Wall clock time and date at job start Sat Apr 11 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99930 * 2 1 4 4 C 1.50700 * 120.00145 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47687 * 94.99538 * 4 2 1 6 6 N 1.46906 * 109.47228 * 179.97438 * 5 4 2 7 7 C 1.46898 * 110.99961 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47062 * 325.00224 * 7 6 5 9 9 C 1.53006 * 109.47006 * 84.99970 * 7 6 5 10 10 C 1.52997 * 109.47123 * 204.99951 * 7 6 5 11 11 H 1.09004 * 109.49344 * 59.93828 * 10 7 6 12 12 C 1.53039 * 109.49578 * 180.02562 * 10 7 6 13 13 C 1.53042 * 109.53519 * 181.31627 * 12 10 7 14 14 C 1.53188 * 109.31539 * 298.63378 * 13 12 10 15 15 N 1.46924 * 108.77139 * 54.63674 * 14 13 12 16 16 C 1.34786 * 120.62948 * 126.41257 * 15 14 13 17 17 O 1.21284 * 119.99780 * 179.97438 * 16 15 14 18 18 C 1.50691 * 119.99991 * 359.97438 * 16 15 14 19 19 S 1.80997 * 109.47082 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00155 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00378 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00300 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47121 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46765 * 120.00486 * 24 22 20 27 27 H 1.48500 * 109.47328 * 240.00117 * 24 22 20 28 28 C 1.46924 * 118.74313 * 306.38973 * 15 14 13 29 29 H 1.07999 * 120.00049 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00229 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47643 * 270.00360 * 3 2 1 32 32 H 1.09004 * 109.46760 * 30.00390 * 3 2 1 33 33 H 1.08998 * 109.47002 * 150.00124 * 3 2 1 34 34 H 1.09009 * 109.46913 * 334.99119 * 4 2 1 35 35 H 1.09003 * 109.46802 * 215.00307 * 4 2 1 36 36 H 1.08996 * 109.47071 * 60.00047 * 5 4 2 37 37 H 1.08994 * 109.47081 * 300.00247 * 5 4 2 38 38 H 1.00895 * 110.99813 * 56.04866 * 6 5 4 39 39 H 1.09001 * 109.46998 * 59.99660 * 9 7 6 40 40 H 1.09000 * 109.47050 * 179.97438 * 9 7 6 41 41 H 1.09001 * 109.46801 * 300.00064 * 9 7 6 42 42 H 1.08997 * 109.46147 * 301.33858 * 12 10 7 43 43 H 1.09006 * 109.46020 * 61.29737 * 12 10 7 44 44 H 1.09002 * 109.49731 * 58.58954 * 13 12 10 45 45 H 1.09006 * 109.49361 * 178.65328 * 13 12 10 46 46 H 1.08998 * 109.58756 * 174.42212 * 14 13 12 47 47 H 1.08996 * 109.58835 * 294.71139 * 14 13 12 48 48 H 1.08997 * 109.47984 * 300.00197 * 18 16 15 49 49 H 1.09009 * 109.46990 * 60.00532 * 18 16 15 50 50 H 0.97000 * 120.00091 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.58535 * 293.82758 * 28 15 14 52 52 H 1.08997 * 109.59293 * 173.39803 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 7 3.1624 -2.9553 -1.4381 7 6 3.5286 -3.3513 -2.8044 8 1 2.7401 -3.0494 -3.4938 9 6 4.8399 -2.6688 -3.1991 10 6 3.7055 -4.8698 -2.8653 11 1 2.7718 -5.3564 -2.5831 12 6 4.0877 -5.2829 -4.2885 13 6 4.2328 -6.8048 -4.3580 14 6 5.3492 -7.2513 -3.4088 15 7 5.0618 -6.7334 -2.0642 16 6 5.0249 -7.5627 -1.0023 17 8 4.7870 -7.1228 0.1026 18 6 5.2792 -9.0363 -1.1880 19 16 5.1615 -9.8751 0.4116 20 6 5.4929 -11.5323 -0.0868 21 1 5.6876 -11.7553 -1.1254 22 6 5.5047 -12.5513 0.8557 23 7 5.2679 -12.2796 2.1217 24 14 5.8553 -14.3083 0.3272 25 1 6.0867 -14.3473 -1.1392 26 1 7.0641 -14.8053 1.0321 27 1 4.6943 -15.1690 0.6686 28 6 4.8159 -5.2943 -1.8990 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 2.2451 1.6199 -1.0276 32 1 1.4743 2.0647 0.5139 33 1 3.0159 1.1748 0.5138 34 1 1.4386 -2.0856 0.4336 35 1 2.9742 -1.1990 0.5890 36 1 3.0522 -0.9029 -1.8717 37 1 1.5167 -1.7894 -2.0271 38 1 2.6298 -3.6809 -0.9822 39 1 5.6284 -2.9706 -2.5096 40 1 5.1119 -2.9630 -4.2128 41 1 4.7138 -1.5870 -3.1557 42 1 3.3106 -4.9601 -4.9813 43 1 5.0338 -4.8150 -4.5607 44 1 3.2943 -7.2737 -4.0621 45 1 4.4815 -7.1002 -5.3774 46 1 5.3905 -8.3401 -3.3799 47 1 6.3042 -6.8584 -3.7575 48 1 4.5373 -9.4500 -1.8709 49 1 6.2766 -9.1835 -1.6025 50 1 5.2766 -12.9917 2.7803 51 1 5.7272 -4.7398 -2.1233 52 1 4.5054 -5.0919 -0.8740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271623923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:04 Heat of formation + Delta-G solvation = -56.778787 kcal Electronic energy + Delta-G solvation = -27399.608977 eV Core-core repulsion = 23716.937476 eV Total energy + Delta-G solvation = -3682.671501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31909 -39.42584 -37.99817 -36.59901 -34.59165 -34.12509 -32.67362 -31.34942 -29.63550 -28.80730 -28.05963 -27.69664 -26.15140 -25.09952 -23.48265 -22.28666 -20.98236 -20.04857 -19.46265 -19.20028 -18.15429 -17.17361 -16.89379 -16.85659 -16.50199 -16.22782 -16.14363 -15.63825 -15.58243 -15.16256 -14.97739 -14.71090 -14.54636 -14.43450 -14.21570 -13.98276 -13.72930 -13.55833 -13.48801 -13.25673 -13.15469 -12.91838 -12.80753 -12.66772 -12.58494 -12.50560 -12.37004 -11.98339 -11.89428 -11.77429 -11.69967 -11.65774 -11.44687 -11.28295 -11.16293 -10.80774 -10.25727 -9.93235 -9.61100 -9.35966 -8.67727 -8.34992 -6.13410 1.25887 1.30118 1.41201 1.46073 1.57410 1.59500 2.13820 2.27111 2.99034 3.12232 3.25891 3.65002 3.72766 3.79885 3.93723 3.99397 4.05884 4.11965 4.16795 4.25240 4.27097 4.34085 4.38215 4.43537 4.49483 4.57110 4.62712 4.65614 4.69556 4.72303 4.82271 4.87996 4.92420 4.97694 5.02716 5.04461 5.07164 5.09456 5.12467 5.14078 5.17739 5.26546 5.38402 5.41456 5.53950 5.61982 5.72708 5.96815 6.14325 6.19599 6.33749 6.36940 7.06060 7.17592 8.74543 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002133 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.462257 B =13124.354953 C =14492.338114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.119 4.119 4 C -0.085 4.085 5 C 0.076 3.924 6 N -0.698 5.698 7 C 0.098 3.902 8 H 0.055 0.945 9 C -0.141 4.141 10 C -0.094 4.094 11 H 0.056 0.944 12 C -0.108 4.108 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.607 5.607 16 C 0.530 3.470 17 O -0.567 6.567 18 C -0.122 4.122 19 S -0.153 6.153 20 C -0.544 4.544 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.124 3.876 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.338 0.662 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.271 0.729 51 H 0.080 0.920 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 23.893 -18.068 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.130 4.130 3 C -0.175 4.175 4 C -0.122 4.122 5 C -0.053 4.053 6 N -0.330 5.330 7 C -0.012 4.012 8 H 0.072 0.928 9 C -0.199 4.199 10 C -0.114 4.114 11 H 0.074 0.926 12 C -0.146 4.146 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.341 5.341 16 C 0.317 3.683 17 O -0.446 6.446 18 C -0.273 4.273 19 S 0.074 5.926 20 C -0.692 4.692 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.199 1.199 28 C 0.002 3.998 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.156 0.844 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.098 0.902 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.418 24.795 -16.165 29.926 hybrid contribution -0.616 -1.943 -1.013 2.276 sum -5.033 22.851 -17.178 29.027 Atomic orbital electron populations 1.23819 0.95335 1.02258 1.02558 1.21840 0.95561 0.95991 0.99622 1.20885 1.00147 0.93866 1.02641 1.20645 1.00001 0.94482 0.97110 1.21853 0.95786 0.91962 0.95717 1.60583 1.48464 1.05664 1.18260 1.21476 0.98079 0.92666 0.88981 0.92755 1.21907 0.96254 1.00157 1.01543 1.21617 0.97789 0.95201 0.96780 0.92570 1.21608 1.03302 0.95266 0.94429 1.21909 0.98073 0.96552 1.00252 1.22067 0.99834 1.00285 0.80433 1.48169 1.70058 1.08181 1.07712 1.20139 0.75986 0.87870 0.84260 1.90673 1.49763 1.77828 1.26297 1.23360 1.05866 0.94691 1.03417 1.85603 1.93243 1.04834 1.08898 1.23226 1.55792 0.92794 0.97418 0.89910 1.26156 0.94127 1.04622 0.94370 1.70195 1.47202 1.34968 1.02431 0.84886 0.78026 0.75880 0.79033 1.17914 1.19912 1.19924 1.21653 0.98967 0.78663 1.00508 0.88890 0.87442 0.90745 0.91252 0.91781 0.92242 0.91078 0.90523 0.95337 0.84419 0.92752 0.90506 0.92683 0.90086 0.89680 0.92763 0.87840 0.89708 0.89159 0.87692 0.87611 0.91999 0.90162 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 13.89 67.78 0.94 -1.97 16 2 C -0.13 -1.93 5.31 -16.48 -0.09 -2.02 16 3 C -0.12 -1.40 10.03 71.24 0.71 -0.69 16 4 C -0.08 -1.42 5.64 29.85 0.17 -1.25 16 5 C 0.08 1.20 5.47 86.30 0.47 1.67 16 6 N -0.70 -12.81 5.69 -491.58 -2.80 -15.61 16 7 C 0.10 1.49 2.44 44.92 0.11 1.60 16 8 H 0.05 0.76 7.80 -2.39 -0.02 0.74 16 9 C -0.14 -1.88 8.72 71.98 0.63 -1.26 16 10 C -0.09 -1.67 2.02 -10.72 -0.02 -1.70 16 11 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 12 C -0.11 -1.36 4.77 30.62 0.15 -1.22 16 13 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 14 C 0.10 1.86 6.34 86.36 0.55 2.41 16 15 N -0.61 -17.09 2.97 -818.92 -2.43 -19.52 16 16 C 0.53 20.94 7.72 87.65 0.68 21.62 16 17 O -0.57 -27.69 15.28 -3.04 -0.05 -27.73 16 18 C -0.12 -5.06 4.50 71.23 0.32 -4.74 16 19 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 20 C -0.54 -31.47 9.50 67.96 0.65 -30.83 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 24 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 C 0.12 3.05 5.25 86.36 0.45 3.50 16 29 H 0.09 1.37 7.99 -2.91 -0.02 1.34 16 30 H 0.11 1.27 8.04 -2.91 -0.02 1.24 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.71 8.06 -2.38 -0.02 0.69 16 33 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.06 1.09 7.99 -2.38 -0.02 1.07 16 35 H 0.07 1.31 8.10 -2.39 -0.02 1.30 16 36 H 0.08 1.14 7.43 -2.39 -0.02 1.12 16 37 H 0.03 0.45 8.05 -2.39 -0.02 0.43 16 38 H 0.34 7.03 8.21 -89.70 -0.74 6.29 16 39 H 0.05 0.88 6.32 -2.39 -0.02 0.87 16 40 H 0.08 0.76 6.46 -2.39 -0.02 0.74 16 41 H 0.05 0.71 7.45 -2.39 -0.02 0.69 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.87 6.50 -2.38 -0.02 0.85 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.08 1.73 5.93 -2.39 -0.01 1.72 16 47 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.10 3.95 7.69 -2.40 -0.02 3.93 16 49 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 50 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.08 1.77 6.18 -2.38 -0.01 1.76 16 52 H 0.07 2.14 6.55 -2.39 -0.02 2.13 16 Total: -1.00 -75.75 417.51 2.39 -73.37 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.15 Total: 25.20 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 6.37 Total: -15.42 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -4.95 Total: -91.46 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -75.75 2.39 -73.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271623923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.587 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds