462 8.3782 5.4280 24 1 3.8725 9.4317 3.2448 25 1 1.8859 8.3758 4.1498 26 6 5.4388 1.2671 3.8493 27 6 4.9757 -1.0857 3.1416 28 6 3.4718 -0.8019 3.2086 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.5750 1.8380 2.1515 33 1 3.4067 1.2733 0.4706 34 1 5.4519 -0.0590 0.6675 35 1 5.8057 1.6139 1.1631 36 1 7.5834 -0.2968 3.7563 37 1 7.4291 -0.9150 2.0904 38 1 9.0096 1.0758 2.3707 39 1 7.7256 1.2891 1.1578 40 1 5.3574 3.4831 5.1957 41 1 6.8152 4.2594 4.5320 42 1 5.6170 4.6899 2.4042 43 1 4.1593 3.9137 3.0679 44 1 2.9031 7.0315 1.5621 45 1 4.3995 1.5866 3.7719 46 1 5.6116 0.8432 4.8385 47 1 5.3203 -1.4513 4.1088 48 1 5.1699 -1.8388 2.3779 49 1 3.2651 -0.1195 4.0331 50 1 2.9301 -1.7355 3.3598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270573542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:41 Heat of formation + Delta-G solvation = -126.271362 kcal Electronic energy + Delta-G solvation = -32063.283435 eV Core-core repulsion = 27811.385334 eV Total energy + Delta-G solvation = -4251.898101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -48.01948 -41.24859 -39.77326 -38.02178 -35.50160 -34.78259 -32.90345 -32.68251 -31.44025 -30.88881 -29.68623 -27.32031 -25.85009 -24.91158 -24.28696 -23.63895 -22.46038 -21.41262 -20.24689 -19.30187 -18.27284 -17.39188 -16.76458 -16.58806 -16.24784 -16.13650 -15.70181 -15.59704 -15.25278 -14.82914 -14.72833 -14.57799 -14.44267 -14.23300 -13.66908 -13.43256 -13.13778 -13.08798 -12.87300 -12.71613 -12.61101 -12.49274 -12.27034 -12.24951 -12.03890 -11.95696 -11.45952 -11.41769 -11.32214 -11.20524 -10.99507 -10.81832 -10.74662 -10.59233 -10.50300 -9.92294 -9.89187 -9.81533 -9.37941 -9.08191 -8.80439 -8.40736 -8.06257 -6.07052 -4.08943 2.22467 2.63533 3.08879 3.27586 3.35427 3.38787 3.47666 3.97646 4.28681 4.33650 4.36648 4.42308 4.46192 4.48313 4.75300 4.78861 4.83928 4.90240 5.05267 5.10809 5.24749 5.27783 5.30031 5.37717 5.40481 5.44416 5.49679 5.59398 5.61774 5.69372 5.72304 5.74287 5.78845 5.83781 5.85958 5.91326 6.00067 6.11916 6.15032 6.29737 6.53219 6.80679 6.85944 7.07538 7.55023 7.68711 7.81545 7.93375 8.00633 8.31915 8.66299 8.97387 9.55202 11.04390 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008719 B = 0.004320 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.731291 B = 6479.688798 C = 8704.796241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.109 0.891 4 F -0.193 7.193 5 C 0.498 3.502 6 O -0.529 6.529 7 N -0.600 5.600 8 C 0.094 3.906 9 C -0.124 4.124 10 C -0.073 4.073 11 C -0.109 4.109 12 C -0.136 4.136 13 C 0.509 3.491 14 O -0.552 6.552 15 N -0.596 5.596 16 C 0.109 3.891 17 C 0.018 3.982 18 C -0.519 4.519 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.120 3.880 27 C -0.117 4.117 28 C 0.106 3.894 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.013 0.987 44 H 0.260 0.740 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -17.453 -1.186 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.127 0.873 4 F -0.174 7.174 5 C 0.284 3.716 6 O -0.405 6.405 7 N -0.333 5.333 8 C -0.028 4.028 9 C -0.162 4.162 10 C -0.074 4.074 11 C -0.147 4.147 12 C -0.176 4.176 13 C 0.296 3.704 14 O -0.430 6.430 15 N -0.328 5.328 16 C -0.012 4.012 17 C -0.020 4.020 18 C -0.557 4.557 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.003 4.003 27 C -0.155 4.155 28 C -0.016 4.016 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.039 0.961 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.067 -17.441 -1.183 17.481 hybrid contribution -0.304 1.000 0.222 1.068 sum -0.237 -16.441 -0.960 16.471 Atomic orbital electron populations 1.22232 0.91525 1.04759 1.04197 1.21747 0.97277 0.97046 0.80716 0.87332 1.92882 1.90241 1.83344 1.50925 1.20937 0.80005 0.85431 0.85248 1.90694 1.57579 1.22428 1.69785 1.48186 1.32708 1.29389 1.23029 1.22084 0.92176 0.86995 1.01523 1.21988 0.95172 1.02593 0.96453 1.20797 0.95779 0.95145 0.95643 1.21686 0.93354 0.97475 1.02140 1.21700 1.01766 0.92800 1.01359 1.19939 0.80872 0.89893 0.79674 1.90730 1.55386 1.34876 1.62018 1.47451 1.22043 1.11954 1.51340 1.21921 1.00100 0.82764 0.96456 1.19329 0.93780 0.94036 0.94843 1.21135 1.31037 1.02432 1.01140 0.92548 1.24967 0.96031 0.98315 0.94840 1.69963 1.36109 1.36268 1.10934 0.86532 0.78108 0.83771 0.79579 1.19693 1.20963 1.21054 1.21490 0.95484 0.85924 0.97420 1.21888 0.94191 0.96536 1.02911 1.21712 0.95040 0.99765 0.85092 0.90160 0.90243 0.90281 0.89072 0.89280 0.90963 0.89572 0.91008 0.90718 0.88692 0.88480 0.92110 0.90539 0.96053 0.96901 0.93070 0.90107 0.92023 0.90051 0.90782 0.90639 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.41 37.15 0.35 -1.29 16 2 C 0.07 0.79 3.84 -27.89 -0.11 0.69 16 3 H 0.11 1.05 5.71 -51.93 -0.30 0.76 16 4 F -0.19 -2.46 17.07 2.25 0.04 -2.42 16 5 C 0.50 6.37 7.04 -10.99 -0.08 6.29 16 6 O -0.53 -8.21 15.90 5.55 0.09 -8.12 16 7 N -0.60 -6.76 2.97 -172.76 -0.51 -7.27 16 8 C 0.09 1.07 5.73 -3.70 -0.02 1.05 16 9 C -0.12 -1.33 4.30 -26.66 -0.11 -1.45 16 10 C -0.07 -0.71 0.51 -154.52 -0.08 -0.79 16 11 C -0.11 -0.97 4.94 -26.56 -0.13 -1.10 16 12 C -0.14 -1.60 5.39 -28.10 -0.15 -1.75 16 13 C 0.51 8.64 6.66 -11.87 -0.08 8.56 16 14 O -0.55 -12.16 16.18 5.56 0.09 -12.07 16 15 N -0.60 -9.68 2.70 -175.01 -0.47 -10.15 16 16 C 0.11 2.18 5.16 -4.04 -0.02 2.16 16 17 C 0.02 0.44 5.29 -27.88 -0.15 0.29 16 18 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 22 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.12 1.45 4.23 -4.53 -0.02 1.43 16 27 C -0.12 -0.95 4.88 -26.65 -0.13 -1.08 16 28 C 0.11 1.03 6.00 -3.71 -0.02 1.01 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 32 H 0.09 1.22 6.32 -51.94 -0.33 0.89 16 33 H 0.09 0.94 5.44 -51.93 -0.28 0.66 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.10 5.75 -51.93 -0.30 0.80 16 36 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.10 1.08 6.92 -51.93 -0.36 0.72 16 40 H 0.06 1.12 8.01 -51.93 -0.42 0.70 16 41 H 0.08 1.70 7.13 -51.93 -0.37 1.33 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.01 0.32 7.93 -51.93 -0.41 -0.10 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.08 1.04 5.07 -51.93 -0.26 0.78 16 46 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 0.70 6.96 -51.93 -0.36 0.34 16 50 H 0.09 0.99 7.00 -51.93 -0.36 0.63 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -33.98 384.47 -8.35 -42.33 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.93 Total: -0.35 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.16 Total: 1.09 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.25 Total: -42.44 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.18 Total: -20.19 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.98 -8.35 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270573542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.942 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds