Wall clock time and date at job start Sat Apr 11 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47403 * 2 1 4 4 F 1.39906 * 109.47075 * 240.00568 * 2 1 3 5 5 C 1.50699 * 109.47536 * 120.00499 * 2 1 3 6 6 O 1.21285 * 119.99534 * 43.91022 * 5 2 1 7 7 N 1.34769 * 120.00444 * 223.91537 * 5 2 1 8 8 C 1.46931 * 120.63925 * 354.47776 * 7 5 2 9 9 C 1.53201 * 108.77262 * 233.72145 * 8 7 5 10 10 C 1.52941 * 109.36324 * 305.47976 * 9 8 7 11 11 C 1.53261 * 109.45326 * 181.20503 * 10 9 8 12 12 C 1.53069 * 108.45560 * 52.51527 * 11 10 9 13 13 C 1.50176 * 109.89530 * 48.83053 * 12 11 10 14 14 O 1.21274 * 118.23903 * 162.31010 * 13 12 11 15 15 N 1.33358 * 123.52382 * 342.33282 * 13 12 11 16 16 C 1.46503 * 117.94673 * 182.28186 * 15 13 12 17 17 C 1.53004 * 109.46585 * 90.00629 * 16 15 13 18 18 C 1.50699 * 109.46940 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00218 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00412 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99365 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00550 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46745 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47360 * 119.99742 * 22 20 18 25 25 H 1.48498 * 109.47001 * 239.99951 * 22 20 18 26 26 C 1.45766 * 124.10069 * 2.28727 * 15 13 12 27 27 C 1.52950 * 109.71317 * 61.11912 * 10 9 8 28 28 C 1.46926 * 120.64558 * 174.50310 * 7 5 2 29 29 H 1.09005 * 109.47119 * 299.99583 * 1 2 3 30 30 H 1.09005 * 109.47554 * 59.99585 * 1 2 3 31 31 H 1.08996 * 109.47431 * 179.97438 * 1 2 3 32 32 H 1.08988 * 109.59024 * 113.93408 * 8 7 5 33 33 H 1.09001 * 109.70283 * 353.57545 * 8 7 5 34 34 H 1.09001 * 109.49144 * 65.44981 * 9 8 7 35 35 H 1.09003 * 109.48936 * 185.50888 * 9 8 7 36 36 H 1.09001 * 109.64149 * 172.20213 * 11 10 9 37 37 H 1.09004 * 109.64283 * 292.81945 * 11 10 9 38 38 H 1.08995 * 109.40896 * 168.96362 * 12 11 10 39 39 H 1.09003 * 109.40048 * 288.79180 * 12 11 10 40 40 H 1.08992 * 109.46996 * 209.99822 * 16 15 13 41 41 H 1.09000 * 109.47503 * 330.00613 * 16 15 13 42 42 H 1.09001 * 109.47041 * 299.99369 * 17 16 15 43 43 H 1.08994 * 109.47873 * 59.99782 * 17 16 15 44 44 H 0.96998 * 120.00010 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.26774 * 220.77195 * 26 15 13 46 46 H 1.09000 * 109.26673 * 101.30235 * 26 15 13 47 47 H 1.08991 * 109.49403 * 178.91066 * 27 10 9 48 48 H 1.08999 * 109.50695 * 58.84972 * 27 10 9 49 49 H 1.09000 * 109.59015 * 246.05968 * 28 7 5 50 50 H 1.08997 * 109.58593 * 6.48435 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0323 -0.7105 1.2304 6 8 1.5211 -1.7534 1.5796 7 7 3.0497 -0.1871 1.9427 8 6 3.7585 1.0092 1.4680 9 6 5.2595 0.7062 1.4195 10 6 5.7197 0.2033 2.7886 11 6 7.2269 -0.0720 2.7511 12 6 7.9347 1.1778 2.2218 13 6 7.4427 2.3928 2.9547 14 8 8.1101 3.4040 2.9021 15 7 6.3115 2.4193 3.6606 16 6 5.9218 3.6857 4.2855 17 6 5.0527 4.4873 3.3144 18 6 4.6522 5.7903 3.9570 19 1 4.9840 6.0232 4.9581 20 6 3.8622 6.6852 3.2669 21 7 3.4586 6.4018 2.0477 22 14 3.3664 8.3006 4.0631 23 1 3.9462 8.3782 5.4280 24 1 3.8725 9.4317 3.2448 25 1 1.8859 8.3758 4.1498 26 6 5.4388 1.2671 3.8493 27 6 4.9757 -1.0857 3.1416 28 6 3.4718 -0.8019 3.2086 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.5750 1.8380 2.1515 33 1 3.4067 1.2733 0.4706 34 1 5.4519 -0.0590 0.6675 35 1 5.8057 1.6139 1.1631 36 1 7.5834 -0.2968 3.7563 37 1 7.4291 -0.9150 2.0904 38 1 9.0096 1.0758 2.3707 39 1 7.7256 1.2891 1.1578 40 1 5.3574 3.4831 5.1957 41 1 6.8152 4.2594 4.5320 42 1 5.6170 4.6899 2.4042 43 1 4.1593 3.9137 3.0679 44 1 2.9031 7.0315 1.5621 45 1 4.3995 1.5866 3.7719 46 1 5.6116 0.8432 4.8385 47 1 5.3203 -1.4513 4.1088 48 1 5.1699 -1.8388 2.3779 49 1 3.2651 -0.1195 4.0331 50 1 2.9301 -1.7355 3.3598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270573542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:37 Heat of formation + Delta-G solvation = -147.189097 kcal Electronic energy + Delta-G solvation = -32064.190496 eV Core-core repulsion = 27811.385334 eV Total energy + Delta-G solvation = -4252.805162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -48.97700 -42.27788 -40.89852 -39.16087 -36.80747 -36.12534 -34.74171 -33.60329 -32.31678 -31.84609 -31.44356 -28.34216 -27.21134 -26.24731 -25.32254 -24.59838 -23.62057 -22.83325 -21.38349 -20.37292 -19.25652 -18.71356 -18.27127 -17.64817 -17.46779 -17.31706 -16.92371 -16.70617 -16.52311 -16.18964 -15.74327 -15.68875 -15.44758 -15.28507 -14.74538 -14.63478 -14.47499 -14.33814 -14.11202 -14.01141 -13.63811 -13.59040 -13.37268 -13.18760 -13.11761 -13.03443 -12.91817 -12.85228 -12.54924 -12.33260 -12.23470 -12.08422 -11.90290 -11.83711 -11.70933 -11.42538 -11.35855 -11.32460 -10.79007 -10.56051 -10.53363 -9.75741 -9.51719 -8.21179 -6.31301 1.22711 1.38801 1.40793 1.52647 1.72831 1.75915 2.17608 2.42829 3.04938 3.12832 3.43403 3.49464 3.52494 3.60239 3.63370 3.75791 3.92068 4.01508 4.06021 4.19318 4.24212 4.37904 4.41430 4.46203 4.50478 4.58998 4.59926 4.66087 4.76997 4.78316 4.79715 4.83593 4.90984 4.94591 4.97301 5.01076 5.04773 5.06392 5.14622 5.23764 5.25518 5.37627 5.45182 5.53254 5.64968 5.85566 6.12185 6.21649 6.66845 6.83091 6.84220 7.32781 7.37533 8.90416 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008719 B = 0.004320 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.731291 B = 6479.688798 C = 8704.796241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 H 0.121 0.879 4 F -0.202 7.202 5 C 0.494 3.506 6 O -0.560 6.560 7 N -0.593 5.593 8 C 0.097 3.903 9 C -0.121 4.121 10 C -0.066 4.066 11 C -0.099 4.099 12 C -0.127 4.127 13 C 0.499 3.501 14 O -0.614 6.614 15 N -0.592 5.592 16 C 0.123 3.877 17 C 0.034 3.966 18 C -0.543 4.543 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.114 3.886 27 C -0.104 4.104 28 C 0.099 3.901 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.050 0.950 42 H -0.024 1.024 43 H 0.006 0.994 44 H 0.263 0.737 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -19.104 -0.294 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.029 3.971 3 H 0.139 0.861 4 F -0.183 7.183 5 C 0.281 3.719 6 O -0.438 6.438 7 N -0.326 5.326 8 C -0.025 4.025 9 C -0.160 4.160 10 C -0.066 4.066 11 C -0.136 4.136 12 C -0.167 4.167 13 C 0.290 3.710 14 O -0.497 6.497 15 N -0.322 5.322 16 C 0.000 4.000 17 C -0.004 4.004 18 C -0.581 4.581 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.188 1.188 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.008 4.008 27 C -0.142 4.142 28 C -0.023 4.023 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.069 0.931 42 H -0.006 1.006 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.127 0.873 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.173 -19.130 -0.273 19.133 hybrid contribution -0.359 1.553 -0.069 1.595 sum -0.186 -17.577 -0.342 17.581 Atomic orbital electron populations 1.22243 0.90479 1.04506 1.05284 1.21896 0.98210 0.97239 0.79772 0.86128 1.92860 1.90430 1.83612 1.51388 1.21198 0.79929 0.85128 0.85659 1.90676 1.58587 1.23777 1.70781 1.48232 1.32069 1.28941 1.23328 1.21990 0.93040 0.86358 1.01129 1.21956 0.93997 1.02095 0.97902 1.20780 0.97022 0.94968 0.93874 1.21699 0.91654 0.96593 1.03664 1.21705 1.02676 0.91455 1.00850 1.20997 0.80244 0.90871 0.78934 1.90698 1.57285 1.37583 1.64090 1.47453 1.22455 1.11708 1.50605 1.21453 0.98213 0.84182 0.96158 1.19090 0.93433 0.94075 0.93818 1.21565 1.31237 1.03800 1.01507 0.92324 1.25848 0.95960 1.01946 0.95363 1.70078 1.36636 1.37610 1.12226 0.85470 0.78141 0.79042 0.78834 1.18765 1.20898 1.19929 1.21796 0.94050 0.85087 0.99894 1.21833 0.92229 0.95384 1.04746 1.21898 0.96431 0.99525 0.84415 0.89667 0.88586 0.91170 0.91446 0.88873 0.89197 0.91942 0.89453 0.87659 0.87422 0.87830 0.90037 0.93121 1.00597 0.97602 0.92801 0.91159 0.89297 0.87261 0.89934 0.90210 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.41 71.98 0.68 -2.47 16 2 C 0.07 1.47 3.84 29.84 0.11 1.59 16 3 H 0.12 2.30 5.71 -2.39 -0.01 2.28 16 4 F -0.20 -5.02 17.07 44.97 0.77 -4.25 16 5 C 0.49 12.33 7.04 87.66 0.62 12.95 16 6 O -0.56 -17.12 15.90 -3.05 -0.05 -17.16 16 7 N -0.59 -12.74 2.97 -818.89 -2.43 -15.17 16 8 C 0.10 2.17 5.73 86.36 0.49 2.67 16 9 C -0.12 -2.43 4.30 30.64 0.13 -2.30 16 10 C -0.07 -1.09 0.51 -52.19 -0.03 -1.11 16 11 C -0.10 -1.36 4.94 30.70 0.15 -1.21 16 12 C -0.13 -2.75 5.39 29.71 0.16 -2.59 16 13 C 0.50 17.08 6.66 87.71 0.58 17.66 16 14 O -0.61 -28.26 16.18 -3.01 -0.05 -28.31 16 15 N -0.59 -19.20 2.70 -826.79 -2.23 -21.43 16 16 C 0.12 5.07 5.16 86.38 0.45 5.52 16 17 C 0.03 1.74 5.29 29.85 0.16 1.89 16 18 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 20 C 0.01 0.41 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 22 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.11 2.53 4.23 86.46 0.37 2.90 16 27 C -0.10 -1.29 4.88 30.64 0.15 -1.14 16 28 C 0.10 1.72 6.00 86.36 0.52 2.24 16 29 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.07 1.45 7.90 -2.39 -0.02 1.43 16 32 H 0.07 1.86 6.32 -2.39 -0.02 1.84 16 33 H 0.09 1.97 5.44 -2.39 -0.01 1.96 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.58 5.75 -2.39 -0.01 1.57 16 36 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.14 6.92 -2.39 -0.02 2.13 16 40 H 0.08 3.00 8.01 -2.39 -0.02 2.98 16 41 H 0.05 2.35 7.13 -2.39 -0.02 2.34 16 42 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 43 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 44 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.07 1.75 5.07 -2.39 -0.01 1.74 16 46 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 47 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 1.33 6.96 -2.39 -0.02 1.31 16 50 H 0.09 1.72 7.00 -2.39 -0.02 1.71 16 Total: -1.00 -77.45 384.47 4.50 -72.95 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.94 Total: 14.62 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.24 Total: 7.27 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -4.38 Total: -90.90 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.10 Total: -45.48 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.77 Total: -4.25 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -77.45 4.50 -72.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270573542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.238 kcal (2) G-P(sol) polarization free energy of solvation -77.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds