Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81406 * 102.99447 * 2 1 4 4 C 1.53009 * 109.46733 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46976 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47251 * 180.02562 * 5 4 3 7 7 C 1.46858 * 111.00201 * 190.00610 * 6 5 4 8 8 C 1.53141 * 109.45002 * 186.36082 * 7 6 5 9 9 C 1.52546 * 109.31823 * 301.73165 * 8 7 6 10 10 C 1.54131 * 110.07808 * 178.09677 * 9 8 7 11 11 C 1.54590 * 101.65439 * 94.63938 * 10 9 8 12 12 N 1.46818 * 105.49081 * 24.98872 * 11 10 9 13 13 C 1.46501 * 124.35971 * 163.11850 * 12 11 10 14 14 C 1.53002 * 109.47320 * 89.99195 * 13 12 11 15 15 C 1.50700 * 109.47081 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99814 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99915 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46745 * 90.00706 * 19 17 15 21 21 H 1.48497 * 109.46974 * 210.00276 * 19 17 15 22 22 H 1.48500 * 109.47281 * 330.00658 * 19 17 15 23 23 C 1.34570 * 111.28015 * 343.07556 * 12 11 10 24 24 O 1.21280 * 125.02846 * 180.72192 * 23 12 11 25 25 C 1.52540 * 110.49548 * 56.29524 * 9 8 7 26 26 C 1.46854 * 110.99893 * 314.35349 * 6 5 4 27 27 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47359 * 299.99697 * 1 2 3 29 29 H 1.08994 * 109.47663 * 60.00299 * 1 2 3 30 30 H 1.09000 * 109.47249 * 60.00450 * 3 2 1 31 31 H 1.08993 * 109.47156 * 299.99432 * 3 2 1 32 32 H 1.09000 * 109.46871 * 60.00236 * 4 3 2 33 33 H 1.09000 * 109.47325 * 300.00076 * 4 3 2 34 34 H 1.09008 * 109.46771 * 60.00330 * 5 4 3 35 35 H 1.09000 * 109.47330 * 300.00286 * 5 4 3 36 36 H 1.08996 * 109.47460 * 66.35913 * 7 6 5 37 37 H 1.09002 * 109.47518 * 306.35155 * 7 6 5 38 38 H 1.09000 * 109.49620 * 181.78412 * 8 7 6 39 39 H 1.08994 * 109.52563 * 61.70401 * 8 7 6 40 40 H 1.08999 * 110.98558 * 212.73329 * 10 9 8 41 41 H 1.09003 * 110.98920 * 336.54365 * 10 9 8 42 42 H 1.08999 * 110.24171 * 143.99026 * 11 10 9 43 43 H 1.09003 * 110.24136 * 265.89724 * 11 10 9 44 44 H 1.08999 * 109.47369 * 209.99540 * 13 12 11 45 45 H 1.09006 * 109.47086 * 329.99618 * 13 12 11 46 46 H 1.08999 * 109.47181 * 300.00460 * 14 13 12 47 47 H 1.08994 * 109.46830 * 60.00554 * 14 13 12 48 48 H 0.97002 * 119.99595 * 179.97438 * 18 17 15 49 49 H 1.08995 * 109.49629 * 63.67039 * 25 9 8 50 50 H 1.09006 * 109.49372 * 183.75747 * 25 9 8 51 51 H 1.09005 * 109.47396 * 293.63877 * 26 6 5 52 52 H 1.09002 * 109.47242 * 53.64684 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7422 1.9401 0.0006 5 6 4.0863 3.4308 0.0000 6 7 5.5460 3.5965 0.0000 7 6 5.9167 4.9975 0.2376 8 6 7.4306 5.1593 0.0734 9 6 8.1462 4.2320 1.0507 10 6 9.6723 4.3459 0.8673 11 6 10.0386 5.3953 1.9417 12 7 8.9783 5.3072 2.9534 13 6 9.0831 5.8496 4.3102 14 6 8.5768 7.2934 4.3229 15 6 8.6851 7.8515 5.7185 16 1 9.0764 7.2380 6.5165 17 6 8.2847 9.1454 5.9765 18 7 8.3798 9.6326 7.1945 19 14 7.6086 10.2068 4.5960 20 1 6.1364 10.0317 4.5127 21 1 7.9229 11.6323 4.8684 22 1 8.2291 9.8001 3.3096 23 6 7.8975 4.6648 2.4736 24 8 6.8748 4.4641 3.0937 25 6 7.6996 2.7885 0.8417 26 6 6.1769 2.7040 0.9808 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8030 2.2372 0.8900 31 1 1.8030 2.2371 -0.8900 32 1 4.1615 1.4704 -0.8891 33 1 4.1608 1.4706 0.8908 34 1 3.6669 3.9009 0.8896 35 1 3.6678 3.9000 -0.8904 36 1 5.6281 5.2832 1.2491 37 1 5.4029 5.6363 -0.4809 38 1 7.7107 6.1922 0.2806 39 1 7.7159 4.9027 -0.9468 40 1 10.1618 3.3931 1.0691 41 1 9.9197 4.7064 -0.1312 42 1 11.0050 5.1581 2.3865 43 1 10.0607 6.3927 1.5025 44 1 8.4803 5.2473 4.9899 45 1 10.1246 5.8271 4.6312 46 1 9.1795 7.8957 3.6432 47 1 7.5353 7.3160 4.0020 48 1 8.0985 10.5430 7.3759 49 1 7.9930 2.4576 -0.1545 50 1 8.1692 2.1504 1.5904 51 1 5.8865 3.0064 1.9869 52 1 5.8519 1.6791 0.8012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272460316.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = -62.706325 kcal Electronic energy + Delta-G solvation = -28470.388641 eV Core-core repulsion = 24787.460103 eV Total energy + Delta-G solvation = -3682.928538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22108 -39.35292 -37.52569 -36.54641 -35.24471 -33.92563 -32.31323 -31.81972 -30.09393 -29.78310 -27.62779 -26.97471 -25.38507 -24.40575 -23.29144 -22.72939 -21.73827 -21.33205 -19.60585 -19.08371 -17.68584 -17.20399 -17.12513 -16.71540 -16.60170 -16.28653 -16.05505 -15.86398 -15.42107 -15.10056 -14.92650 -14.86327 -14.64640 -14.46462 -14.38764 -14.29290 -14.07982 -13.80535 -13.48823 -13.47790 -13.25583 -13.06078 -12.94585 -12.84426 -12.77584 -12.52312 -12.26538 -12.08300 -12.04648 -11.93137 -11.84897 -11.79822 -11.55598 -11.26931 -11.15812 -10.91470 -10.85935 -10.47395 -9.58021 -9.23656 -8.73297 -8.37671 -6.42687 0.68887 1.27537 1.29103 1.40603 1.63992 1.64524 2.14749 2.27825 2.90240 2.96995 3.32138 3.51606 3.69119 3.85070 3.89717 4.00597 4.05251 4.12004 4.24718 4.29413 4.29674 4.32488 4.33597 4.38639 4.49014 4.52287 4.54089 4.56771 4.65777 4.69451 4.72482 4.74850 4.79492 4.85507 4.89392 4.94702 5.01093 5.06319 5.10350 5.13396 5.14603 5.15944 5.24758 5.26823 5.35309 5.45981 5.74007 6.08421 6.09643 6.16226 6.31887 6.63521 7.21158 7.27520 8.78626 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.002519 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.259674 B =11114.448108 C =12244.175657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.316 6.316 3 C -0.071 4.071 4 C -0.096 4.096 5 C 0.062 3.938 6 N -0.522 5.522 7 C 0.048 3.952 8 C -0.088 4.088 9 C -0.088 4.088 10 C -0.108 4.108 11 C 0.090 3.910 12 N -0.622 5.622 13 C 0.147 3.853 14 C -0.011 4.011 15 C -0.533 4.533 16 H 0.039 0.961 17 C 0.009 3.991 18 N -0.944 5.944 19 Si 0.949 3.051 20 H -0.278 1.278 21 H -0.274 1.274 22 H -0.246 1.246 23 C 0.505 3.495 24 O -0.576 6.576 25 C -0.085 4.085 26 C 0.035 3.965 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.093 0.907 36 H 0.004 0.996 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.029 0.971 47 H -0.005 1.005 48 H 0.268 0.732 49 H 0.107 0.893 50 H 0.065 0.935 51 H 0.024 0.976 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -16.923 -24.969 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.091 6.091 3 C -0.220 4.220 4 C -0.134 4.134 5 C -0.068 4.068 6 N -0.246 5.246 7 C -0.080 4.080 8 C -0.126 4.126 9 C -0.092 4.092 10 C -0.145 4.145 11 C -0.032 4.032 12 N -0.354 5.354 13 C 0.025 3.975 14 C -0.049 4.049 15 C -0.572 4.572 16 H 0.057 0.943 17 C -0.188 4.188 18 N -0.584 5.584 19 Si 0.772 3.228 20 H -0.204 1.204 21 H -0.199 1.199 22 H -0.170 1.170 23 C 0.294 3.706 24 O -0.456 6.456 25 C -0.123 4.123 26 C -0.093 4.093 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.111 0.889 36 H 0.022 0.978 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.143 0.857 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.047 0.953 47 H 0.013 0.987 48 H 0.077 0.923 49 H 0.125 0.875 50 H 0.083 0.917 51 H 0.043 0.957 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.545 -17.850 -24.914 31.146 hybrid contribution -1.753 2.178 1.734 3.290 sum -7.298 -15.672 -23.180 28.917 Atomic orbital electron populations 1.23418 0.91188 1.07464 1.05772 1.87097 1.10798 1.13005 1.98204 1.23296 0.99956 0.93121 1.05579 1.21350 0.92725 0.95893 1.03460 1.22101 0.87873 0.96025 1.00799 1.62157 1.08146 1.05366 1.48975 1.22148 0.97293 0.89824 0.98715 1.21436 0.93009 0.98143 0.99990 1.21119 0.98796 0.98488 0.90761 1.22768 0.91244 1.00009 1.00477 1.22445 0.90994 1.00877 0.88899 1.48730 1.17591 1.55514 1.13556 1.21136 1.01445 0.93732 0.81198 1.19707 0.95330 0.94318 0.95559 1.21281 1.42718 0.98482 0.94700 0.94293 1.25941 0.95361 0.99396 0.98146 1.70047 1.49341 1.17024 1.22006 0.85687 0.78817 0.77904 0.80383 1.20388 1.19945 1.16998 1.21549 0.82182 0.76892 0.89930 1.90616 1.29785 1.58947 1.66243 1.21396 0.94418 0.92677 1.03788 1.22394 0.95429 0.97572 0.93885 0.87092 0.90032 0.89240 0.90397 0.88392 0.89638 0.91985 0.96615 0.88919 0.97769 0.89327 0.91735 0.86668 0.88168 0.85685 0.88677 0.90689 0.93475 0.89411 0.95300 0.98696 0.92261 0.87464 0.91655 0.95729 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.76 113.37 1.22 0.03 16 2 S -0.32 -5.56 22.38 -56.49 -1.26 -6.82 16 3 C -0.07 -1.10 5.94 71.99 0.43 -0.67 16 4 C -0.10 -1.69 4.47 30.60 0.14 -1.55 16 5 C 0.06 1.22 5.27 86.30 0.46 1.68 16 6 N -0.52 -11.54 4.79 -895.88 -4.29 -15.84 16 7 C 0.05 1.19 5.21 86.36 0.45 1.64 16 8 C -0.09 -1.80 4.77 30.49 0.15 -1.65 16 9 C -0.09 -1.97 0.55 -52.82 -0.03 -2.00 16 10 C -0.11 -1.60 6.21 31.52 0.20 -1.41 16 11 C 0.09 1.94 7.36 86.86 0.64 2.58 16 12 N -0.62 -20.85 2.94 -818.06 -2.40 -23.25 16 13 C 0.15 6.13 5.87 86.38 0.51 6.64 16 14 C -0.01 -0.53 4.37 29.85 0.13 -0.40 16 15 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 16 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 17 C 0.01 0.56 5.47 84.65 0.46 1.02 16 18 N -0.94 -60.07 13.96 21.45 0.30 -59.77 16 19 Si 0.95 45.86 27.47 68.60 1.88 47.74 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 23 C 0.51 17.47 6.32 87.72 0.55 18.02 16 24 O -0.58 -25.42 13.85 -3.03 -0.04 -25.47 16 25 C -0.08 -1.71 4.77 30.49 0.15 -1.56 16 26 C 0.03 0.85 4.64 86.36 0.40 1.25 16 27 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.30 6.20 -2.39 -0.01 1.28 16 34 H 0.02 0.38 8.08 -2.38 -0.02 0.36 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.00 0.13 6.68 -2.39 -0.02 0.12 16 37 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.19 7.89 -2.39 -0.02 1.17 16 41 H 0.12 1.07 7.87 -2.39 -0.02 1.05 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 2.19 7.94 -2.39 -0.02 2.18 16 45 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 46 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 47 H -0.01 -0.29 7.57 -2.39 -0.02 -0.30 16 48 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 49 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 51 H 0.02 0.82 5.78 -2.38 -0.01 0.80 16 52 H 0.09 1.89 5.78 -2.39 -0.01 1.88 16 Total: -1.00 -77.75 407.16 1.08 -76.68 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.81 Total: 14.57 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 6.09 Total: -7.84 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -6.40 Total: -98.86 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.04 Total: -25.47 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -1.26 Total: -6.82 kcal Total: -77.75 1.08 -76.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272460316.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.969 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds