Wall clock time and date at job start Sat Apr 11 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99933 * 2 1 4 4 C 1.50700 * 120.00308 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46715 * 95.00744 * 4 2 1 6 6 N 1.46902 * 109.47244 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00516 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47460 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.69646 * 309.22440 * 8 7 6 10 10 C 1.53192 * 109.58572 * 188.86662 * 8 7 6 11 11 H 1.09000 * 109.49830 * 305.52589 * 10 8 7 12 12 C 1.52999 * 109.52448 * 65.61201 * 10 8 7 13 13 C 1.53045 * 109.30876 * 185.57725 * 10 8 7 14 14 C 1.53032 * 109.53995 * 61.36531 * 13 10 8 15 15 C 1.53196 * 109.31466 * 298.63472 * 14 13 10 16 16 N 1.46927 * 108.89069 * 54.56056 * 15 14 13 17 17 C 1.34774 * 120.62597 * 126.46640 * 16 15 14 18 18 O 1.21284 * 120.00179 * 185.92112 * 17 16 15 19 19 C 1.50703 * 120.00326 * 5.92192 * 17 16 15 20 20 S 1.80995 * 109.47290 * 180.02562 * 19 17 16 21 21 C 1.76202 * 100.00142 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99722 * 359.97438 * 21 20 19 23 23 C 1.38800 * 119.99893 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99672 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00245 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47495 * 89.99773 * 25 23 21 27 27 H 1.48504 * 109.47187 * 210.00146 * 25 23 21 28 28 H 1.48507 * 109.47183 * 329.99836 * 25 23 21 29 29 H 1.07999 * 119.99910 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00396 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47491 * 269.99455 * 3 2 1 32 32 H 1.09009 * 109.47076 * 29.99443 * 3 2 1 33 33 H 1.09000 * 109.47383 * 149.99470 * 3 2 1 34 34 H 1.08995 * 109.47083 * 335.00532 * 4 2 1 35 35 H 1.09000 * 109.47432 * 215.00351 * 4 2 1 36 36 H 1.08995 * 109.47518 * 60.00054 * 5 4 2 37 37 H 1.09001 * 109.47255 * 299.99618 * 5 4 2 38 38 H 1.00906 * 110.99597 * 303.95188 * 6 5 4 39 39 H 1.09000 * 109.47052 * 59.99612 * 7 6 5 40 40 H 1.08997 * 109.46697 * 300.00088 * 7 6 5 41 41 H 1.08998 * 109.47050 * 179.85183 * 12 10 8 42 42 H 1.09000 * 109.46618 * 299.84928 * 12 10 8 43 43 H 1.08997 * 109.47689 * 59.84753 * 12 10 8 44 44 H 1.09006 * 109.45763 * 301.34039 * 13 10 8 45 45 H 1.09000 * 109.45919 * 181.38644 * 13 10 8 46 46 H 1.08998 * 109.50063 * 178.68107 * 14 13 10 47 47 H 1.09003 * 109.50039 * 58.58599 * 14 13 10 48 48 H 1.08999 * 109.58927 * 174.42235 * 15 14 13 49 49 H 1.09002 * 109.58583 * 294.70528 * 15 14 13 50 50 H 1.08998 * 109.47136 * 300.00164 * 19 17 16 51 51 H 1.09004 * 109.47023 * 60.00291 * 19 17 16 52 52 H 0.97000 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6843 -1.4363 6 7 3.1616 -2.9568 -1.4359 7 6 3.5279 -3.3537 -2.8019 8 6 4.2897 -4.6800 -2.7608 9 1 5.1010 -4.6153 -2.0358 10 6 4.8634 -4.9859 -4.1479 11 1 4.0623 -4.9607 -4.8866 12 6 5.9213 -3.9401 -4.5057 13 6 5.5033 -6.3761 -4.1355 14 6 4.4389 -7.4266 -3.8106 15 6 3.8603 -7.1483 -2.4197 16 7 3.3737 -5.7626 -2.3754 17 6 2.1106 -5.4904 -1.9922 18 8 1.6868 -4.3561 -2.0620 19 6 1.2247 -6.5953 -1.4771 20 16 -0.3978 -5.9174 -1.0482 21 6 -1.2044 -7.3822 -0.4926 22 1 -0.6758 -8.3240 -0.4959 23 6 -2.5190 -7.3256 -0.0509 24 7 -3.1216 -8.4199 0.3636 25 14 -3.4334 -5.6967 -0.0460 26 1 -4.1242 -5.5128 -1.3476 27 1 -4.4348 -5.6945 1.0506 28 1 -2.4681 -4.5877 0.1631 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4743 2.0649 0.5138 33 1 3.0158 1.1749 0.5139 34 1 1.4386 -2.0852 0.4351 35 1 2.9742 -1.1986 0.5900 36 1 3.0524 -0.9041 -1.8708 37 1 1.5169 -1.7909 -2.0258 38 1 3.9767 -2.9038 -0.8435 39 1 4.1607 -2.5854 -3.2462 40 1 2.6247 -3.4715 -3.4006 41 1 6.3308 -4.1601 -5.4916 42 1 5.4650 -2.9502 -4.5144 43 1 6.7215 -3.9647 -3.7661 44 1 6.2878 -6.4080 -3.3793 45 1 5.9341 -6.5863 -5.1144 46 1 4.8904 -8.4185 -3.8250 47 1 3.6418 -7.3784 -4.5525 48 1 3.0343 -7.8321 -2.2240 49 1 4.6360 -7.2874 -1.6667 50 1 1.1076 -7.3566 -2.2484 51 1 1.6779 -7.0416 -0.5919 52 1 -4.0402 -8.3804 0.6727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271694409.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:37 Heat of formation + Delta-G solvation = -18.900474 kcal Electronic energy + Delta-G solvation = -28812.419106 eV Core-core repulsion = 25131.390132 eV Total energy + Delta-G solvation = -3681.028974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49242 -38.42468 -38.11837 -36.15128 -34.70249 -34.62514 -33.03750 -31.11867 -29.89510 -28.11886 -27.87769 -27.45377 -26.67609 -24.46215 -23.21539 -22.35843 -21.43457 -20.40853 -19.38869 -19.20751 -17.77430 -17.20427 -17.06929 -16.63751 -16.50128 -16.06069 -15.68359 -15.67071 -15.43601 -15.02874 -14.94229 -14.78199 -14.56905 -14.31682 -14.13125 -13.93684 -13.71101 -13.49174 -13.39516 -13.31837 -13.27106 -13.00576 -12.79089 -12.70548 -12.57754 -12.50723 -12.40773 -11.93063 -11.92383 -11.85841 -11.78915 -11.60829 -11.55665 -11.17153 -11.16465 -10.44732 -9.95292 -9.83915 -9.43584 -8.92637 -8.81070 -8.51229 -6.18821 1.03256 1.29355 1.30550 1.46922 1.58932 1.92967 2.23598 2.26880 2.75138 2.87213 3.28514 3.62620 3.86769 3.92119 3.99874 4.00478 4.10072 4.15798 4.22609 4.28600 4.30134 4.37308 4.41481 4.48349 4.51148 4.60116 4.62686 4.69368 4.73567 4.76276 4.83348 4.86045 4.91247 4.94777 5.04220 5.09472 5.10440 5.15729 5.20570 5.21694 5.24456 5.29383 5.36702 5.52913 5.71178 5.73817 5.82218 6.00639 6.11294 6.28021 6.56946 6.74665 6.94636 7.53677 8.61766 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007063 B = 0.004835 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3963.606782 B = 5789.483253 C = 9430.986622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.077 4.077 5 C 0.095 3.905 6 N -0.668 5.668 7 C 0.079 3.921 8 C 0.162 3.838 9 H 0.079 0.921 10 C -0.098 4.098 11 H 0.057 0.943 12 C -0.141 4.141 13 C -0.107 4.107 14 C -0.131 4.131 15 C 0.102 3.898 16 N -0.607 5.607 17 C 0.523 3.477 18 O -0.487 6.487 19 C -0.105 4.105 20 S -0.163 6.163 21 C -0.530 4.530 22 H 0.056 0.944 23 C 0.047 3.953 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.263 1.263 27 H -0.260 1.260 28 H -0.237 1.237 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.031 0.969 37 H 0.040 0.960 38 H 0.326 0.674 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.053 0.947 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.825 12.536 -7.980 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.127 4.127 3 C -0.168 4.168 4 C -0.114 4.114 5 C -0.034 4.034 6 N -0.300 5.300 7 C -0.050 4.050 8 C 0.059 3.941 9 H 0.097 0.903 10 C -0.118 4.118 11 H 0.076 0.924 12 C -0.198 4.198 13 C -0.144 4.144 14 C -0.170 4.170 15 C -0.021 4.021 16 N -0.343 5.343 17 C 0.308 3.692 18 O -0.359 6.359 19 C -0.256 4.256 20 S 0.063 5.937 21 C -0.677 4.677 22 H 0.074 0.926 23 C -0.158 4.158 24 N -0.558 5.558 25 Si 0.737 3.263 26 H -0.188 1.188 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.144 0.856 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.112 0.888 51 H 0.111 0.889 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.455 13.744 -7.994 26.705 hybrid contribution -0.133 -1.045 0.186 1.070 sum 21.323 12.699 -7.808 26.017 Atomic orbital electron populations 1.23789 0.95942 1.01645 1.03256 1.21925 0.95376 0.96401 0.98995 1.20856 1.00200 0.93167 1.02620 1.20565 0.99959 0.93915 0.97004 1.21484 0.97272 0.89046 0.95635 1.60575 1.26972 1.31555 1.10916 1.22024 0.97779 0.94334 0.90836 1.21326 0.90848 0.85719 0.96247 0.90305 1.21482 0.98295 0.96916 0.95143 0.92434 1.21807 0.97982 0.97692 1.02362 1.21548 0.97461 0.92451 1.02970 1.21908 0.98896 1.00560 0.95601 1.21888 1.00029 0.81483 0.98706 1.47844 1.10688 1.07925 1.67855 1.19626 0.82414 0.88561 0.78581 1.90777 1.72609 1.20942 1.51549 1.23318 0.97062 1.01261 1.03965 1.84559 1.09711 1.15179 1.84223 1.22533 1.01345 0.94700 1.49167 0.92557 1.25532 0.97186 0.99987 0.93097 1.70021 1.13681 1.29412 1.42688 0.85868 0.80225 0.80931 0.79326 1.18787 1.18397 1.16139 0.90690 0.86989 0.90900 0.91046 0.90951 0.93518 0.90383 0.95093 0.94089 0.85616 0.94583 0.91993 0.91319 0.92763 0.91465 0.90540 0.90318 0.88743 0.92853 0.90660 0.89989 0.88841 0.88876 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.62 13.89 67.79 0.94 -4.68 16 2 C -0.13 -3.09 5.31 -16.48 -0.09 -3.18 16 3 C -0.11 -1.93 10.03 71.24 0.71 -1.22 16 4 C -0.08 -2.06 5.64 29.85 0.17 -1.90 16 5 C 0.09 2.62 5.28 86.30 0.46 3.08 16 6 N -0.67 -18.34 3.92 -513.90 -2.01 -20.36 16 7 C 0.08 1.96 4.23 86.30 0.36 2.32 16 8 C 0.16 3.36 2.53 44.97 0.11 3.48 16 9 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 10 C -0.10 -1.58 2.34 -10.71 -0.03 -1.61 16 11 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 12 C -0.14 -1.67 8.98 71.98 0.65 -1.02 16 13 C -0.11 -1.37 5.17 30.62 0.16 -1.21 16 14 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 15 C 0.10 2.05 6.32 86.36 0.55 2.60 16 16 N -0.61 -15.67 2.98 -794.95 -2.37 -18.03 16 17 C 0.52 18.54 7.40 87.66 0.65 19.19 16 18 O -0.49 -19.47 9.36 -3.04 -0.03 -19.50 16 19 C -0.10 -4.25 4.57 71.24 0.33 -3.92 16 20 S -0.16 -8.49 18.55 -56.49 -1.05 -9.54 16 21 C -0.53 -31.87 10.04 67.95 0.68 -31.19 16 22 H 0.06 3.60 8.03 -2.91 -0.02 3.57 16 23 C 0.05 2.84 5.50 84.86 0.47 3.30 16 24 N -0.92 -57.38 13.97 21.65 0.30 -57.07 16 25 Si 0.91 46.40 27.74 68.60 1.90 48.30 16 26 H -0.26 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.24 -12.08 6.74 99.48 0.67 -11.41 16 29 H 0.07 2.41 7.99 -2.91 -0.02 2.38 16 30 H 0.11 2.49 8.04 -2.91 -0.02 2.47 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.09 8.06 -2.38 -0.02 1.07 16 33 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.05 1.59 7.99 -2.39 -0.02 1.57 16 35 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.04 1.42 7.88 -2.39 -0.02 1.40 16 38 H 0.33 7.61 8.71 -89.69 -0.78 6.83 16 39 H 0.04 0.75 6.25 -2.39 -0.01 0.74 16 40 H 0.06 2.01 6.31 -2.39 -0.02 1.99 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.05 0.70 6.44 -2.39 -0.02 0.69 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 1.71 5.97 -2.39 -0.01 1.69 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.09 3.63 7.44 -2.40 -0.02 3.61 16 51 H 0.09 3.66 8.13 -2.39 -0.02 3.64 16 52 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -72.07 412.04 3.11 -68.96 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.06 Total: 25.06 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 6.31 Total: -17.82 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -4.08 Total: -95.47 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.03 Total: -19.50 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.05 Total: -9.54 kcal Total: -72.07 3.11 -68.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271694409.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.063 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds