Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81405 * 102.99706 * 2 1 4 4 H 1.08992 * 109.47149 * 55.00303 * 3 2 1 5 5 C 1.52997 * 109.47367 * 294.99750 * 3 2 1 6 6 C 1.53007 * 109.46788 * 175.00114 * 3 2 1 7 7 C 1.53002 * 109.46954 * 295.00157 * 6 3 2 8 8 N 1.46903 * 109.46804 * 180.02562 * 7 6 3 9 9 C 1.48076 * 110.99770 * 290.41794 * 8 7 6 10 10 C 1.54974 * 104.81573 * 213.97142 * 9 8 7 11 11 C 1.55309 * 101.74002 * 36.66785 * 10 9 8 12 12 C 1.46651 * 110.99761 * 169.99984 * 8 7 6 13 13 C 1.53890 * 110.90460 * 2.15336 * 12 8 7 14 14 C 1.54642 * 101.59229 * 263.46359 * 13 12 8 15 15 N 1.46845 * 105.50556 * 335.23015 * 14 13 12 16 16 C 1.46497 * 124.37143 * 196.86027 * 15 14 13 17 17 C 1.53001 * 109.47246 * 270.02698 * 16 15 14 18 18 C 1.50701 * 109.47403 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99842 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00000 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47257 * 59.99586 * 22 20 18 24 24 H 1.48500 * 109.47526 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47133 * 299.99961 * 22 20 18 26 26 C 1.34661 * 111.26397 * 16.87970 * 15 14 13 27 27 O 1.21283 * 125.07310 * 179.16492 * 26 15 14 28 28 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47089 * 299.99939 * 1 2 3 30 30 H 1.09004 * 109.47568 * 59.99949 * 1 2 3 31 31 H 1.09008 * 109.47035 * 59.99870 * 5 3 2 32 32 H 1.08990 * 109.47201 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.47460 * 300.00770 * 5 3 2 34 34 H 1.09004 * 109.47028 * 55.00189 * 6 3 2 35 35 H 1.08999 * 109.46726 * 175.00135 * 6 3 2 36 36 H 1.08997 * 109.46914 * 299.99877 * 7 6 3 37 37 H 1.09001 * 109.47213 * 59.99911 * 7 6 3 38 38 H 1.08999 * 110.37065 * 332.81276 * 9 8 7 39 39 H 1.09007 * 110.36696 * 95.14083 * 9 8 7 40 40 H 1.08997 * 110.97876 * 278.54985 * 10 9 8 41 41 H 1.09005 * 110.97353 * 154.78087 * 10 9 8 42 42 H 1.09001 * 110.74824 * 206.63066 * 11 10 9 43 43 H 1.08999 * 110.90502 * 83.36186 * 11 10 9 44 44 H 1.08997 * 110.99899 * 21.53901 * 13 12 8 45 45 H 1.08991 * 111.00266 * 145.38254 * 13 12 8 46 46 H 1.09007 * 110.23794 * 216.22731 * 14 13 12 47 47 H 1.08997 * 110.31560 * 94.27720 * 14 13 12 48 48 H 1.09004 * 109.47039 * 30.01923 * 16 15 14 49 49 H 1.08998 * 109.47741 * 150.02697 * 16 15 14 50 50 H 1.09000 * 109.47173 * 299.99654 * 17 16 15 51 51 H 1.08998 * 109.47218 * 59.99645 * 17 16 15 52 52 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7370 1.9412 0.1257 7 6 4.1988 1.4191 1.4877 8 7 5.6533 1.5864 1.6086 9 6 6.3709 0.6639 0.6994 10 6 7.6662 0.2848 1.4611 11 6 7.1599 0.2089 2.9273 12 6 6.1008 1.3200 2.9795 13 6 4.9201 0.8927 3.8692 14 6 4.5395 2.2308 4.5444 15 7 5.7605 3.0461 4.5158 16 6 5.9801 4.2359 5.3419 17 6 5.4812 5.4745 4.5951 18 6 5.7065 6.6984 5.4451 19 1 6.1598 6.6022 6.4206 20 6 5.3329 7.9406 4.9779 21 7 4.7804 8.0575 3.7902 22 14 5.6115 9.4574 6.0318 23 1 7.0617 9.6026 6.3169 24 1 5.1273 10.6597 5.3070 25 1 4.8677 9.3161 7.3093 26 6 6.6522 2.5593 3.6319 27 8 7.7377 3.0466 3.3968 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.6634 2.2779 -1.3970 32 1 1.9883 3.4635 -1.3075 33 1 2.2353 1.9150 -2.1492 34 1 4.2339 1.3805 -0.6660 35 1 3.9901 2.9977 0.0366 36 1 3.7019 1.9799 2.2793 37 1 3.9456 0.3627 1.5768 38 1 5.7693 -0.2247 0.5082 39 1 6.6145 1.1668 -0.2365 40 1 8.4251 1.0593 1.3499 41 1 8.0457 -0.6815 1.1287 42 1 7.9702 0.4146 3.6268 43 1 6.7110 -0.7626 3.1339 44 1 4.0957 0.5105 3.2672 45 1 5.2349 0.1572 4.6094 46 1 4.2257 2.0579 5.5739 47 1 3.7438 2.7237 3.9859 48 1 5.4343 4.1328 6.2798 49 1 7.0447 4.3419 5.5507 50 1 6.0269 5.5777 3.6572 51 1 4.4166 5.3686 4.3863 52 1 4.5179 8.9315 3.4613 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273121175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = -49.905910 kcal Electronic energy + Delta-G solvation = -29062.647383 eV Core-core repulsion = 25380.273913 eV Total energy + Delta-G solvation = -3682.373470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32412 -39.26124 -37.41678 -36.47216 -35.55205 -33.55821 -33.07545 -30.82327 -29.96366 -28.98639 -28.57995 -27.03567 -24.92365 -24.24414 -23.58383 -22.83752 -22.00277 -20.94884 -19.83224 -18.70420 -17.96070 -17.42192 -17.27571 -16.67402 -16.54444 -16.35197 -16.04715 -15.61285 -15.29485 -14.95439 -14.89557 -14.60571 -14.49681 -14.45845 -14.30128 -14.03284 -13.95962 -13.59488 -13.55433 -13.46162 -13.07587 -12.94031 -12.84040 -12.70719 -12.53386 -12.42903 -12.26630 -12.02360 -12.00239 -11.94507 -11.79989 -11.75585 -11.70084 -11.61498 -11.41348 -10.81002 -10.67941 -10.60265 -9.55532 -9.26836 -8.57632 -8.23956 -6.37611 0.78707 1.37501 1.42368 1.49533 1.54786 1.69350 2.15527 2.40683 2.95700 3.08959 3.30646 3.34392 3.70477 3.74667 3.87818 3.88400 4.01569 4.13680 4.21513 4.26633 4.31682 4.32567 4.36387 4.41397 4.45921 4.54363 4.56863 4.61159 4.67945 4.71270 4.75406 4.81117 4.84311 4.85918 4.90892 4.94693 4.97683 5.02346 5.05501 5.15737 5.16547 5.24269 5.30261 5.33545 5.44655 5.59464 5.81668 5.93190 6.09496 6.15901 6.33880 6.77611 7.28533 7.32653 8.88008 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009861 B = 0.003375 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.761379 B = 8294.934293 C =10040.231954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.283 6.283 3 C -0.047 4.047 4 H 0.085 0.915 5 C -0.145 4.145 6 C -0.092 4.092 7 C 0.052 3.948 8 N -0.536 5.536 9 C 0.049 3.951 10 C -0.126 4.126 11 C -0.114 4.114 12 C 0.076 3.924 13 C -0.144 4.144 14 C 0.097 3.903 15 N -0.618 5.618 16 C 0.142 3.858 17 C 0.029 3.971 18 C -0.548 4.548 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.971 3.029 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.258 1.258 26 C 0.520 3.480 27 O -0.581 6.581 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.092 0.908 49 H 0.051 0.949 50 H -0.032 1.032 51 H -0.003 1.003 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 -23.496 -6.738 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.057 6.057 3 C -0.176 4.176 4 H 0.103 0.897 5 C -0.204 4.204 6 C -0.131 4.131 7 C -0.075 4.075 8 N -0.261 5.261 9 C -0.078 4.078 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.017 4.017 13 C -0.182 4.182 14 C -0.025 4.025 15 N -0.350 5.350 16 C 0.021 3.979 17 C -0.009 4.009 18 C -0.586 4.586 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.795 3.205 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.182 1.182 26 C 0.307 3.693 27 O -0.460 6.460 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.132 0.868 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.069 0.931 50 H -0.014 1.014 51 H 0.016 0.984 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.796 -23.408 -7.038 25.656 hybrid contribution -0.695 2.006 0.388 2.158 sum -8.491 -21.403 -6.649 23.966 Atomic orbital electron populations 1.23465 0.92326 1.07253 1.05553 1.86785 1.09599 1.11379 1.97963 1.23073 0.98960 0.93663 1.01906 0.89702 1.22046 1.01755 1.00892 0.95673 1.21352 0.92296 1.01761 0.97646 1.22572 0.86532 1.00682 0.97765 1.62989 1.06487 1.53599 1.03018 1.23159 0.94264 0.94446 0.95905 1.22729 0.97092 1.02429 0.94130 1.22647 0.96931 0.97519 0.98173 1.21762 0.97280 0.92388 0.90297 1.23386 0.98558 0.96628 0.99642 1.22345 0.86243 0.90723 1.03186 1.48645 1.18052 1.27683 1.40631 1.21362 1.00103 0.83075 0.93378 1.19150 0.94486 0.92916 0.94360 1.21527 1.40940 0.92717 1.03400 0.91484 1.26038 0.94441 1.02846 0.96406 1.70125 1.42377 1.25077 1.19568 0.85416 0.78875 0.77425 0.78815 1.19561 1.20725 1.18247 1.21259 0.83521 0.85953 0.78568 1.90604 1.24098 1.65731 1.65562 0.87059 0.90054 0.89831 0.91378 0.92034 0.91220 0.90623 0.91940 0.90966 0.90933 0.90763 0.90752 0.93250 0.87584 0.91971 0.86867 0.85655 0.86849 0.87986 0.92000 0.89011 0.93053 1.01366 0.98440 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 10.45 113.37 1.18 -0.11 16 2 S -0.28 -4.61 20.60 -56.49 -1.16 -5.78 16 3 C -0.05 -0.85 2.82 30.60 0.09 -0.77 16 4 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.14 -2.37 9.10 71.98 0.66 -1.71 16 6 C -0.09 -2.01 4.73 30.60 0.14 -1.86 16 7 C 0.05 1.16 3.23 86.30 0.28 1.44 16 8 N -0.54 -14.90 4.85 -841.79 -4.09 -18.99 16 9 C 0.05 1.09 5.82 86.75 0.51 1.59 16 10 C -0.13 -2.81 7.08 32.06 0.23 -2.58 16 11 C -0.11 -2.59 5.86 31.59 0.18 -2.41 16 12 C 0.08 2.13 0.99 3.27 0.00 2.14 16 13 C -0.14 -2.92 5.51 31.45 0.17 -2.75 16 14 C 0.10 2.62 6.98 86.87 0.61 3.23 16 15 N -0.62 -23.99 2.94 -818.12 -2.41 -26.40 16 16 C 0.14 6.46 5.88 86.38 0.51 6.97 16 17 C 0.03 1.65 5.30 29.85 0.16 1.81 16 18 C -0.55 -32.47 9.11 25.60 0.23 -32.23 16 19 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 20 C 0.00 0.05 5.46 84.65 0.46 0.51 16 21 N -0.93 -58.96 13.29 21.45 0.28 -58.68 16 22 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 C 0.52 21.23 6.97 87.62 0.61 21.84 16 27 O -0.58 -29.66 17.43 -3.04 -0.05 -29.71 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.81 7.14 -2.39 -0.02 0.80 16 31 H 0.07 0.93 6.92 -2.38 -0.02 0.91 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.57 7.51 -2.38 -0.02 1.56 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.78 5.06 -2.39 -0.01 1.77 16 37 H 0.07 1.35 5.79 -2.39 -0.01 1.33 16 38 H 0.07 1.29 7.62 -2.39 -0.02 1.27 16 39 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 43 H 0.11 1.71 7.81 -2.39 -0.02 1.69 16 44 H 0.13 2.03 4.85 -2.39 -0.01 2.01 16 45 H 0.11 1.70 7.83 -2.39 -0.02 1.69 16 46 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.06 1.77 6.76 -2.39 -0.02 1.76 16 48 H 0.09 3.60 8.14 -2.38 -0.02 3.58 16 49 H 0.05 2.49 7.94 -2.39 -0.02 2.47 16 50 H -0.03 -2.15 8.14 -2.39 -0.02 -2.17 16 51 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 52 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -80.00 410.18 1.50 -78.50 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.88 Total: 18.53 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 6.02 Total: -4.90 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -6.21 Total: -104.07 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.71 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -1.16 Total: -5.78 kcal Total: -80.00 1.50 -78.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273121175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.597 kcal (2) G-P(sol) polarization free energy of solvation -80.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds