Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 102.99917 * 2 1 4 4 H 1.08998 * 109.47204 * 54.99926 * 3 2 1 5 5 C 1.52996 * 109.47236 * 294.99859 * 3 2 1 6 6 C 1.53002 * 109.46744 * 174.99892 * 3 2 1 7 7 C 1.52992 * 109.47225 * 295.00044 * 6 3 2 8 8 N 1.46900 * 109.47169 * 180.02562 * 7 6 3 9 9 C 1.47669 * 110.99912 * 69.43394 * 8 7 6 10 10 C 1.54527 * 107.05309 * 123.12466 * 9 8 7 11 11 C 1.54345 * 102.64591 * 22.92091 * 10 9 8 12 12 H 1.09000 * 110.76252 * 80.40197 * 11 10 9 13 13 C 1.48274 * 111.00294 * 189.99796 * 8 7 6 14 14 H 1.08997 * 111.35348 * 91.92243 * 13 8 7 15 15 C 1.53124 * 108.11260 * 329.41552 * 13 8 7 16 16 C 1.52888 * 109.32897 * 182.70121 * 15 13 8 17 17 C 1.50339 * 109.31271 * 52.84747 * 16 15 13 18 18 O 1.21282 * 118.80369 * 158.33710 * 17 16 15 19 19 N 1.33351 * 122.39569 * 338.36713 * 17 16 15 20 20 C 1.46505 * 117.28548 * 179.73402 * 19 17 16 21 21 C 1.52997 * 109.47212 * 89.99753 * 20 19 17 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99890 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00428 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99563 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00432 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46616 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47104 * 119.99966 * 26 24 22 29 29 H 1.48489 * 109.47200 * 240.00246 * 26 24 22 30 30 H 1.09009 * 109.46859 * 60.00030 * 1 2 3 31 31 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47344 * 300.00324 * 1 2 3 33 33 H 1.08998 * 109.47078 * 300.00143 * 5 3 2 34 34 H 1.09000 * 109.47225 * 60.00312 * 5 3 2 35 35 H 1.09002 * 109.47354 * 180.02562 * 5 3 2 36 36 H 1.09006 * 109.47091 * 175.00101 * 6 3 2 37 37 H 1.08997 * 109.47160 * 55.00365 * 6 3 2 38 38 H 1.09000 * 109.47708 * 60.00216 * 7 6 3 39 39 H 1.09006 * 109.47447 * 300.00040 * 7 6 3 40 40 H 1.09000 * 109.91729 * 242.47399 * 9 8 7 41 41 H 1.08996 * 109.91799 * 3.77186 * 9 8 7 42 42 H 1.08997 * 110.78397 * 141.27309 * 10 9 8 43 43 H 1.09001 * 110.78145 * 264.52567 * 10 9 8 44 44 H 1.08998 * 109.49441 * 62.74281 * 15 13 8 45 45 H 1.09001 * 109.49220 * 302.65792 * 15 13 8 46 46 H 1.08997 * 109.49898 * 292.89734 * 16 15 13 47 47 H 1.09000 * 109.49796 * 172.80330 * 16 15 13 48 48 H 1.09002 * 109.47068 * 209.99813 * 20 19 17 49 49 H 1.09001 * 109.47372 * 329.99901 * 20 19 17 50 50 H 1.09002 * 109.47153 * 300.00008 * 21 20 19 51 51 H 1.08998 * 109.47533 * 59.99637 * 21 20 19 52 52 H 0.97002 * 119.99731 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7370 1.9411 0.1258 7 6 4.1988 1.4191 1.4877 8 7 5.6532 1.5863 1.6086 9 6 6.0144 3.0139 1.7186 10 6 6.8113 3.1799 3.0321 11 6 7.3494 1.7552 3.2831 12 1 8.2336 1.5634 2.6753 13 6 6.1717 0.8803 2.8050 14 1 6.4844 -0.1352 2.5620 15 6 5.0736 0.8825 3.8722 16 6 5.6027 0.2194 5.1441 17 6 6.8938 0.8760 5.5470 18 8 7.2612 0.7845 6.6992 19 7 7.6494 1.5558 4.6838 20 6 8.8830 2.1556 5.1985 21 6 10.0332 1.1566 5.0575 22 6 11.3022 1.7737 5.5863 23 1 11.2896 2.7779 5.9837 24 6 12.4793 1.0561 5.5638 25 7 12.4946 -0.1669 5.0803 26 14 14.0525 1.8213 6.2187 27 1 13.7699 3.1965 6.7025 28 1 14.5729 0.9994 7.3407 29 1 15.0651 1.8760 5.1340 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2354 1.9150 -2.1491 34 1 0.6636 2.2779 -1.3969 35 1 1.9884 3.4636 -1.3075 36 1 3.9903 2.9976 0.0367 37 1 4.2339 1.3804 -0.6659 38 1 3.9456 0.3627 1.5769 39 1 3.7019 1.9799 2.2794 40 1 6.6323 3.3071 0.8699 41 1 5.1117 3.6238 1.7524 42 1 7.6311 3.8861 2.9006 43 1 6.1568 3.4963 3.8442 44 1 4.2092 0.3288 3.5058 45 1 4.7819 1.9096 4.0917 46 1 5.7765 -0.8402 4.9567 47 1 4.8716 0.3325 5.9446 48 1 9.1130 3.0572 4.6307 49 1 8.7513 2.4120 6.2497 50 1 9.8031 0.2551 5.6253 51 1 10.1649 0.9002 4.0063 52 1 13.3226 -0.6720 5.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273121295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = -39.844369 kcal Electronic energy + Delta-G solvation = -28485.572154 eV Core-core repulsion = 24803.634985 eV Total energy + Delta-G solvation = -3681.937169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00519 -38.67429 -36.15061 -34.94542 -33.56812 -32.87063 -31.56929 -29.64079 -29.10432 -28.48532 -27.50621 -25.11725 -23.92881 -23.55138 -22.09338 -21.64223 -21.05060 -19.79672 -17.99381 -16.98311 -16.91212 -16.38240 -16.09805 -15.80470 -15.43798 -15.01049 -14.73544 -14.57573 -14.42718 -14.10067 -13.94808 -13.74157 -13.71690 -13.46652 -13.02932 -12.89368 -12.79526 -12.52442 -12.28110 -12.22897 -12.02728 -11.87605 -11.66401 -11.46625 -11.35781 -11.29260 -11.18853 -11.11147 -10.91114 -10.79526 -10.68733 -10.55172 -10.09857 -9.82944 -9.80867 -9.29173 -8.97499 -8.45636 -8.31816 -8.01813 -8.01386 -5.97005 -3.99604 1.31142 2.20423 3.12240 3.32974 3.33989 3.41426 3.45698 3.81284 4.30086 4.38670 4.49641 4.50367 4.51843 4.70107 4.73080 4.76364 4.78521 4.80689 4.98642 5.02393 5.12046 5.15215 5.18910 5.23684 5.27839 5.30846 5.34584 5.39124 5.42955 5.48719 5.65338 5.67242 5.72377 5.75322 5.81619 5.85558 5.89361 5.93314 6.11949 6.18026 6.25572 6.59675 6.73923 6.84702 6.91960 6.96327 7.67722 7.78881 8.04051 8.09947 8.41099 8.70800 9.07216 9.63858 11.14556 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.002267 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.603489 B =12347.939640 C =12821.282742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.252 6.252 3 C -0.056 4.056 4 H 0.084 0.916 5 C -0.147 4.147 6 C -0.097 4.097 7 C 0.048 3.952 8 N -0.520 5.520 9 C 0.042 3.958 10 C -0.155 4.155 11 C 0.145 3.855 12 H 0.101 0.899 13 C 0.068 3.932 14 H 0.106 0.894 15 C -0.146 4.146 16 C -0.133 4.133 17 C 0.510 3.490 18 O -0.547 6.547 19 N -0.589 5.589 20 C 0.109 3.891 21 C 0.015 3.985 22 C -0.518 4.518 23 H 0.056 0.944 24 C 0.058 3.942 25 N -0.893 5.893 26 Si 0.894 3.106 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.021 0.979 51 H 0.015 0.985 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.213 5.003 -13.914 30.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.026 6.026 3 C -0.185 4.185 4 H 0.103 0.897 5 C -0.206 4.206 6 C -0.135 4.135 7 C -0.080 4.080 8 N -0.243 5.243 9 C -0.086 4.086 10 C -0.195 4.195 11 C 0.039 3.961 12 H 0.119 0.881 13 C -0.040 4.040 14 H 0.124 0.876 15 C -0.185 4.185 16 C -0.174 4.174 17 C 0.298 3.702 18 O -0.425 6.425 19 N -0.320 5.320 20 C -0.012 4.012 21 C -0.023 4.023 22 C -0.557 4.557 23 H 0.074 0.926 24 C -0.144 4.144 25 N -0.532 5.532 26 Si 0.721 3.279 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.040 0.960 51 H 0.033 0.967 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.043 3.719 -13.808 28.838 hybrid contribution -0.371 1.678 0.972 1.974 sum -25.413 5.398 -12.837 28.978 Atomic orbital electron populations 1.23414 0.94994 1.06391 1.04705 1.87080 1.06523 1.11174 1.97825 1.23178 1.00291 0.93807 1.01215 0.89717 1.22074 1.01099 1.01045 0.96413 1.21451 0.91007 1.02215 0.98876 1.22409 0.87627 1.02221 0.95765 1.63823 1.12304 1.09974 1.38222 1.22918 0.99110 0.88826 0.97702 1.23158 1.00533 0.98221 0.97539 1.21450 0.98118 0.93691 0.82858 0.88144 1.22891 0.93698 0.99145 0.88281 0.87599 1.22281 0.99250 1.01569 0.95385 1.21603 0.95627 1.01482 0.98686 1.19980 0.85571 0.79148 0.85495 1.90733 1.72745 1.60125 1.18890 1.47084 1.24024 1.52637 1.08212 1.21925 0.83025 0.96905 0.99335 1.19338 0.91134 0.94616 0.97177 1.21128 0.93138 1.00615 1.40794 0.92556 1.25004 0.99111 0.94860 0.95402 1.69988 1.27103 1.10045 1.46078 0.86512 0.83341 0.79390 0.78614 1.19716 1.21006 1.21038 0.90620 0.88204 0.90674 0.91136 0.92638 0.91626 0.90538 0.89932 0.89388 0.94290 0.89983 0.92615 0.89929 0.91171 0.90128 0.91454 0.88402 0.88629 0.92056 0.90691 0.96016 0.96676 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 10.45 101.05 1.06 0.39 16 2 S -0.25 -1.97 20.60 -107.50 -2.21 -4.19 16 3 C -0.06 -0.35 2.82 -26.73 -0.08 -0.43 16 4 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 5 C -0.15 -0.77 9.10 37.16 0.34 -0.44 16 6 C -0.10 -0.70 4.71 -26.73 -0.13 -0.83 16 7 C 0.05 0.41 3.16 -3.83 -0.01 0.40 16 8 N -0.52 -5.35 5.16 -223.02 -1.15 -6.50 16 9 C 0.04 0.41 6.17 -2.60 -0.02 0.39 16 10 C -0.16 -1.81 5.79 -25.22 -0.15 -1.95 16 11 C 0.14 2.08 3.11 -67.54 -0.21 1.87 16 12 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 13 C 0.07 0.81 3.51 -66.20 -0.23 0.58 16 14 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.15 -1.57 3.87 -26.72 -0.10 -1.68 16 16 C -0.13 -1.77 6.08 -28.12 -0.17 -1.94 16 17 C 0.51 9.53 7.47 -11.79 -0.09 9.44 16 18 O -0.55 -12.81 16.21 5.56 0.09 -12.72 16 19 N -0.59 -10.64 2.49 -166.43 -0.41 -11.05 16 20 C 0.11 2.36 5.02 -4.04 -0.02 2.34 16 21 C 0.02 0.41 5.28 -27.89 -0.15 0.26 16 22 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 23 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 26 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 27 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 30 H 0.07 0.33 7.14 -51.92 -0.37 -0.04 16 31 H 0.10 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.26 6.92 -51.93 -0.36 -0.10 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.51 7.11 -51.93 -0.37 0.14 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.83 6.29 -51.93 -0.33 0.50 16 39 H 0.04 0.33 6.73 -51.93 -0.35 -0.02 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.46 6.90 -51.93 -0.36 0.10 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.84 7.39 -51.93 -0.38 0.45 16 44 H 0.08 0.74 6.38 -51.93 -0.33 0.41 16 45 H 0.07 0.73 6.53 -51.93 -0.34 0.39 16 46 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.06 1.21 7.79 -51.93 -0.40 0.81 16 49 H 0.07 1.76 7.14 -51.93 -0.37 1.39 16 50 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -33.65 406.06 -11.64 -45.29 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -9.42 Total: -1.99 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.36 Total: -5.30 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.83 Total: -44.32 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.21 Total: -4.19 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.65 -11.64 -45.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273121295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.449 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds