Wall clock time and date at job start Sat Apr 11 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50693 * 119.99845 * 2 1 4 4 C 1.30994 * 119.99659 * 179.97438 * 2 1 3 5 5 C 1.50701 * 120.00521 * 0.02562 * 4 2 1 6 6 N 1.46900 * 109.47089 * 125.00023 * 5 4 2 7 7 C 1.46906 * 110.99949 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46798 * 324.99722 * 7 6 5 9 9 C 1.52999 * 109.47091 * 84.99839 * 7 6 5 10 10 C 1.53001 * 109.46986 * 205.00079 * 7 6 5 11 11 H 1.08994 * 109.49731 * 60.05715 * 10 7 6 12 12 C 1.53034 * 109.52436 * 180.14387 * 10 7 6 13 13 C 1.53346 * 109.61010 * 181.33873 * 12 10 7 14 14 C 1.53195 * 109.14901 * 298.71225 * 13 12 10 15 15 N 1.46919 * 108.89273 * 54.57640 * 14 13 12 16 16 C 1.34780 * 120.63395 * 126.29715 * 15 14 13 17 17 O 1.21281 * 120.00120 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99750 * 0.02562 * 16 15 14 19 19 S 1.80993 * 109.47149 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00028 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99732 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00016 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99978 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47317 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46913 * 120.00256 * 24 22 20 27 27 H 1.48504 * 109.46808 * 240.00126 * 24 22 20 28 28 C 1.46933 * 118.74003 * 306.32349 * 15 14 13 29 29 H 1.09004 * 109.47247 * 240.00376 * 1 2 3 30 30 H 1.09001 * 109.47363 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47625 * 120.00245 * 1 2 3 32 32 H 1.09009 * 109.47039 * 269.99873 * 3 2 1 33 33 H 1.09003 * 109.47603 * 29.99927 * 3 2 1 34 34 H 1.09000 * 109.47275 * 149.99856 * 3 2 1 35 35 H 1.08007 * 119.99587 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.46596 * 5.00001 * 5 4 2 37 37 H 1.08998 * 109.47525 * 245.00021 * 5 4 2 38 38 H 1.00892 * 111.00169 * 56.04516 * 6 5 4 39 39 H 1.08997 * 109.47395 * 60.00248 * 9 7 6 40 40 H 1.09003 * 109.46816 * 179.97438 * 9 7 6 41 41 H 1.09004 * 109.46750 * 299.99623 * 9 7 6 42 42 H 1.08999 * 109.45836 * 301.35295 * 12 10 7 43 43 H 1.09001 * 109.45754 * 61.32178 * 12 10 7 44 44 H 1.08997 * 109.68637 * 178.74435 * 13 12 10 45 45 H 1.09002 * 109.47277 * 58.54691 * 13 12 10 46 46 H 1.09002 * 109.58720 * 294.71670 * 14 13 12 47 47 H 1.08996 * 109.58651 * 174.43567 * 14 13 12 48 48 H 1.09003 * 109.46873 * 300.00082 * 18 16 15 49 49 H 1.09001 * 109.46886 * 59.99494 * 18 16 15 50 50 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 51 51 H 1.08994 * 109.58580 * 173.39910 * 28 15 14 52 52 H 1.09006 * 109.57831 * 293.67403 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4084 -2.4396 0.0005 6 7 1.8521 -3.2611 -1.1337 7 6 1.1369 -4.5439 -1.1661 8 1 0.9483 -4.8806 -0.1467 9 6 -0.1943 -4.3673 -1.8994 10 6 1.9880 -5.5839 -1.8975 11 1 2.9360 -5.7108 -1.3748 12 6 1.2425 -6.9199 -1.9351 13 6 2.1080 -7.9725 -2.6384 14 6 2.3742 -7.5235 -4.0786 15 7 2.9592 -6.1759 -4.0564 16 6 4.1214 -5.9212 -4.6895 17 8 4.5942 -4.8047 -4.6633 18 6 4.8334 -7.0238 -5.4300 19 16 6.3517 -6.3720 -6.1686 20 6 6.9629 -7.8292 -6.9482 21 1 6.4109 -8.7543 -6.8720 22 6 8.1538 -7.7881 -7.6600 23 7 8.8268 -6.6607 -7.7523 24 14 8.8021 -9.3332 -8.4858 25 1 7.8671 -10.4589 -8.2334 26 1 8.9149 -9.1025 -9.9484 27 1 10.1393 -9.6663 -7.9325 28 6 2.2534 -5.1113 -3.3302 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5139 -0.8899 32 1 2.4421 1.6197 -1.0277 33 1 1.6714 2.0648 0.5138 34 1 3.2128 1.1748 0.5138 35 1 3.2420 -1.1345 0.0009 36 1 0.3402 -2.2423 -0.0895 37 1 1.6025 -2.9713 0.9320 38 1 2.8505 -3.4040 -1.1080 39 1 -0.0057 -4.0306 -2.9187 40 1 -0.7247 -5.3192 -1.9238 41 1 -0.8006 -3.6263 -1.3782 42 1 1.0307 -7.2463 -0.9170 43 1 0.3061 -6.7980 -2.4796 44 1 1.5875 -8.9302 -2.6462 45 1 3.0550 -8.0770 -2.1089 46 1 1.4371 -7.5059 -4.6351 47 1 3.0688 -8.2155 -4.5546 48 1 5.0822 -7.8262 -4.7354 49 1 4.1849 -7.4115 -6.2156 50 1 9.6592 -6.6321 -8.2494 51 1 2.8693 -4.2123 -3.3103 52 1 1.3075 -4.8952 -3.8272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271627688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:14 Heat of formation + Delta-G solvation = -57.018236 kcal Electronic energy + Delta-G solvation = -27498.569781 eV Core-core repulsion = 23815.887897 eV Total energy + Delta-G solvation = -3682.681884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31592 -39.43474 -38.06877 -36.56408 -34.59320 -34.00391 -32.56642 -31.27437 -29.51246 -28.91206 -28.31673 -27.69903 -26.15792 -25.23358 -23.87761 -22.33511 -20.98713 -20.04634 -19.46646 -18.85973 -18.13344 -17.15050 -16.88859 -16.73118 -16.46317 -16.26428 -15.91509 -15.73072 -15.57180 -15.06134 -14.90287 -14.71823 -14.59178 -14.51737 -14.23093 -13.94572 -13.51254 -13.49106 -13.34442 -13.26458 -13.16126 -13.07624 -12.91879 -12.76798 -12.70255 -12.59839 -12.34610 -12.18054 -11.87129 -11.76558 -11.67339 -11.64056 -11.44415 -11.30425 -11.16462 -10.81004 -10.26022 -9.78061 -9.59880 -9.22700 -8.68135 -8.35136 -6.13681 1.23726 1.25640 1.41102 1.45854 1.57265 1.59201 2.13584 2.26907 2.98880 3.25490 3.27377 3.65616 3.72339 3.80037 3.91726 4.02899 4.08356 4.11009 4.17591 4.24912 4.36336 4.41512 4.43215 4.46230 4.49404 4.56643 4.60320 4.64070 4.70052 4.70706 4.83686 4.87885 4.92321 4.93360 5.00508 5.04674 5.06600 5.08562 5.12748 5.13986 5.17886 5.25579 5.38584 5.41297 5.54097 5.61801 5.77844 6.00767 6.17921 6.19508 6.33664 6.37530 7.05868 7.17345 8.74448 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002238 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.634134 B =12506.630478 C =14110.544415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.180 4.180 5 C 0.092 3.908 6 N -0.694 5.694 7 C 0.097 3.903 8 H 0.057 0.943 9 C -0.141 4.141 10 C -0.094 4.094 11 H 0.056 0.944 12 C -0.108 4.108 13 C -0.130 4.130 14 C 0.095 3.905 15 N -0.607 5.607 16 C 0.529 3.471 17 O -0.567 6.567 18 C -0.122 4.122 19 S -0.154 6.154 20 C -0.544 4.544 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.124 3.876 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.336 0.664 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.271 0.729 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.717 2.464 18.565 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.129 4.129 3 C -0.176 4.176 4 C -0.199 4.199 5 C -0.036 4.036 6 N -0.325 5.325 7 C -0.013 4.013 8 H 0.075 0.925 9 C -0.199 4.199 10 C -0.113 4.113 11 H 0.074 0.926 12 C -0.146 4.146 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.341 5.341 16 C 0.317 3.683 17 O -0.446 6.446 18 C -0.273 4.273 19 S 0.073 5.927 20 C -0.692 4.692 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.199 1.199 28 C 0.002 3.998 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.154 0.846 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.334 4.491 18.103 29.873 hybrid contribution 1.089 -2.039 0.024 2.312 sum -22.245 2.451 18.128 28.801 Atomic orbital electron populations 1.20862 0.91279 1.02940 1.02200 1.21861 0.96808 0.95112 0.99087 1.20892 0.99752 0.94798 1.02181 1.22571 0.99138 0.94136 1.04029 1.21071 0.99908 0.91452 0.91207 1.60619 1.09985 1.17014 1.44908 1.21502 0.94374 0.87314 0.98091 0.92550 1.21906 0.95269 1.02229 1.00447 1.21606 0.98810 0.96338 0.94580 0.92591 1.21656 0.98633 0.92270 1.02016 1.21967 1.00672 1.00052 0.94084 1.22073 0.99814 0.81692 0.99069 1.48171 1.21561 1.12506 1.51867 1.20152 0.80913 0.88552 0.78684 1.90674 1.66572 1.25231 1.62141 1.23356 1.00646 1.00597 1.02668 1.85614 1.22067 1.18658 1.66344 1.23219 1.11183 0.96497 1.38260 0.89900 1.26162 0.95833 1.00962 0.96343 1.70197 1.15931 1.28089 1.40604 0.84885 0.78182 0.77128 0.77617 1.17898 1.19910 1.19910 1.21642 0.96590 0.89797 0.91729 0.90850 0.91253 0.91599 0.91660 0.90638 0.92078 0.88447 0.89465 0.94482 0.84550 0.92917 0.90412 0.92608 0.90000 0.89677 0.87763 0.92768 0.89185 0.89714 0.87676 0.87606 0.91997 0.91571 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.53 71.24 0.61 -0.88 16 2 C -0.13 -2.12 6.05 -16.48 -0.10 -2.22 16 3 C -0.12 -1.76 9.97 71.23 0.71 -1.05 16 4 C -0.18 -3.35 9.36 25.65 0.24 -3.11 16 5 C 0.09 1.52 5.72 85.56 0.49 2.01 16 6 N -0.69 -13.37 5.68 -495.57 -2.81 -16.18 16 7 C 0.10 1.50 2.45 44.91 0.11 1.61 16 8 H 0.06 0.77 7.80 -2.39 -0.02 0.75 16 9 C -0.14 -1.90 8.72 71.98 0.63 -1.27 16 10 C -0.09 -1.69 2.03 -10.72 -0.02 -1.71 16 11 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 12 C -0.11 -1.36 4.78 30.72 0.15 -1.22 16 13 C -0.13 -1.88 6.11 30.78 0.19 -1.70 16 14 C 0.10 1.87 6.33 86.36 0.55 2.42 16 15 N -0.61 -17.30 2.97 -818.90 -2.44 -19.74 16 16 C 0.53 21.13 7.72 87.66 0.68 21.81 16 17 O -0.57 -28.01 15.27 -3.03 -0.05 -28.06 16 18 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 19 S -0.15 -8.81 20.57 -56.49 -1.16 -9.97 16 20 C -0.54 -31.51 9.50 67.96 0.65 -30.86 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.67 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.76 13.22 21.65 0.29 -56.48 16 24 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.12 3.12 5.25 86.36 0.45 3.57 16 29 H 0.07 0.79 7.85 -2.38 -0.02 0.77 16 30 H 0.07 0.74 7.94 -2.39 -0.02 0.72 16 31 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.07 0.87 8.05 -2.39 -0.02 0.85 16 34 H 0.06 0.89 8.06 -2.39 -0.02 0.87 16 35 H 0.10 1.97 8.04 -2.91 -0.02 1.95 16 36 H 0.09 1.30 5.09 -2.39 -0.01 1.29 16 37 H 0.04 0.58 8.06 -2.39 -0.02 0.56 16 38 H 0.34 7.41 8.20 -89.70 -0.74 6.68 16 39 H 0.05 0.88 6.32 -2.39 -0.02 0.86 16 40 H 0.08 0.76 6.46 -2.39 -0.02 0.75 16 41 H 0.05 0.71 7.45 -2.38 -0.02 0.69 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.87 6.50 -2.39 -0.02 0.86 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.08 1.75 5.93 -2.39 -0.01 1.73 16 48 H 0.11 3.98 7.69 -2.39 -0.02 3.96 16 49 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 50 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.07 2.14 6.54 -2.39 -0.02 2.13 16 52 H 0.08 1.81 6.19 -2.38 -0.01 1.79 16 Total: -1.00 -76.78 413.81 2.13 -74.66 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.16 Total: 25.98 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 6.11 Total: -16.21 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -4.96 Total: -92.40 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.05 Total: -28.06 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -76.78 2.13 -74.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271627688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.640 kcal (2) G-P(sol) polarization free energy of solvation -76.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds