Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00365 * 2 1 4 4 C 1.50703 * 119.99848 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46970 * 95.00252 * 4 2 1 6 6 N 1.46900 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.46898 * 111.00097 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47468 * 185.18006 * 7 6 5 9 9 H 1.09008 * 109.58896 * 298.07483 * 8 7 6 10 10 C 1.53193 * 109.58786 * 58.50223 * 8 7 6 11 11 H 1.09000 * 109.49810 * 294.37908 * 10 8 7 12 12 C 1.53001 * 109.49659 * 54.47170 * 10 8 7 13 13 C 1.53040 * 109.31338 * 174.42453 * 10 8 7 14 14 C 1.53042 * 109.53768 * 298.63258 * 13 10 8 15 15 C 1.53192 * 109.30933 * 61.36895 * 14 13 10 16 16 N 1.46925 * 108.77806 * 305.36372 * 15 14 13 17 17 C 1.34781 * 120.63000 * 233.59338 * 16 15 14 18 18 O 1.21282 * 119.99659 * 185.40670 * 17 16 15 19 19 C 1.50694 * 120.00122 * 5.39656 * 17 16 15 20 20 S 1.80995 * 109.47127 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00137 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99881 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00387 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00399 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99529 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47160 * 90.00432 * 25 23 21 27 27 H 1.48507 * 109.46952 * 209.99891 * 25 23 21 28 28 H 1.48496 * 109.47300 * 329.99808 * 25 23 21 29 29 H 1.08001 * 120.00213 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00019 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47135 * 270.00150 * 3 2 1 32 32 H 1.08997 * 109.46914 * 29.99611 * 3 2 1 33 33 H 1.08995 * 109.47531 * 149.99686 * 3 2 1 34 34 H 1.08995 * 109.47108 * 335.00632 * 4 2 1 35 35 H 1.08997 * 109.47092 * 214.99677 * 4 2 1 36 36 H 1.09003 * 109.47353 * 59.99812 * 5 4 2 37 37 H 1.09001 * 109.47216 * 299.99559 * 5 4 2 38 38 H 1.00901 * 110.99882 * 303.94585 * 6 5 4 39 39 H 1.08998 * 109.47447 * 305.18333 * 7 6 5 40 40 H 1.09007 * 109.47258 * 65.17701 * 7 6 5 41 41 H 1.09007 * 109.46609 * 59.99979 * 12 10 8 42 42 H 1.08991 * 109.47425 * 179.97438 * 12 10 8 43 43 H 1.08997 * 109.46999 * 300.00579 * 12 10 8 44 44 H 1.09001 * 109.45849 * 178.61465 * 13 10 8 45 45 H 1.08999 * 109.44887 * 58.64871 * 13 10 8 46 46 H 1.08990 * 109.49909 * 301.41796 * 14 13 10 47 47 H 1.09004 * 109.49835 * 181.31683 * 14 13 10 48 48 H 1.09003 * 109.58513 * 185.57299 * 15 14 13 49 49 H 1.08998 * 109.59051 * 65.15052 * 15 14 13 50 50 H 1.09004 * 109.47636 * 300.00707 * 19 17 16 51 51 H 1.09006 * 109.46906 * 60.00394 * 19 17 16 52 52 H 0.96995 * 119.99896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4363 6 7 3.1613 -2.9571 -1.4358 7 6 3.5275 -3.3541 -2.8018 8 6 4.1736 -4.7407 -2.7741 9 1 5.0870 -4.7065 -2.1802 10 6 3.1972 -5.7501 -2.1621 11 1 3.0268 -5.5022 -1.1144 12 6 1.8698 -5.7014 -2.9214 13 6 3.7928 -7.1562 -2.2641 14 6 4.0017 -7.5180 -3.7364 15 6 4.9873 -6.5286 -4.3661 16 7 4.4930 -5.1629 -4.1447 17 6 4.3357 -4.3133 -5.1792 18 8 4.0214 -3.1600 -4.9742 19 6 4.5507 -4.7964 -6.5903 20 16 4.2671 -3.4317 -7.7449 21 6 4.5771 -4.2537 -9.2723 22 1 4.8504 -5.2986 -9.2774 23 6 4.4712 -3.5583 -10.4688 24 7 4.7033 -4.1722 -11.6098 25 14 3.9992 -1.7509 -10.4598 26 1 5.2264 -0.9192 -10.3723 27 1 3.2680 -1.4240 -11.7104 28 1 3.1280 -1.4726 -9.2899 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 2.2452 1.6197 -1.0277 32 1 1.4745 2.0647 0.5138 33 1 3.0159 1.1748 0.5138 34 1 1.4385 -2.0853 0.4351 35 1 2.9742 -1.1986 0.5899 36 1 3.0523 -0.9044 -1.8710 37 1 1.5167 -1.7911 -2.0257 38 1 3.9765 -2.9041 -0.8436 39 1 2.6331 -3.3824 -3.4242 40 1 4.2335 -2.6325 -3.2131 41 1 2.0410 -5.9508 -3.9687 42 1 1.1756 -6.4200 -2.4860 43 1 1.4475 -4.6990 -2.8510 44 1 3.1108 -7.8733 -1.8072 45 1 4.7503 -7.1833 -1.7440 46 1 3.0486 -7.4666 -4.2624 47 1 4.4041 -8.5284 -3.8092 48 1 5.0640 -6.7205 -5.4364 49 1 5.9667 -6.6425 -3.9014 50 1 5.5736 -5.1573 -6.6990 51 1 3.8546 -5.6067 -6.8069 52 1 4.6296 -3.6861 -12.4459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271694407.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -37.354629 kcal Electronic energy + Delta-G solvation = -28292.108918 eV Core-core repulsion = 24610.279712 eV Total energy + Delta-G solvation = -3681.829206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80593 -38.83734 -38.16787 -36.24242 -34.70094 -34.55458 -33.03708 -31.04916 -30.04211 -28.15300 -27.93895 -27.68759 -26.57339 -25.03514 -23.40991 -22.56446 -21.46887 -19.88098 -19.33729 -19.15236 -18.10329 -17.26569 -17.08228 -16.78038 -16.72585 -16.03545 -15.88126 -15.63898 -15.40723 -15.26128 -15.18228 -14.97183 -14.72684 -14.40753 -14.23350 -14.16916 -13.96322 -13.58127 -13.40567 -13.36566 -13.08752 -13.02936 -12.81915 -12.69611 -12.58195 -12.44864 -12.37462 -11.98361 -11.94836 -11.88401 -11.79079 -11.72736 -11.33702 -11.19346 -11.17444 -10.53875 -10.50992 -9.93858 -9.58569 -9.19636 -9.01072 -8.53507 -6.23945 0.96312 1.28582 1.30558 1.43684 1.51537 1.54777 2.04336 2.22643 2.66519 2.84712 3.20415 3.57987 3.81549 3.85456 3.95865 3.98218 4.07518 4.10210 4.17420 4.23316 4.25543 4.34276 4.39177 4.44643 4.51222 4.60349 4.64762 4.68776 4.71895 4.79503 4.80721 4.88271 4.96947 5.01617 5.02732 5.05926 5.07613 5.10183 5.14389 5.19048 5.29447 5.34682 5.38746 5.55051 5.68920 5.71042 5.75192 5.96659 5.98596 6.09447 6.31918 6.50621 6.91782 7.14407 8.59043 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.003247 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.138003 B = 8621.379201 C =11200.718485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.121 4.121 4 C -0.072 4.072 5 C 0.076 3.924 6 N -0.682 5.682 7 C 0.075 3.925 8 C 0.157 3.843 9 H 0.084 0.916 10 C -0.081 4.081 11 H 0.100 0.900 12 C -0.139 4.139 13 C -0.111 4.111 14 C -0.135 4.135 15 C 0.099 3.901 16 N -0.599 5.599 17 C 0.533 3.467 18 O -0.550 6.550 19 C -0.107 4.107 20 S -0.174 6.174 21 C -0.527 4.527 22 H 0.061 0.939 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.239 1.239 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.016 0.984 37 H 0.051 0.949 38 H 0.345 0.655 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.107 0.893 51 H 0.104 0.896 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -2.270 28.177 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.137 4.137 3 C -0.178 4.178 4 C -0.109 4.109 5 C -0.054 4.054 6 N -0.315 5.315 7 C -0.053 4.053 8 C 0.054 3.946 9 H 0.102 0.898 10 C -0.100 4.100 11 H 0.118 0.882 12 C -0.196 4.196 13 C -0.149 4.149 14 C -0.173 4.173 15 C -0.023 4.023 16 N -0.333 5.333 17 C 0.320 3.680 18 O -0.428 6.428 19 C -0.258 4.258 20 S 0.053 5.947 21 C -0.675 4.675 22 H 0.080 0.920 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.163 1.163 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.114 0.886 48 H 0.101 0.899 49 H 0.110 0.890 50 H 0.125 0.875 51 H 0.122 0.878 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.851 -0.988 28.275 28.553 hybrid contribution 0.879 -0.086 -1.598 1.826 sum -2.971 -1.074 26.677 26.863 Atomic orbital electron populations 1.23844 0.95381 1.02332 1.02091 1.21891 0.95756 0.96153 0.99932 1.20895 1.00489 0.94361 1.02005 1.20576 1.00631 0.94268 0.95457 1.21722 0.97364 0.89344 0.96948 1.60449 1.28980 1.31247 1.10799 1.22286 0.99411 0.95071 0.88560 1.21333 0.98151 0.94011 0.81128 0.89796 1.21332 0.93709 0.94392 1.00606 0.88187 1.21780 0.97406 1.01009 0.99422 1.21580 1.01865 0.95609 0.95805 1.21967 0.99341 0.99248 0.96763 1.22053 0.98449 0.79429 1.02359 1.48092 1.65278 1.13889 1.06025 1.19969 0.76461 0.85436 0.86147 1.90710 1.48360 1.19226 1.84491 1.23313 1.06245 1.02028 0.94196 1.84658 1.91824 1.18132 1.00118 1.22447 1.53807 0.99439 0.91812 0.92048 1.25547 0.93557 1.02735 0.94075 1.70013 1.48279 1.38873 0.98310 0.85879 0.80472 0.79994 0.80087 1.18658 1.18284 1.16260 0.88339 0.87847 0.92146 0.91026 0.91216 0.90365 0.90276 0.96546 0.93060 0.83693 0.92621 0.94859 0.94569 0.91915 0.94079 0.90451 0.90391 0.92369 0.88596 0.89891 0.89021 0.87457 0.87769 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 13.89 67.78 0.94 -2.36 16 2 C -0.14 -2.32 5.31 -16.48 -0.09 -2.41 16 3 C -0.12 -1.80 10.03 71.24 0.71 -1.08 16 4 C -0.07 -1.17 5.64 29.85 0.17 -1.01 16 5 C 0.08 1.63 5.66 86.30 0.49 2.12 16 6 N -0.68 -13.83 5.77 -513.89 -2.96 -16.79 16 7 C 0.08 2.01 3.01 86.30 0.26 2.27 16 8 C 0.16 3.38 2.90 44.97 0.13 3.51 16 9 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 10 C -0.08 -1.41 2.54 -10.72 -0.03 -1.44 16 11 H 0.10 1.59 7.76 -2.39 -0.02 1.57 16 12 C -0.14 -3.01 8.20 71.98 0.59 -2.42 16 13 C -0.11 -1.45 5.43 30.62 0.17 -1.28 16 14 C -0.14 -2.02 5.74 30.67 0.18 -1.85 16 15 C 0.10 1.85 6.35 86.36 0.55 2.39 16 16 N -0.60 -15.11 2.41 -795.03 -1.92 -17.03 16 17 C 0.53 18.65 7.55 87.65 0.66 19.31 16 18 O -0.55 -22.79 11.41 -3.04 -0.03 -22.82 16 19 C -0.11 -4.14 4.51 71.23 0.32 -3.82 16 20 S -0.17 -8.88 18.55 -56.49 -1.05 -9.92 16 21 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 22 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 23 C 0.05 2.73 5.50 84.86 0.47 3.20 16 24 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 25 Si 0.91 45.41 27.74 68.60 1.90 47.32 16 26 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 29 H 0.10 1.58 7.99 -2.91 -0.02 1.56 16 30 H 0.10 1.51 8.04 -2.91 -0.02 1.48 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.91 8.06 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.08 1.26 7.99 -2.39 -0.02 1.24 16 35 H 0.08 1.09 8.10 -2.39 -0.02 1.08 16 36 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.35 5.65 8.79 -89.69 -0.79 4.86 16 39 H 0.06 1.86 5.50 -2.39 -0.01 1.85 16 40 H 0.03 1.12 6.27 -2.38 -0.01 1.10 16 41 H 0.04 0.91 5.97 -2.38 -0.01 0.89 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 1.05 6.39 -2.39 -0.02 1.03 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 1.07 6.33 -2.39 -0.02 1.06 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.08 1.68 5.93 -2.39 -0.01 1.66 16 49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.11 3.86 7.72 -2.39 -0.02 3.84 16 51 H 0.10 3.84 7.91 -2.39 -0.02 3.82 16 52 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -70.39 409.53 2.50 -67.88 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.06 Total: 22.26 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 6.20 Total: -15.09 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.58 Total: -89.63 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.03 Total: -22.82 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.92 kcal Total: -70.39 2.50 -67.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271694407.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.530 kcal (2) G-P(sol) polarization free energy of solvation -70.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds