Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81406 * 102.99447 * 2 1 4 4 C 1.53009 * 109.46733 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46976 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47251 * 180.02562 * 5 4 3 7 7 C 1.46858 * 111.00201 * 190.00610 * 6 5 4 8 8 C 1.53141 * 109.45002 * 186.36082 * 7 6 5 9 9 C 1.52546 * 109.31823 * 301.73165 * 8 7 6 10 10 C 1.54131 * 110.07808 * 178.09677 * 9 8 7 11 11 C 1.54590 * 101.65439 * 94.63938 * 10 9 8 12 12 N 1.46818 * 105.49081 * 24.98872 * 11 10 9 13 13 C 1.46501 * 124.35971 * 163.11850 * 12 11 10 14 14 C 1.53002 * 109.47320 * 89.99195 * 13 12 11 15 15 C 1.50700 * 109.47081 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99814 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99915 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46745 * 90.00706 * 19 17 15 21 21 H 1.48497 * 109.46974 * 210.00276 * 19 17 15 22 22 H 1.48500 * 109.47281 * 330.00658 * 19 17 15 23 23 C 1.34570 * 111.28015 * 343.07556 * 12 11 10 24 24 O 1.21280 * 125.02846 * 180.72192 * 23 12 11 25 25 C 1.52540 * 110.49548 * 56.29524 * 9 8 7 26 26 C 1.46854 * 110.99893 * 314.35349 * 6 5 4 27 27 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47359 * 299.99697 * 1 2 3 29 29 H 1.08994 * 109.47663 * 60.00299 * 1 2 3 30 30 H 1.09000 * 109.47249 * 60.00450 * 3 2 1 31 31 H 1.08993 * 109.47156 * 299.99432 * 3 2 1 32 32 H 1.09000 * 109.46871 * 60.00236 * 4 3 2 33 33 H 1.09000 * 109.47325 * 300.00076 * 4 3 2 34 34 H 1.09008 * 109.46771 * 60.00330 * 5 4 3 35 35 H 1.09000 * 109.47330 * 300.00286 * 5 4 3 36 36 H 1.08996 * 109.47460 * 66.35913 * 7 6 5 37 37 H 1.09002 * 109.47518 * 306.35155 * 7 6 5 38 38 H 1.09000 * 109.49620 * 181.78412 * 8 7 6 39 39 H 1.08994 * 109.52563 * 61.70401 * 8 7 6 40 40 H 1.08999 * 110.98558 * 212.73329 * 10 9 8 41 41 H 1.09003 * 110.98920 * 336.54365 * 10 9 8 42 42 H 1.08999 * 110.24171 * 143.99026 * 11 10 9 43 43 H 1.09003 * 110.24136 * 265.89724 * 11 10 9 44 44 H 1.08999 * 109.47369 * 209.99540 * 13 12 11 45 45 H 1.09006 * 109.47086 * 329.99618 * 13 12 11 46 46 H 1.08999 * 109.47181 * 300.00460 * 14 13 12 47 47 H 1.08994 * 109.46830 * 60.00554 * 14 13 12 48 48 H 0.97002 * 119.99595 * 179.97438 * 18 17 15 49 49 H 1.08995 * 109.49629 * 63.67039 * 25 9 8 50 50 H 1.09006 * 109.49372 * 183.75747 * 25 9 8 51 51 H 1.09005 * 109.47396 * 293.63877 * 26 6 5 52 52 H 1.09002 * 109.47242 * 53.64684 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7422 1.9401 0.0006 5 6 4.0863 3.4308 0.0000 6 7 5.5460 3.5965 0.0000 7 6 5.9167 4.9975 0.2376 8 6 7.4306 5.1593 0.0734 9 6 8.1462 4.2320 1.0507 10 6 9.6723 4.3459 0.8673 11 6 10.0386 5.3953 1.9417 12 7 8.9783 5.3072 2.9534 13 6 9.0831 5.8496 4.3102 14 6 8.5768 7.2934 4.3229 15 6 8.6851 7.8515 5.7185 16 1 9.0764 7.2380 6.5165 17 6 8.2847 9.1454 5.9765 18 7 8.3798 9.6326 7.1945 19 14 7.6086 10.2068 4.5960 20 1 6.1364 10.0317 4.5127 21 1 7.9229 11.6323 4.8684 22 1 8.2291 9.8001 3.3096 23 6 7.8975 4.6648 2.4736 24 8 6.8748 4.4641 3.0937 25 6 7.6996 2.7885 0.8417 26 6 6.1769 2.7040 0.9808 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8030 2.2372 0.8900 31 1 1.8030 2.2371 -0.8900 32 1 4.1615 1.4704 -0.8891 33 1 4.1608 1.4706 0.8908 34 1 3.6669 3.9009 0.8896 35 1 3.6678 3.9000 -0.8904 36 1 5.6281 5.2832 1.2491 37 1 5.4029 5.6363 -0.4809 38 1 7.7107 6.1922 0.2806 39 1 7.7159 4.9027 -0.9468 40 1 10.1618 3.3931 1.0691 41 1 9.9197 4.7064 -0.1312 42 1 11.0050 5.1581 2.3865 43 1 10.0607 6.3927 1.5025 44 1 8.4803 5.2473 4.9899 45 1 10.1246 5.8271 4.6312 46 1 9.1795 7.8957 3.6432 47 1 7.5353 7.3160 4.0020 48 1 8.0985 10.5430 7.3759 49 1 7.9930 2.4576 -0.1545 50 1 8.1692 2.1504 1.5904 51 1 5.8865 3.0064 1.9869 52 1 5.8519 1.6791 0.8012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272460316.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -41.786347 kcal Electronic energy + Delta-G solvation = -28469.481483 eV Core-core repulsion = 24787.460103 eV Total energy + Delta-G solvation = -3682.021380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10465 -38.32067 -36.20077 -35.34017 -33.60400 -32.47794 -31.02606 -30.64592 -29.34996 -28.77077 -26.63650 -25.31559 -24.44522 -23.41975 -21.85775 -21.62529 -20.62547 -20.11353 -18.35521 -17.05070 -16.81347 -16.09441 -15.90763 -15.85081 -15.48409 -15.11534 -14.74764 -14.49538 -14.28915 -14.16762 -14.04680 -13.71727 -13.63172 -13.34525 -13.23975 -13.01517 -12.79798 -12.64273 -12.58763 -12.33641 -12.09076 -11.98241 -11.89286 -11.64924 -11.53503 -11.24270 -11.14504 -11.05189 -11.00742 -10.47163 -10.39197 -10.35581 -10.14448 -10.12024 -9.85578 -9.35881 -9.15774 -8.58258 -8.21010 -8.17127 -8.03077 -6.09180 -4.08118 1.31058 2.24032 2.93971 3.28333 3.35016 3.38057 3.44085 3.80666 4.32244 4.41293 4.43782 4.52118 4.60586 4.66197 4.74063 4.75619 4.86711 4.94338 5.01262 5.10590 5.19166 5.25001 5.26102 5.29039 5.32427 5.38359 5.46629 5.48304 5.58895 5.65021 5.71592 5.75610 5.80190 5.81380 5.86929 5.92570 5.93919 6.02350 6.04784 6.10326 6.27169 6.29893 6.57490 6.81671 7.02333 7.05719 7.17057 7.29990 7.63122 7.72803 8.44736 8.59092 8.93881 9.52717 11.03898 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.002519 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.259674 B =11114.448108 C =12244.175657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.267 6.267 3 C -0.082 4.082 4 C -0.107 4.107 5 C 0.062 3.938 6 N -0.533 5.533 7 C 0.049 3.951 8 C -0.091 4.091 9 C -0.095 4.095 10 C -0.125 4.125 11 C 0.100 3.900 12 N -0.614 5.614 13 C 0.136 3.864 14 C -0.023 4.023 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.521 3.479 24 O -0.527 6.527 25 C -0.088 4.088 26 C 0.034 3.966 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.264 0.736 49 H 0.076 0.924 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 -16.569 -20.614 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.041 6.041 3 C -0.231 4.231 4 C -0.145 4.145 5 C -0.068 4.068 6 N -0.258 5.258 7 C -0.078 4.078 8 C -0.129 4.129 9 C -0.099 4.099 10 C -0.162 4.162 11 C -0.023 4.023 12 N -0.347 5.347 13 C 0.016 3.984 14 C -0.061 4.061 15 C -0.559 4.559 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.192 1.192 23 C 0.308 3.692 24 O -0.404 6.404 25 C -0.126 4.126 26 C -0.094 4.094 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.035 0.965 47 H 0.033 0.967 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.270 -17.480 -20.527 27.681 hybrid contribution -1.478 2.121 0.255 2.598 sum -7.748 -15.359 -20.271 26.587 Atomic orbital electron populations 1.23370 0.94252 1.06481 1.04910 1.86954 1.07289 1.11784 1.98082 1.23375 1.00729 0.93941 1.05014 1.21482 0.91967 0.96949 1.04115 1.22036 0.88505 0.95265 1.00995 1.62048 1.07509 1.06127 1.50116 1.22134 0.95788 0.89004 1.00913 1.21379 0.94307 0.98617 0.98602 1.21083 0.96362 0.97917 0.94493 1.22694 0.93999 0.99846 0.99690 1.22070 0.91685 0.99353 0.89236 1.48627 1.15920 1.55974 1.14163 1.21582 1.01422 0.96439 0.78938 1.19877 0.96256 0.91779 0.98216 1.20962 1.43173 0.98499 0.93309 0.90814 1.24982 0.95049 0.97787 0.95406 1.69909 1.48045 1.16261 1.19678 0.86762 0.79803 0.79521 0.83088 1.20272 1.21293 1.19182 1.20497 0.83107 0.77651 0.87941 1.90635 1.27862 1.57374 1.64511 1.21355 0.95673 0.93399 1.02202 1.22439 0.94066 0.96969 0.95896 0.88120 0.90477 0.90541 0.90017 0.89979 0.90105 0.90371 0.94501 0.90754 0.93228 0.90897 0.91106 0.90088 0.90022 0.89303 0.90481 0.91275 0.90643 0.91037 0.96545 0.96712 0.92640 0.90552 0.91467 0.91547 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.76 101.05 1.09 0.34 16 2 S -0.27 -2.42 22.38 -107.50 -2.41 -4.83 16 3 C -0.08 -0.67 5.94 37.16 0.22 -0.44 16 4 C -0.11 -0.97 4.47 -26.73 -0.12 -1.09 16 5 C 0.06 0.63 5.27 -3.83 -0.02 0.61 16 6 N -0.53 -6.20 4.79 -234.52 -1.12 -7.32 16 7 C 0.05 0.63 5.21 -3.77 -0.02 0.61 16 8 C -0.09 -1.06 4.77 -26.89 -0.13 -1.19 16 9 C -0.09 -1.17 0.55 -155.50 -0.09 -1.26 16 10 C -0.12 -1.21 6.21 -25.30 -0.16 -1.37 16 11 C 0.10 1.24 7.36 -3.03 -0.02 1.22 16 12 N -0.61 -10.45 2.94 -172.46 -0.51 -10.96 16 13 C 0.14 2.77 5.87 -4.04 -0.02 2.75 16 14 C -0.02 -0.56 4.37 -27.88 -0.12 -0.68 16 15 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 16 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 19 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 23 C 0.52 8.94 6.32 -11.04 -0.07 8.87 16 24 O -0.53 -10.94 13.85 5.56 0.08 -10.86 16 25 C -0.09 -0.99 4.77 -26.89 -0.13 -1.12 16 26 C 0.03 0.41 4.64 -3.78 -0.02 0.40 16 27 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.80 6.20 -51.93 -0.32 0.47 16 34 H 0.04 0.42 8.08 -51.92 -0.42 0.00 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 37 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.70 7.89 -51.93 -0.41 0.29 16 41 H 0.09 0.67 7.87 -51.93 -0.41 0.27 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.65 7.94 -51.93 -0.41 1.24 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.01 0.38 7.57 -51.93 -0.39 -0.01 16 48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.07 1.04 5.78 -51.93 -0.30 0.74 16 52 H 0.08 0.84 5.78 -51.93 -0.30 0.54 16 LS Contribution 407.16 15.07 6.14 6.14 Total: -1.00 -33.26 407.16 -11.37 -44.63 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -9.61 Total: -1.48 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.04 Total: -5.68 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.86 Total: -45.38 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.41 Total: -4.83 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.26 -11.37 -44.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272460316.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.846 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds